Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3609

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3607 and EX28DRAFT_3608 are separated by 14 nucleotidesEX28DRAFT_3608 and EX28DRAFT_3609 overlap by 1 nucleotidesEX28DRAFT_3609 and EX28DRAFT_3610 are separated by 56 nucleotides EX28DRAFT_3607: EX28DRAFT_3607 - Uncharacterized protein conserved in bacteria, at 265,914 to 266,384 _3607 EX28DRAFT_3608: EX28DRAFT_3608 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 266,399 to 267,088 _3608 EX28DRAFT_3609: EX28DRAFT_3609 - Signal transduction histidine kinase, at 267,088 to 268,512 _3609 EX28DRAFT_3610: EX28DRAFT_3610 - Inner membrane protein involved in colicin E2 resistance, at 268,569 to 269,921 _3610 Position (kb) 267 268 269Strain fitness (log2 ratio) -1 0 1at 266.196 kb on - strand, within EX28DRAFT_3607at 266.224 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.305 kb on - strand, within EX28DRAFT_3607at 266.330 kb on - strand, within EX28DRAFT_3607at 266.370 kb on - strandat 266.382 kb on + strandat 266.382 kb on + strandat 266.459 kb on + strandat 266.460 kb on - strandat 266.460 kb on - strandat 266.662 kb on - strand, within EX28DRAFT_3608at 266.699 kb on + strand, within EX28DRAFT_3608at 266.699 kb on + strand, within EX28DRAFT_3608at 266.700 kb on - strand, within EX28DRAFT_3608at 266.700 kb on - strand, within EX28DRAFT_3608at 266.946 kb on + strand, within EX28DRAFT_3608at 267.068 kb on + strandat 267.069 kb on - strandat 267.176 kb on + strandat 267.436 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.595 kb on - strand, within EX28DRAFT_3609at 267.714 kb on + strand, within EX28DRAFT_3609at 267.714 kb on + strand, within EX28DRAFT_3609at 267.720 kb on + strand, within EX28DRAFT_3609at 267.720 kb on + strand, within EX28DRAFT_3609at 267.721 kb on - strand, within EX28DRAFT_3609at 267.774 kb on + strand, within EX28DRAFT_3609at 267.822 kb on + strand, within EX28DRAFT_3609at 267.850 kb on + strand, within EX28DRAFT_3609at 267.862 kb on + strand, within EX28DRAFT_3609at 267.862 kb on + strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.976 kb on - strand, within EX28DRAFT_3609at 268.056 kb on + strand, within EX28DRAFT_3609at 268.057 kb on - strand, within EX28DRAFT_3609at 268.341 kb on + strand, within EX28DRAFT_3609at 268.446 kb on + strandat 268.446 kb on + strandat 268.446 kb on + strandat 268.447 kb on - strandat 268.447 kb on - strandat 268.510 kb on + strandat 268.567 kb on + strandat 268.568 kb on - strandat 268.597 kb on + strandat 268.597 kb on + strandat 268.597 kb on + strandat 268.597 kb on + strandat 268.598 kb on - strandat 268.598 kb on - strandat 268.643 kb on + strandat 268.644 kb on - strandat 268.653 kb on - strandat 268.697 kb on + strandat 268.698 kb on - strandat 268.773 kb on + strand, within EX28DRAFT_3610at 268.773 kb on + strand, within EX28DRAFT_3610at 268.780 kb on + strand, within EX28DRAFT_3610at 268.780 kb on + strand, within EX28DRAFT_3610at 268.803 kb on + strand, within EX28DRAFT_3610at 268.804 kb on - strand, within EX28DRAFT_3610at 268.804 kb on - strand, within EX28DRAFT_3610at 268.815 kb on + strand, within EX28DRAFT_3610at 268.815 kb on + strand, within EX28DRAFT_3610at 268.815 kb on + strand, within EX28DRAFT_3610at 268.815 kb on + strand, within EX28DRAFT_3610at 268.817 kb on + strand, within EX28DRAFT_3610at 268.817 kb on + strand, within EX28DRAFT_3610at 268.818 kb on - strand, within EX28DRAFT_3610at 268.856 kb on + strand, within EX28DRAFT_3610at 268.890 kb on + strand, within EX28DRAFT_3610at 268.924 kb on + strand, within EX28DRAFT_3610at 268.925 kb on - strand, within EX28DRAFT_3610at 268.925 kb on - strand, within EX28DRAFT_3610at 269.046 kb on - strand, within EX28DRAFT_3610at 269.216 kb on + strand, within EX28DRAFT_3610at 269.217 kb on - strand, within EX28DRAFT_3610at 269.272 kb on - strand, within EX28DRAFT_3610at 269.272 kb on - strand, within EX28DRAFT_3610at 269.282 kb on + strand, within EX28DRAFT_3610at 269.342 kb on + strand, within EX28DRAFT_3610at 269.343 kb on - strand, within EX28DRAFT_3610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
266,196 - EX28DRAFT_3607 0.60 +0.6
266,224 + EX28DRAFT_3607 0.66 +0.0
266,277 + EX28DRAFT_3607 0.77 -0.4
266,277 + EX28DRAFT_3607 0.77 +0.2
266,277 + EX28DRAFT_3607 0.77 +0.4
266,277 + EX28DRAFT_3607 0.77 +0.1
266,277 + EX28DRAFT_3607 0.77 -0.0
266,305 - EX28DRAFT_3607 0.83 +0.3
266,330 - EX28DRAFT_3607 0.88 -0.9
266,370 - -0.4
266,382 + +0.0
266,382 + +0.3
266,459 + -0.4
266,460 - +0.1
266,460 - -0.5
266,662 - EX28DRAFT_3608 0.38 -1.0
266,699 + EX28DRAFT_3608 0.43 -0.3
266,699 + EX28DRAFT_3608 0.43 +0.2
266,700 - EX28DRAFT_3608 0.44 -0.0
266,700 - EX28DRAFT_3608 0.44 -0.4
266,946 + EX28DRAFT_3608 0.79 +0.1
267,068 + -0.1
267,069 - +0.3
267,176 + +0.2
267,436 + EX28DRAFT_3609 0.24 +0.5
267,532 + EX28DRAFT_3609 0.31 +0.3
267,532 + EX28DRAFT_3609 0.31 +0.2
267,532 + EX28DRAFT_3609 0.31 +0.8
267,532 + EX28DRAFT_3609 0.31 +0.3
267,532 + EX28DRAFT_3609 0.31 +1.1
267,533 - EX28DRAFT_3609 0.31 +1.1
267,533 - EX28DRAFT_3609 0.31 +0.4
267,533 - EX28DRAFT_3609 0.31 +0.2
267,533 - EX28DRAFT_3609 0.31 +0.3
267,533 - EX28DRAFT_3609 0.31 -0.1
267,595 - EX28DRAFT_3609 0.36 -1.4
267,714 + EX28DRAFT_3609 0.44 -0.3
267,714 + EX28DRAFT_3609 0.44 +0.4
267,720 + EX28DRAFT_3609 0.44 +1.0
267,720 + EX28DRAFT_3609 0.44 +0.5
267,721 - EX28DRAFT_3609 0.44 +0.1
267,774 + EX28DRAFT_3609 0.48 -0.8
267,822 + EX28DRAFT_3609 0.52 -0.4
267,850 + EX28DRAFT_3609 0.53 -0.6
267,862 + EX28DRAFT_3609 0.54 +0.1
267,862 + EX28DRAFT_3609 0.54 -0.4
267,863 - EX28DRAFT_3609 0.54 -0.0
267,863 - EX28DRAFT_3609 0.54 -0.4
267,863 - EX28DRAFT_3609 0.54 +0.3
267,863 - EX28DRAFT_3609 0.54 -0.4
267,863 - EX28DRAFT_3609 0.54 +0.3
267,863 - EX28DRAFT_3609 0.54 -0.3
267,976 - EX28DRAFT_3609 0.62 +0.3
268,056 + EX28DRAFT_3609 0.68 -0.1
268,057 - EX28DRAFT_3609 0.68 -0.2
268,341 + EX28DRAFT_3609 0.88 +0.1
268,446 + +0.0
268,446 + +0.9
268,446 + +0.2
268,447 - -0.0
268,447 - -0.2
268,510 + +0.3
268,567 + -0.0
268,568 - +0.3
268,597 + +0.2
268,597 + -0.5
268,597 + +0.2
268,597 + -0.2
268,598 - +0.1
268,598 - +0.2
268,643 + -0.3
268,644 - -0.3
268,653 - +0.4
268,697 + -0.7
268,698 - -0.6
268,773 + EX28DRAFT_3610 0.15 -1.1
268,773 + EX28DRAFT_3610 0.15 -0.1
268,780 + EX28DRAFT_3610 0.16 +0.0
268,780 + EX28DRAFT_3610 0.16 -0.3
268,803 + EX28DRAFT_3610 0.17 +0.1
268,804 - EX28DRAFT_3610 0.17 +0.4
268,804 - EX28DRAFT_3610 0.17 -0.2
268,815 + EX28DRAFT_3610 0.18 +0.5
268,815 + EX28DRAFT_3610 0.18 -0.5
268,815 + EX28DRAFT_3610 0.18 -0.2
268,815 + EX28DRAFT_3610 0.18 -0.2
268,817 + EX28DRAFT_3610 0.18 -0.4
268,817 + EX28DRAFT_3610 0.18 +0.4
268,818 - EX28DRAFT_3610 0.18 -1.3
268,856 + EX28DRAFT_3610 0.21 -0.1
268,890 + EX28DRAFT_3610 0.24 -0.0
268,924 + EX28DRAFT_3610 0.26 +0.1
268,925 - EX28DRAFT_3610 0.26 +0.8
268,925 - EX28DRAFT_3610 0.26 -0.3
269,046 - EX28DRAFT_3610 0.35 +0.1
269,216 + EX28DRAFT_3610 0.48 +0.2
269,217 - EX28DRAFT_3610 0.48 -0.2
269,272 - EX28DRAFT_3610 0.52 -0.5
269,272 - EX28DRAFT_3610 0.52 -0.7
269,282 + EX28DRAFT_3610 0.53 +0.6
269,342 + EX28DRAFT_3610 0.57 -0.1
269,343 - EX28DRAFT_3610 0.57 -0.3

Or see this region's nucleotide sequence