Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3567 and EX28DRAFT_3568 are separated by 409 nucleotides EX28DRAFT_3568 and EX28DRAFT_3569 overlap by 55 nucleotides EX28DRAFT_3569 and EX28DRAFT_3570 are separated by 38 nucleotides
EX28DRAFT_3567: EX28DRAFT_3567 - Uncharacterized conserved protein, at 229,257 to 230,033
_3567
EX28DRAFT_3568: EX28DRAFT_3568 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 230,443 to 231,180
_3568
EX28DRAFT_3569: EX28DRAFT_3569 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 231,126 to 231,812
_3569
EX28DRAFT_3570: EX28DRAFT_3570 - Uncharacterized conserved protein, at 231,851 to 232,309
_3570
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 229.527 kb on - strand, within EX28DRAFT_3567 at 229.570 kb on + strand, within EX28DRAFT_3567 at 229.570 kb on + strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.626 kb on - strand, within EX28DRAFT_3567 at 229.634 kb on + strand, within EX28DRAFT_3567 at 229.660 kb on - strand, within EX28DRAFT_3567 at 229.660 kb on - strand, within EX28DRAFT_3567 at 229.692 kb on + strand, within EX28DRAFT_3567 at 229.693 kb on - strand, within EX28DRAFT_3567 at 229.745 kb on + strand, within EX28DRAFT_3567 at 229.746 kb on - strand, within EX28DRAFT_3567 at 229.746 kb on - strand, within EX28DRAFT_3567 at 229.746 kb on - strand, within EX28DRAFT_3567 at 229.881 kb on - strand, within EX28DRAFT_3567 at 229.988 kb on + strand at 229.989 kb on - strand at 229.992 kb on + strand at 229.993 kb on - strand at 229.993 kb on - strand at 230.003 kb on + strand at 230.035 kb on + strand at 230.035 kb on + strand at 230.035 kb on + strand at 230.035 kb on + strand at 230.035 kb on + strand at 230.036 kb on - strand at 230.036 kb on - strand at 230.081 kb on + strand at 230.152 kb on + strand at 230.153 kb on - strand at 230.198 kb on - strand at 230.319 kb on + strand at 230.330 kb on + strand at 230.350 kb on + strand at 230.351 kb on - strand at 230.388 kb on + strand at 230.404 kb on - strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.442 kb on + strand at 230.443 kb on - strand at 230.443 kb on - strand at 230.443 kb on - strand at 230.443 kb on - strand at 230.466 kb on + strand at 230.467 kb on - strand at 230.551 kb on + strand, within EX28DRAFT_3568 at 230.551 kb on + strand, within EX28DRAFT_3568 at 230.574 kb on - strand, within EX28DRAFT_3568 at 230.741 kb on + strand, within EX28DRAFT_3568 at 230.741 kb on + strand, within EX28DRAFT_3568 at 230.742 kb on - strand, within EX28DRAFT_3568 at 230.818 kb on - strand, within EX28DRAFT_3568 at 230.924 kb on + strand, within EX28DRAFT_3568 at 230.936 kb on + strand, within EX28DRAFT_3568 at 230.936 kb on + strand, within EX28DRAFT_3568 at 230.937 kb on - strand, within EX28DRAFT_3568 at 230.940 kb on + strand, within EX28DRAFT_3568 at 230.941 kb on - strand, within EX28DRAFT_3568 at 230.988 kb on + strand, within EX28DRAFT_3568 at 230.988 kb on + strand, within EX28DRAFT_3568 at 231.043 kb on - strand, within EX28DRAFT_3568 at 231.055 kb on + strand, within EX28DRAFT_3568 at 231.055 kb on + strand, within EX28DRAFT_3568 at 231.056 kb on - strand, within EX28DRAFT_3568 at 231.073 kb on - strand, within EX28DRAFT_3568 at 231.073 kb on - strand, within EX28DRAFT_3568 at 231.109 kb on + strand at 231.152 kb on + strand at 231.152 kb on + strand at 231.153 kb on - strand at 231.257 kb on + strand, within EX28DRAFT_3569 at 231.258 kb on - strand, within EX28DRAFT_3569 at 231.263 kb on + strand, within EX28DRAFT_3569 at 231.303 kb on + strand, within EX28DRAFT_3569 at 231.303 kb on + strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.304 kb on - strand, within EX28DRAFT_3569 at 231.392 kb on + strand, within EX28DRAFT_3569 at 231.425 kb on - strand, within EX28DRAFT_3569 at 231.543 kb on - strand, within EX28DRAFT_3569 at 231.543 kb on - strand, within EX28DRAFT_3569 at 231.543 kb on - strand, within EX28DRAFT_3569 at 231.609 kb on + strand, within EX28DRAFT_3569 at 231.609 kb on + strand, within EX28DRAFT_3569 at 231.609 kb on + strand, within EX28DRAFT_3569 at 231.611 kb on + strand, within EX28DRAFT_3569 at 231.611 kb on + strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.612 kb on - strand, within EX28DRAFT_3569 at 231.665 kb on + strand, within EX28DRAFT_3569 at 231.665 kb on + strand, within EX28DRAFT_3569 at 231.665 kb on + strand, within EX28DRAFT_3569 at 231.666 kb on - strand, within EX28DRAFT_3569 at 231.684 kb on - strand, within EX28DRAFT_3569 at 231.725 kb on - strand, within EX28DRAFT_3569 at 231.749 kb on + strand at 231.749 kb on + strand at 231.749 kb on + strand at 231.750 kb on - strand at 231.794 kb on + strand at 231.795 kb on - strand at 231.808 kb on + strand at 231.808 kb on + strand at 231.910 kb on + strand, within EX28DRAFT_3570 at 231.910 kb on + strand, within EX28DRAFT_3570 at 232.016 kb on + strand, within EX28DRAFT_3570 at 232.017 kb on - strand, within EX28DRAFT_3570
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 229,527 - EX28DRAFT_3567 0.35 +0.5 229,570 + EX28DRAFT_3567 0.40 +0.4 229,570 + EX28DRAFT_3567 0.40 -0.2 229,571 - EX28DRAFT_3567 0.40 +0.6 229,571 - EX28DRAFT_3567 0.40 +0.2 229,571 - EX28DRAFT_3567 0.40 +0.1 229,571 - EX28DRAFT_3567 0.40 +0.1 229,571 - EX28DRAFT_3567 0.40 +0.1 229,571 - EX28DRAFT_3567 0.40 -0.1 229,626 - EX28DRAFT_3567 0.47 -0.5 229,634 + EX28DRAFT_3567 0.49 -0.1 229,660 - EX28DRAFT_3567 0.52 -0.4 229,660 - EX28DRAFT_3567 0.52 -0.3 229,692 + EX28DRAFT_3567 0.56 +0.2 229,693 - EX28DRAFT_3567 0.56 +0.1 229,745 + EX28DRAFT_3567 0.63 -0.1 229,746 - EX28DRAFT_3567 0.63 +0.5 229,746 - EX28DRAFT_3567 0.63 -0.2 229,746 - EX28DRAFT_3567 0.63 -0.0 229,881 - EX28DRAFT_3567 0.80 +0.7 229,988 + -0.1 229,989 - +0.3 229,992 + -0.1 229,993 - +0.2 229,993 - -0.5 230,003 + -0.3 230,035 + -0.0 230,035 + +1.0 230,035 + -0.5 230,035 + -0.1 230,035 + -0.2 230,036 - +0.9 230,036 - -1.3 230,081 + -0.2 230,152 + +0.5 230,153 - -0.2 230,198 - +0.0 230,319 + -0.1 230,330 + -0.2 230,350 + +0.9 230,351 - -0.1 230,388 + +0.2 230,404 - +0.1 230,442 + +0.0 230,442 + -0.2 230,442 + -0.2 230,442 + +0.1 230,442 + -0.3 230,443 - -0.2 230,443 - +1.4 230,443 - -1.8 230,443 - -0.1 230,466 + +0.1 230,467 - +0.4 230,551 + EX28DRAFT_3568 0.15 +0.3 230,551 + EX28DRAFT_3568 0.15 +0.3 230,574 - EX28DRAFT_3568 0.18 +0.3 230,741 + EX28DRAFT_3568 0.40 -0.4 230,741 + EX28DRAFT_3568 0.40 -0.4 230,742 - EX28DRAFT_3568 0.41 -0.0 230,818 - EX28DRAFT_3568 0.51 -0.5 230,924 + EX28DRAFT_3568 0.65 +0.5 230,936 + EX28DRAFT_3568 0.67 -0.4 230,936 + EX28DRAFT_3568 0.67 -0.0 230,937 - EX28DRAFT_3568 0.67 +1.0 230,940 + EX28DRAFT_3568 0.67 +0.2 230,941 - EX28DRAFT_3568 0.67 +0.6 230,988 + EX28DRAFT_3568 0.74 -0.3 230,988 + EX28DRAFT_3568 0.74 +0.4 231,043 - EX28DRAFT_3568 0.81 +1.3 231,055 + EX28DRAFT_3568 0.83 +0.3 231,055 + EX28DRAFT_3568 0.83 -0.1 231,056 - EX28DRAFT_3568 0.83 +0.3 231,073 - EX28DRAFT_3568 0.85 +0.1 231,073 - EX28DRAFT_3568 0.85 +0.6 231,109 + -0.2 231,152 + +3.5 231,152 + -0.4 231,153 - -0.3 231,257 + EX28DRAFT_3569 0.19 +0.1 231,258 - EX28DRAFT_3569 0.19 -0.3 231,263 + EX28DRAFT_3569 0.20 +0.4 231,303 + EX28DRAFT_3569 0.26 +0.8 231,303 + EX28DRAFT_3569 0.26 +0.3 231,304 - EX28DRAFT_3569 0.26 -0.3 231,304 - EX28DRAFT_3569 0.26 +0.3 231,304 - EX28DRAFT_3569 0.26 +0.0 231,304 - EX28DRAFT_3569 0.26 +0.4 231,392 + EX28DRAFT_3569 0.39 +0.3 231,425 - EX28DRAFT_3569 0.44 +0.5 231,543 - EX28DRAFT_3569 0.61 -0.3 231,543 - EX28DRAFT_3569 0.61 -1.2 231,543 - EX28DRAFT_3569 0.61 -2.0 231,609 + EX28DRAFT_3569 0.70 -0.1 231,609 + EX28DRAFT_3569 0.70 +0.0 231,609 + EX28DRAFT_3569 0.70 +0.2 231,611 + EX28DRAFT_3569 0.71 -0.1 231,611 + EX28DRAFT_3569 0.71 +0.5 231,612 - EX28DRAFT_3569 0.71 -1.7 231,612 - EX28DRAFT_3569 0.71 -1.0 231,612 - EX28DRAFT_3569 0.71 -0.8 231,612 - EX28DRAFT_3569 0.71 -0.5 231,612 - EX28DRAFT_3569 0.71 -0.1 231,665 + EX28DRAFT_3569 0.78 +0.1 231,665 + EX28DRAFT_3569 0.78 -0.4 231,665 + EX28DRAFT_3569 0.78 +0.3 231,666 - EX28DRAFT_3569 0.79 +1.9 231,684 - EX28DRAFT_3569 0.81 -0.7 231,725 - EX28DRAFT_3569 0.87 +0.0 231,749 + -1.0 231,749 + +0.3 231,749 + +0.7 231,750 - +1.0 231,794 + +0.6 231,795 - +0.2 231,808 + +0.2 231,808 + +0.4 231,910 + EX28DRAFT_3570 0.13 +0.3 231,910 + EX28DRAFT_3570 0.13 +0.3 232,016 + EX28DRAFT_3570 0.36 +0.0 232,017 - EX28DRAFT_3570 0.36 +0.0
Or see this region's nucleotide sequence