Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3497 and EX28DRAFT_3498 are separated by 125 nucleotides EX28DRAFT_3498 and EX28DRAFT_3499 are separated by 30 nucleotides EX28DRAFT_3499 and EX28DRAFT_3500 overlap by 4 nucleotides EX28DRAFT_3500 and EX28DRAFT_3501 overlap by 1 nucleotides
EX28DRAFT_3497: EX28DRAFT_3497 - hypothetical protein, at 159,747 to 160,988
_3497
EX28DRAFT_3498: EX28DRAFT_3498 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 161,114 to 161,935
_3498
EX28DRAFT_3499: EX28DRAFT_3499 - Arabinose efflux permease, at 161,966 to 163,585
_3499
EX28DRAFT_3500: EX28DRAFT_3500 - Predicted membrane protein, at 163,582 to 163,989
_3500
EX28DRAFT_3501: EX28DRAFT_3501 - Predicted metal-dependent hydrolase with the TIM-barrel fold, at 163,989 to 165,860
_3501
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 160.991 kb on + strand at 160.991 kb on + strand at 160.992 kb on - strand at 160.992 kb on - strand at 160.992 kb on - strand at 161.022 kb on + strand at 161.022 kb on + strand at 161.045 kb on + strand at 161.045 kb on + strand at 161.046 kb on - strand at 161.116 kb on - strand at 161.783 kb on + strand, within EX28DRAFT_3498 at 161.812 kb on - strand, within EX28DRAFT_3498 at 161.812 kb on - strand, within EX28DRAFT_3498 at 161.812 kb on - strand, within EX28DRAFT_3498 at 161.895 kb on + strand at 161.899 kb on - strand at 161.935 kb on + strand at 161.935 kb on + strand at 161.936 kb on - strand at 161.936 kb on - strand at 161.936 kb on - strand at 161.936 kb on - strand at 161.967 kb on + strand at 162.144 kb on + strand, within EX28DRAFT_3499 at 162.145 kb on - strand, within EX28DRAFT_3499 at 162.240 kb on + strand, within EX28DRAFT_3499 at 162.240 kb on + strand, within EX28DRAFT_3499 at 162.241 kb on - strand, within EX28DRAFT_3499 at 162.756 kb on - strand, within EX28DRAFT_3499 at 162.892 kb on - strand, within EX28DRAFT_3499 at 163.299 kb on + strand, within EX28DRAFT_3499 at 163.300 kb on - strand, within EX28DRAFT_3499 at 163.300 kb on - strand, within EX28DRAFT_3499 at 163.303 kb on + strand, within EX28DRAFT_3499 at 163.303 kb on + strand, within EX28DRAFT_3499 at 163.303 kb on + strand, within EX28DRAFT_3499 at 163.304 kb on - strand, within EX28DRAFT_3499 at 163.304 kb on - strand, within EX28DRAFT_3499 at 163.366 kb on + strand, within EX28DRAFT_3499 at 163.767 kb on - strand, within EX28DRAFT_3500 at 163.767 kb on - strand, within EX28DRAFT_3500 at 163.910 kb on + strand, within EX28DRAFT_3500 at 163.910 kb on + strand, within EX28DRAFT_3500 at 163.911 kb on - strand, within EX28DRAFT_3500 at 164.320 kb on + strand, within EX28DRAFT_3501 at 164.321 kb on - strand, within EX28DRAFT_3501 at 164.363 kb on + strand, within EX28DRAFT_3501 at 164.363 kb on + strand, within EX28DRAFT_3501 at 164.461 kb on + strand, within EX28DRAFT_3501 at 164.461 kb on + strand, within EX28DRAFT_3501 at 164.462 kb on - strand, within EX28DRAFT_3501 at 164.524 kb on + strand, within EX28DRAFT_3501
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 160,991 + +0.2 160,991 + -0.2 160,992 - +1.3 160,992 - +0.8 160,992 - -0.9 161,022 + +0.2 161,022 + -0.0 161,045 + +0.7 161,045 + -1.0 161,046 - -0.5 161,116 - -0.2 161,783 + EX28DRAFT_3498 0.81 +0.1 161,812 - EX28DRAFT_3498 0.85 -1.8 161,812 - EX28DRAFT_3498 0.85 +4.1 161,812 - EX28DRAFT_3498 0.85 +1.2 161,895 + -0.1 161,899 - +0.1 161,935 + +0.5 161,935 + +0.0 161,936 - +0.8 161,936 - +0.5 161,936 - -0.8 161,936 - +0.5 161,967 + +0.1 162,144 + EX28DRAFT_3499 0.11 -0.1 162,145 - EX28DRAFT_3499 0.11 -0.3 162,240 + EX28DRAFT_3499 0.17 -0.1 162,240 + EX28DRAFT_3499 0.17 -0.4 162,241 - EX28DRAFT_3499 0.17 -0.1 162,756 - EX28DRAFT_3499 0.49 +0.1 162,892 - EX28DRAFT_3499 0.57 +0.5 163,299 + EX28DRAFT_3499 0.82 +0.6 163,300 - EX28DRAFT_3499 0.82 -0.2 163,300 - EX28DRAFT_3499 0.82 -0.5 163,303 + EX28DRAFT_3499 0.83 -0.7 163,303 + EX28DRAFT_3499 0.83 -0.6 163,303 + EX28DRAFT_3499 0.83 +0.3 163,304 - EX28DRAFT_3499 0.83 -0.0 163,304 - EX28DRAFT_3499 0.83 -0.1 163,366 + EX28DRAFT_3499 0.86 -0.5 163,767 - EX28DRAFT_3500 0.45 +0.1 163,767 - EX28DRAFT_3500 0.45 -0.4 163,910 + EX28DRAFT_3500 0.80 -0.8 163,910 + EX28DRAFT_3500 0.80 -0.2 163,911 - EX28DRAFT_3500 0.81 +0.0 164,320 + EX28DRAFT_3501 0.18 -0.5 164,321 - EX28DRAFT_3501 0.18 +0.4 164,363 + EX28DRAFT_3501 0.20 +0.1 164,363 + EX28DRAFT_3501 0.20 +0.2 164,461 + EX28DRAFT_3501 0.25 -0.1 164,461 + EX28DRAFT_3501 0.25 +0.8 164,462 - EX28DRAFT_3501 0.25 -0.2 164,524 + EX28DRAFT_3501 0.29 -0.1
Or see this region's nucleotide sequence