Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3539

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3537 and EX28DRAFT_3538 are separated by 179 nucleotidesEX28DRAFT_3538 and EX28DRAFT_3539 are separated by 17 nucleotidesEX28DRAFT_3539 and EX28DRAFT_3540 are separated by 182 nucleotides EX28DRAFT_3537: EX28DRAFT_3537 - Predicted transcriptional regulator, at 200,962 to 201,879 _3537 EX28DRAFT_3538: EX28DRAFT_3538 - 4-hydroxyphenylacetate 3-monooxygenase, reductase component, at 202,059 to 202,571 _3538 EX28DRAFT_3539: EX28DRAFT_3539 - 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component, at 202,589 to 204,151 _3539 EX28DRAFT_3540: EX28DRAFT_3540 - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 204,334 to 205,266 _3540 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 201.714 kb on + strand, within EX28DRAFT_3537at 201.742 kb on + strand, within EX28DRAFT_3537at 201.820 kb on + strandat 201.879 kb on + strandat 201.880 kb on - strandat 201.893 kb on - strandat 201.894 kb on + strandat 201.898 kb on + strandat 201.898 kb on + strandat 201.903 kb on - strandat 201.975 kb on + strandat 201.975 kb on + strandat 201.976 kb on - strandat 202.002 kb on + strandat 202.111 kb on + strand, within EX28DRAFT_3538at 202.111 kb on + strand, within EX28DRAFT_3538at 202.112 kb on - strand, within EX28DRAFT_3538at 202.145 kb on + strand, within EX28DRAFT_3538at 202.166 kb on - strand, within EX28DRAFT_3538at 202.166 kb on - strand, within EX28DRAFT_3538at 202.564 kb on - strandat 202.771 kb on - strand, within EX28DRAFT_3539at 202.978 kb on + strand, within EX28DRAFT_3539at 202.979 kb on - strand, within EX28DRAFT_3539at 202.979 kb on - strand, within EX28DRAFT_3539at 203.049 kb on + strand, within EX28DRAFT_3539at 203.050 kb on - strand, within EX28DRAFT_3539at 203.544 kb on + strand, within EX28DRAFT_3539at 203.628 kb on + strand, within EX28DRAFT_3539at 203.732 kb on - strand, within EX28DRAFT_3539at 203.757 kb on + strand, within EX28DRAFT_3539at 203.985 kb on + strand, within EX28DRAFT_3539at 204.057 kb on + strandat 204.057 kb on + strandat 204.061 kb on + strandat 204.061 kb on + strandat 204.063 kb on + strandat 204.063 kb on + strandat 204.063 kb on + strandat 204.063 kb on + strandat 204.064 kb on - strandat 204.064 kb on - strandat 204.064 kb on - strandat 204.064 kb on - strandat 204.064 kb on - strandat 204.092 kb on + strandat 204.151 kb on + strandat 204.793 kb on - strand, within EX28DRAFT_3540at 204.933 kb on - strand, within EX28DRAFT_3540

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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201,714 + EX28DRAFT_3537 0.82 +0.4
201,742 + EX28DRAFT_3537 0.85 +0.6
201,820 + -0.3
201,879 + +0.3
201,880 - -0.8
201,893 - +0.0
201,894 + -0.4
201,898 + -0.1
201,898 + -1.0
201,903 - +0.1
201,975 + -0.7
201,975 + -0.0
201,976 - +0.3
202,002 + -2.9
202,111 + EX28DRAFT_3538 0.10 +0.6
202,111 + EX28DRAFT_3538 0.10 +0.1
202,112 - EX28DRAFT_3538 0.10 +0.0
202,145 + EX28DRAFT_3538 0.17 -1.1
202,166 - EX28DRAFT_3538 0.21 +1.8
202,166 - EX28DRAFT_3538 0.21 -0.1
202,564 - -0.4
202,771 - EX28DRAFT_3539 0.12 +0.3
202,978 + EX28DRAFT_3539 0.25 -0.1
202,979 - EX28DRAFT_3539 0.25 -1.1
202,979 - EX28DRAFT_3539 0.25 -1.7
203,049 + EX28DRAFT_3539 0.29 -0.1
203,050 - EX28DRAFT_3539 0.29 -0.7
203,544 + EX28DRAFT_3539 0.61 -0.0
203,628 + EX28DRAFT_3539 0.66 -0.5
203,732 - EX28DRAFT_3539 0.73 +0.3
203,757 + EX28DRAFT_3539 0.75 +0.1
203,985 + EX28DRAFT_3539 0.89 +0.0
204,057 + -0.2
204,057 + -0.1
204,061 + +0.1
204,061 + -0.0
204,063 + +0.2
204,063 + +1.6
204,063 + -2.3
204,063 + -0.1
204,064 - +0.8
204,064 - -0.1
204,064 - +0.0
204,064 - +0.0
204,064 - +0.4
204,092 + -0.4
204,151 + -0.1
204,793 - EX28DRAFT_3540 0.49 -0.2
204,933 - EX28DRAFT_3540 0.64 -0.5

Or see this region's nucleotide sequence