Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3812

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3811 and EX28DRAFT_3812 are separated by 163 nucleotidesEX28DRAFT_3812 and EX28DRAFT_3813 are separated by 129 nucleotides EX28DRAFT_3811: EX28DRAFT_3811 - molybdopterin guanine dinucleotide-containing S/N-oxide reductases, at 14,365 to 16,692 _3811 EX28DRAFT_3812: EX28DRAFT_3812 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 16,856 to 17,518 _3812 EX28DRAFT_3813: EX28DRAFT_3813 - Transcriptional regulators, at 17,648 to 18,664 _3813 Position (kb) 16 17 18Strain fitness (log2 ratio) -1 0 1at 15.857 kb on + strand, within EX28DRAFT_3811at 15.858 kb on - strand, within EX28DRAFT_3811at 15.885 kb on + strand, within EX28DRAFT_3811at 16.203 kb on - strand, within EX28DRAFT_3811at 16.281 kb on - strand, within EX28DRAFT_3811at 16.281 kb on - strand, within EX28DRAFT_3811at 16.301 kb on + strand, within EX28DRAFT_3811at 16.302 kb on - strand, within EX28DRAFT_3811at 16.385 kb on + strand, within EX28DRAFT_3811at 16.385 kb on + strand, within EX28DRAFT_3811at 16.386 kb on - strand, within EX28DRAFT_3811at 16.721 kb on - strandat 16.745 kb on - strandat 16.769 kb on + strandat 16.769 kb on + strandat 16.802 kb on + strandat 16.803 kb on - strandat 16.869 kb on + strandat 17.093 kb on + strand, within EX28DRAFT_3812at 17.093 kb on + strand, within EX28DRAFT_3812at 17.094 kb on - strand, within EX28DRAFT_3812at 17.094 kb on - strand, within EX28DRAFT_3812at 17.182 kb on + strand, within EX28DRAFT_3812at 17.277 kb on - strand, within EX28DRAFT_3812at 17.497 kb on + strandat 17.516 kb on + strandat 17.619 kb on + strandat 17.713 kb on + strandat 17.770 kb on + strand, within EX28DRAFT_3813at 17.950 kb on + strand, within EX28DRAFT_3813at 17.954 kb on - strand, within EX28DRAFT_3813at 17.985 kb on - strand, within EX28DRAFT_3813at 18.005 kb on + strand, within EX28DRAFT_3813at 18.006 kb on - strand, within EX28DRAFT_3813at 18.006 kb on - strand, within EX28DRAFT_3813at 18.085 kb on + strand, within EX28DRAFT_3813at 18.086 kb on - strand, within EX28DRAFT_3813

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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15,857 + EX28DRAFT_3811 0.64 +0.1
15,858 - EX28DRAFT_3811 0.64 +0.0
15,885 + EX28DRAFT_3811 0.65 -1.1
16,203 - EX28DRAFT_3811 0.79 -0.0
16,281 - EX28DRAFT_3811 0.82 -0.0
16,281 - EX28DRAFT_3811 0.82 +0.1
16,301 + EX28DRAFT_3811 0.83 -0.5
16,302 - EX28DRAFT_3811 0.83 +0.2
16,385 + EX28DRAFT_3811 0.87 +0.2
16,385 + EX28DRAFT_3811 0.87 -0.0
16,386 - EX28DRAFT_3811 0.87 -0.0
16,721 - +0.6
16,745 - -0.1
16,769 + -0.8
16,769 + -0.4
16,802 + -0.2
16,803 - +0.2
16,869 + -0.1
17,093 + EX28DRAFT_3812 0.36 +0.1
17,093 + EX28DRAFT_3812 0.36 -0.3
17,094 - EX28DRAFT_3812 0.36 -1.4
17,094 - EX28DRAFT_3812 0.36 -1.2
17,182 + EX28DRAFT_3812 0.49 -0.1
17,277 - EX28DRAFT_3812 0.63 +0.1
17,497 + +0.7
17,516 + -0.7
17,619 + +0.2
17,713 + +0.1
17,770 + EX28DRAFT_3813 0.12 +0.6
17,950 + EX28DRAFT_3813 0.30 -0.4
17,954 - EX28DRAFT_3813 0.30 -0.1
17,985 - EX28DRAFT_3813 0.33 +0.4
18,005 + EX28DRAFT_3813 0.35 +0.7
18,006 - EX28DRAFT_3813 0.35 -1.7
18,006 - EX28DRAFT_3813 0.35 -0.4
18,085 + EX28DRAFT_3813 0.43 -0.2
18,086 - EX28DRAFT_3813 0.43 -0.0

Or see this region's nucleotide sequence