Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3527

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3525 and EX28DRAFT_3526 are separated by 0 nucleotidesEX28DRAFT_3526 and EX28DRAFT_3527 are separated by 51 nucleotidesEX28DRAFT_3527 and EX28DRAFT_3528 are separated by 101 nucleotidesEX28DRAFT_3528 and EX28DRAFT_3529 are separated by 47 nucleotides EX28DRAFT_3525: EX28DRAFT_3525 - hypothetical protein, at 188,892 to 189,404 _3525 EX28DRAFT_3526: EX28DRAFT_3526 - type VI secretion system effector, Hcp1 family, at 189,405 to 189,896 _3526 EX28DRAFT_3527: EX28DRAFT_3527 - Restriction endonuclease, at 189,948 to 191,130 _3527 EX28DRAFT_3528: EX28DRAFT_3528 - Putative threonine efflux protein, at 191,232 to 191,879 _3528 EX28DRAFT_3529: EX28DRAFT_3529 - AraC-type DNA-binding domain-containing proteins, at 191,927 to 192,670 _3529 Position (kb) 189 190 191 192Strain fitness (log2 ratio) -2 -1 0 1at 188.980 kb on + strand, within EX28DRAFT_3525at 189.056 kb on + strand, within EX28DRAFT_3525at 189.197 kb on - strand, within EX28DRAFT_3525at 189.206 kb on - strand, within EX28DRAFT_3525at 189.206 kb on - strand, within EX28DRAFT_3525at 189.231 kb on - strand, within EX28DRAFT_3525at 189.422 kb on + strandat 189.422 kb on + strandat 189.422 kb on + strandat 189.423 kb on - strandat 189.450 kb on - strandat 189.455 kb on - strand, within EX28DRAFT_3526at 189.510 kb on + strand, within EX28DRAFT_3526at 189.511 kb on - strand, within EX28DRAFT_3526at 189.520 kb on + strand, within EX28DRAFT_3526at 189.520 kb on + strand, within EX28DRAFT_3526at 189.520 kb on + strand, within EX28DRAFT_3526at 189.521 kb on - strand, within EX28DRAFT_3526at 189.616 kb on - strand, within EX28DRAFT_3526at 189.624 kb on - strand, within EX28DRAFT_3526at 189.644 kb on + strand, within EX28DRAFT_3526at 189.898 kb on + strandat 189.898 kb on + strandat 189.899 kb on - strandat 189.899 kb on - strandat 189.950 kb on - strandat 189.963 kb on + strandat 190.014 kb on + strandat 190.043 kb on + strandat 190.043 kb on + strandat 190.062 kb on + strandat 190.080 kb on + strand, within EX28DRAFT_3527at 190.081 kb on - strand, within EX28DRAFT_3527at 190.091 kb on + strand, within EX28DRAFT_3527at 190.091 kb on + strand, within EX28DRAFT_3527at 190.092 kb on - strand, within EX28DRAFT_3527at 190.198 kb on - strand, within EX28DRAFT_3527at 190.223 kb on + strand, within EX28DRAFT_3527at 190.223 kb on + strand, within EX28DRAFT_3527at 190.224 kb on - strand, within EX28DRAFT_3527at 190.224 kb on - strand, within EX28DRAFT_3527at 190.235 kb on + strand, within EX28DRAFT_3527at 190.236 kb on - strand, within EX28DRAFT_3527at 190.282 kb on - strand, within EX28DRAFT_3527at 190.388 kb on - strand, within EX28DRAFT_3527at 190.534 kb on + strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.537 kb on + strand, within EX28DRAFT_3527at 190.538 kb on - strand, within EX28DRAFT_3527at 190.582 kb on + strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.767 kb on - strand, within EX28DRAFT_3527at 190.805 kb on + strand, within EX28DRAFT_3527at 190.847 kb on + strand, within EX28DRAFT_3527at 190.858 kb on + strand, within EX28DRAFT_3527at 190.858 kb on + strand, within EX28DRAFT_3527at 190.858 kb on + strand, within EX28DRAFT_3527at 190.859 kb on - strand, within EX28DRAFT_3527at 190.863 kb on - strand, within EX28DRAFT_3527at 190.867 kb on + strand, within EX28DRAFT_3527at 190.868 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 191.031 kb on + strandat 191.031 kb on + strandat 191.032 kb on - strandat 191.032 kb on - strandat 191.032 kb on - strandat 191.090 kb on + strandat 191.090 kb on + strandat 191.091 kb on - strandat 191.091 kb on - strandat 191.184 kb on - strandat 191.186 kb on + strandat 191.186 kb on + strandat 191.189 kb on + strandat 191.193 kb on + strandat 191.193 kb on + strandat 191.629 kb on + strand, within EX28DRAFT_3528at 191.657 kb on + strand, within EX28DRAFT_3528at 191.657 kb on + strand, within EX28DRAFT_3528at 191.670 kb on - strand, within EX28DRAFT_3528at 191.670 kb on - strand, within EX28DRAFT_3528at 191.713 kb on + strand, within EX28DRAFT_3528at 191.713 kb on + strand, within EX28DRAFT_3528at 191.714 kb on - strand, within EX28DRAFT_3528at 191.714 kb on - strand, within EX28DRAFT_3528at 191.714 kb on - strand, within EX28DRAFT_3528at 191.817 kb on + strandat 191.818 kb on - strandat 191.912 kb on - strandat 191.928 kb on + strandat 191.928 kb on + strandat 191.932 kb on + strandat 191.932 kb on + strandat 191.933 kb on - strandat 191.933 kb on - strandat 191.943 kb on - strandat 191.985 kb on + strandat 191.986 kb on - strandat 192.053 kb on - strand, within EX28DRAFT_3529

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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188,980 + EX28DRAFT_3525 0.17 -0.5
189,056 + EX28DRAFT_3525 0.32 -0.1
189,197 - EX28DRAFT_3525 0.59 -0.9
189,206 - EX28DRAFT_3525 0.61 +0.0
189,206 - EX28DRAFT_3525 0.61 +0.2
189,231 - EX28DRAFT_3525 0.66 +0.8
189,422 + +0.4
189,422 + +0.2
189,422 + +0.1
189,423 - +0.0
189,450 - +0.4
189,455 - EX28DRAFT_3526 0.10 +0.3
189,510 + EX28DRAFT_3526 0.21 -1.2
189,511 - EX28DRAFT_3526 0.22 +0.2
189,520 + EX28DRAFT_3526 0.23 +0.1
189,520 + EX28DRAFT_3526 0.23 +0.1
189,520 + EX28DRAFT_3526 0.23 -0.0
189,521 - EX28DRAFT_3526 0.24 +0.8
189,616 - EX28DRAFT_3526 0.43 -0.3
189,624 - EX28DRAFT_3526 0.45 +0.2
189,644 + EX28DRAFT_3526 0.49 -0.1
189,898 + +0.4
189,898 + +0.1
189,899 - +0.4
189,899 - -0.1
189,950 - -0.1
189,963 + -0.7
190,014 + -0.1
190,043 + -1.5
190,043 + -0.4
190,062 + -1.4
190,080 + EX28DRAFT_3527 0.11 +0.5
190,081 - EX28DRAFT_3527 0.11 -0.5
190,091 + EX28DRAFT_3527 0.12 -0.5
190,091 + EX28DRAFT_3527 0.12 -0.3
190,092 - EX28DRAFT_3527 0.12 -1.2
190,198 - EX28DRAFT_3527 0.21 -0.7
190,223 + EX28DRAFT_3527 0.23 -0.0
190,223 + EX28DRAFT_3527 0.23 +0.0
190,224 - EX28DRAFT_3527 0.23 +0.0
190,224 - EX28DRAFT_3527 0.23 -1.3
190,235 + EX28DRAFT_3527 0.24 +0.0
190,236 - EX28DRAFT_3527 0.24 +0.2
190,282 - EX28DRAFT_3527 0.28 -0.1
190,388 - EX28DRAFT_3527 0.37 -1.3
190,534 + EX28DRAFT_3527 0.50 -0.2
190,535 - EX28DRAFT_3527 0.50 -1.4
190,535 - EX28DRAFT_3527 0.50 +0.1
190,535 - EX28DRAFT_3527 0.50 +0.9
190,535 - EX28DRAFT_3527 0.50 +0.2
190,537 + EX28DRAFT_3527 0.50 -0.2
190,538 - EX28DRAFT_3527 0.50 +0.4
190,582 + EX28DRAFT_3527 0.54 +0.1
190,583 - EX28DRAFT_3527 0.54 +0.0
190,583 - EX28DRAFT_3527 0.54 +0.2
190,583 - EX28DRAFT_3527 0.54 -0.3
190,583 - EX28DRAFT_3527 0.54 -0.6
190,668 + EX28DRAFT_3527 0.61 +0.2
190,668 + EX28DRAFT_3527 0.61 -0.2
190,668 + EX28DRAFT_3527 0.61 +0.1
190,668 + EX28DRAFT_3527 0.61 -0.1
190,767 - EX28DRAFT_3527 0.69 +0.0
190,805 + EX28DRAFT_3527 0.72 -0.7
190,847 + EX28DRAFT_3527 0.76 -0.1
190,858 + EX28DRAFT_3527 0.77 +0.2
190,858 + EX28DRAFT_3527 0.77 +0.0
190,858 + EX28DRAFT_3527 0.77 -0.2
190,859 - EX28DRAFT_3527 0.77 +0.4
190,863 - EX28DRAFT_3527 0.77 -0.6
190,867 + EX28DRAFT_3527 0.78 -0.7
190,868 - EX28DRAFT_3527 0.78 -0.2
190,962 - EX28DRAFT_3527 0.86 -1.1
190,962 - EX28DRAFT_3527 0.86 -0.1
190,962 - EX28DRAFT_3527 0.86 -2.7
190,962 - EX28DRAFT_3527 0.86 -2.3
191,031 + +0.1
191,031 + -0.2
191,032 - -0.8
191,032 - +0.2
191,032 - +0.1
191,090 + +0.5
191,090 + +0.1
191,091 - -2.7
191,091 - +0.2
191,184 - +0.3
191,186 + -0.0
191,186 + +0.4
191,189 + +0.8
191,193 + -0.5
191,193 + -0.9
191,629 + EX28DRAFT_3528 0.61 -0.1
191,657 + EX28DRAFT_3528 0.66 -0.7
191,657 + EX28DRAFT_3528 0.66 +0.1
191,670 - EX28DRAFT_3528 0.68 -0.4
191,670 - EX28DRAFT_3528 0.68 +0.5
191,713 + EX28DRAFT_3528 0.74 +0.1
191,713 + EX28DRAFT_3528 0.74 +0.1
191,714 - EX28DRAFT_3528 0.74 -0.6
191,714 - EX28DRAFT_3528 0.74 +0.1
191,714 - EX28DRAFT_3528 0.74 +0.4
191,817 + -0.2
191,818 - +1.0
191,912 - -1.0
191,928 + -1.0
191,928 + +0.6
191,932 + +0.2
191,932 + -0.3
191,933 - +0.2
191,933 - -0.2
191,943 - +1.0
191,985 + -1.6
191,986 - +0.6
192,053 - EX28DRAFT_3529 0.17 +0.6

Or see this region's nucleotide sequence