Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3669

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3668 and EX28DRAFT_3669 are separated by 2 nucleotidesEX28DRAFT_3669 and EX28DRAFT_3670 overlap by 1 nucleotides EX28DRAFT_3668: EX28DRAFT_3668 - 3-isopropylmalate dehydratase, large subunit, at 334,392 to 335,792 _3668 EX28DRAFT_3669: EX28DRAFT_3669 - 3-isopropylmalate dehydrogenase, at 335,795 to 336,886 _3669 EX28DRAFT_3670: EX28DRAFT_3670 - 2-isopropylmalate synthase (EC 2.3.3.13), at 336,886 to 338,457 _3670 Position (kb) 335 336 337Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 335.068 kb on + strand, within EX28DRAFT_3668at 335.068 kb on + strand, within EX28DRAFT_3668at 335.130 kb on - strand, within EX28DRAFT_3668at 335.501 kb on - strand, within EX28DRAFT_3668at 335.716 kb on + strandat 335.747 kb on - strandat 335.776 kb on + strandat 335.776 kb on + strandat 335.776 kb on + strandat 335.778 kb on + strandat 335.779 kb on - strandat 335.787 kb on - strandat 335.796 kb on + strandat 335.796 kb on + strandat 335.797 kb on - strandat 335.815 kb on - strandat 336.213 kb on + strand, within EX28DRAFT_3669at 336.213 kb on + strand, within EX28DRAFT_3669at 336.213 kb on + strand, within EX28DRAFT_3669at 336.213 kb on + strand, within EX28DRAFT_3669at 336.213 kb on + strand, within EX28DRAFT_3669at 336.214 kb on - strand, within EX28DRAFT_3669at 336.323 kb on - strand, within EX28DRAFT_3669at 336.323 kb on - strand, within EX28DRAFT_3669at 336.388 kb on - strand, within EX28DRAFT_3669at 336.388 kb on - strand, within EX28DRAFT_3669at 336.388 kb on - strand, within EX28DRAFT_3669at 336.760 kb on - strand, within EX28DRAFT_3669at 336.869 kb on - strandat 336.874 kb on - strandat 337.112 kb on + strand, within EX28DRAFT_3670at 337.160 kb on + strand, within EX28DRAFT_3670at 337.161 kb on - strand, within EX28DRAFT_3670at 337.161 kb on - strand, within EX28DRAFT_3670at 337.274 kb on + strand, within EX28DRAFT_3670at 337.315 kb on - strand, within EX28DRAFT_3670at 337.419 kb on + strand, within EX28DRAFT_3670at 337.419 kb on + strand, within EX28DRAFT_3670at 337.421 kb on + strand, within EX28DRAFT_3670at 337.421 kb on + strand, within EX28DRAFT_3670at 337.421 kb on + strand, within EX28DRAFT_3670at 337.421 kb on + strand, within EX28DRAFT_3670at 337.438 kb on - strand, within EX28DRAFT_3670at 337.486 kb on + strand, within EX28DRAFT_3670at 337.486 kb on + strand, within EX28DRAFT_3670at 337.695 kb on + strand, within EX28DRAFT_3670at 337.762 kb on + strand, within EX28DRAFT_3670at 337.765 kb on - strand, within EX28DRAFT_3670at 337.821 kb on + strand, within EX28DRAFT_3670at 337.864 kb on - strand, within EX28DRAFT_3670

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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334,819 + EX28DRAFT_3668 0.30 -1.7
334,819 + EX28DRAFT_3668 0.30 -3.0
334,819 + EX28DRAFT_3668 0.30 -2.6
334,819 + EX28DRAFT_3668 0.30 -2.3
334,819 + EX28DRAFT_3668 0.30 -4.3
334,819 + EX28DRAFT_3668 0.30 -3.6
334,819 + EX28DRAFT_3668 0.30 -3.0
335,068 + EX28DRAFT_3668 0.48 -2.1
335,068 + EX28DRAFT_3668 0.48 -2.5
335,130 - EX28DRAFT_3668 0.53 -0.3
335,501 - EX28DRAFT_3668 0.79 -2.3
335,716 + -3.6
335,747 - -1.1
335,776 + -0.9
335,776 + -0.7
335,776 + -2.4
335,778 + -3.3
335,779 - -1.2
335,787 - -1.3
335,796 + -2.5
335,796 + -4.3
335,797 - -2.1
335,815 - -2.5
336,213 + EX28DRAFT_3669 0.38 -1.8
336,213 + EX28DRAFT_3669 0.38 -2.6
336,213 + EX28DRAFT_3669 0.38 -1.9
336,213 + EX28DRAFT_3669 0.38 -2.5
336,213 + EX28DRAFT_3669 0.38 -2.6
336,214 - EX28DRAFT_3669 0.38 -1.5
336,323 - EX28DRAFT_3669 0.48 -4.0
336,323 - EX28DRAFT_3669 0.48 -1.5
336,388 - EX28DRAFT_3669 0.54 -1.9
336,388 - EX28DRAFT_3669 0.54 -1.7
336,388 - EX28DRAFT_3669 0.54 -2.4
336,760 - EX28DRAFT_3669 0.88 -1.1
336,869 - -3.5
336,874 - -2.7
337,112 + EX28DRAFT_3670 0.14 -1.3
337,160 + EX28DRAFT_3670 0.17 +0.5
337,161 - EX28DRAFT_3670 0.17 +0.9
337,161 - EX28DRAFT_3670 0.17 -0.7
337,274 + EX28DRAFT_3670 0.25 -1.4
337,315 - EX28DRAFT_3670 0.27 -0.1
337,419 + EX28DRAFT_3670 0.34 -3.5
337,419 + EX28DRAFT_3670 0.34 -3.6
337,421 + EX28DRAFT_3670 0.34 -3.1
337,421 + EX28DRAFT_3670 0.34 -0.9
337,421 + EX28DRAFT_3670 0.34 -3.4
337,421 + EX28DRAFT_3670 0.34 -1.7
337,438 - EX28DRAFT_3670 0.35 -1.8
337,486 + EX28DRAFT_3670 0.38 -1.6
337,486 + EX28DRAFT_3670 0.38 -4.2
337,695 + EX28DRAFT_3670 0.51 -2.3
337,762 + EX28DRAFT_3670 0.56 -2.9
337,765 - EX28DRAFT_3670 0.56 -2.7
337,821 + EX28DRAFT_3670 0.59 -2.6
337,864 - EX28DRAFT_3670 0.62 -1.8

Or see this region's nucleotide sequence