Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3488

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3485 and EX28DRAFT_3486 are separated by 146 nucleotidesEX28DRAFT_3486 and EX28DRAFT_3487 are separated by 54 nucleotidesEX28DRAFT_3487 and EX28DRAFT_3488 are separated by 90 nucleotidesEX28DRAFT_3488 and EX28DRAFT_3489 are separated by 163 nucleotides EX28DRAFT_3485: EX28DRAFT_3485 - hypothetical protein, at 148,263 to 150,107 _3485 EX28DRAFT_3486: EX28DRAFT_3486 - hypothetical protein, at 150,254 to 150,382 _3486 EX28DRAFT_3487: EX28DRAFT_3487 - hypothetical protein, at 150,437 to 150,904 _3487 EX28DRAFT_3488: EX28DRAFT_3488 - Integrase, at 150,995 to 152,245 _3488 EX28DRAFT_3489: EX28DRAFT_3489 - Predicted restriction endonuclease, at 152,409 to 153,278 _3489 Position (kb) 150 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 150.016 kb on - strandat 150.032 kb on + strandat 150.033 kb on - strandat 150.115 kb on + strandat 150.153 kb on - strandat 150.162 kb on + strandat 150.162 kb on + strandat 150.197 kb on + strandat 150.202 kb on - strandat 150.216 kb on + strandat 150.226 kb on + strandat 150.260 kb on - strandat 150.472 kb on + strandat 150.472 kb on + strandat 150.473 kb on - strandat 150.473 kb on - strandat 150.473 kb on - strandat 150.473 kb on - strandat 150.478 kb on - strandat 150.512 kb on - strand, within EX28DRAFT_3487at 150.649 kb on - strand, within EX28DRAFT_3487at 150.769 kb on - strand, within EX28DRAFT_3487at 150.770 kb on + strand, within EX28DRAFT_3487at 150.956 kb on + strandat 150.997 kb on - strandat 151.023 kb on - strandat 151.035 kb on + strandat 151.074 kb on + strandat 151.075 kb on - strandat 151.115 kb on + strandat 151.115 kb on + strandat 151.116 kb on - strandat 151.285 kb on + strand, within EX28DRAFT_3488at 151.331 kb on + strand, within EX28DRAFT_3488at 151.332 kb on - strand, within EX28DRAFT_3488at 151.332 kb on - strand, within EX28DRAFT_3488at 151.344 kb on + strand, within EX28DRAFT_3488at 151.344 kb on + strand, within EX28DRAFT_3488at 151.446 kb on - strand, within EX28DRAFT_3488at 151.446 kb on - strand, within EX28DRAFT_3488at 151.446 kb on - strand, within EX28DRAFT_3488at 151.478 kb on - strand, within EX28DRAFT_3488at 151.481 kb on + strand, within EX28DRAFT_3488at 151.482 kb on - strand, within EX28DRAFT_3488at 151.512 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.516 kb on - strand, within EX28DRAFT_3488at 151.516 kb on - strand, within EX28DRAFT_3488at 151.532 kb on + strand, within EX28DRAFT_3488at 151.533 kb on - strand, within EX28DRAFT_3488at 151.605 kb on + strand, within EX28DRAFT_3488at 151.605 kb on + strand, within EX28DRAFT_3488at 151.619 kb on - strand, within EX28DRAFT_3488at 151.719 kb on + strand, within EX28DRAFT_3488at 151.720 kb on - strand, within EX28DRAFT_3488at 151.775 kb on - strand, within EX28DRAFT_3488at 151.829 kb on + strand, within EX28DRAFT_3488at 151.830 kb on - strand, within EX28DRAFT_3488at 151.841 kb on + strand, within EX28DRAFT_3488at 151.902 kb on + strand, within EX28DRAFT_3488at 151.903 kb on - strand, within EX28DRAFT_3488at 151.903 kb on - strand, within EX28DRAFT_3488at 151.952 kb on + strand, within EX28DRAFT_3488at 151.953 kb on - strand, within EX28DRAFT_3488at 151.953 kb on - strand, within EX28DRAFT_3488at 151.977 kb on + strand, within EX28DRAFT_3488at 151.978 kb on - strand, within EX28DRAFT_3488at 151.978 kb on - strand, within EX28DRAFT_3488at 151.981 kb on + strand, within EX28DRAFT_3488at 151.994 kb on + strand, within EX28DRAFT_3488at 151.994 kb on + strand, within EX28DRAFT_3488at 152.003 kb on - strand, within EX28DRAFT_3488at 152.136 kb on + strandat 152.136 kb on + strandat 152.136 kb on + strandat 152.136 kb on + strandat 152.136 kb on + strandat 152.169 kb on + strandat 152.170 kb on - strandat 152.196 kb on + strandat 152.196 kb on + strandat 152.196 kb on + strandat 152.197 kb on - strandat 152.197 kb on - strandat 152.213 kb on + strandat 152.214 kb on - strandat 152.219 kb on + strandat 152.219 kb on + strandat 152.220 kb on - strandat 152.220 kb on - strandat 152.224 kb on - strandat 152.374 kb on - strandat 152.380 kb on - strandat 152.595 kb on - strand, within EX28DRAFT_3489at 152.721 kb on - strand, within EX28DRAFT_3489at 152.743 kb on + strand, within EX28DRAFT_3489at 152.743 kb on + strand, within EX28DRAFT_3489at 152.743 kb on + strand, within EX28DRAFT_3489at 152.744 kb on - strand, within EX28DRAFT_3489at 152.744 kb on - strand, within EX28DRAFT_3489at 152.747 kb on + strand, within EX28DRAFT_3489at 152.747 kb on + strand, within EX28DRAFT_3489at 152.748 kb on - strand, within EX28DRAFT_3489at 152.748 kb on - strand, within EX28DRAFT_3489at 152.748 kb on - strand, within EX28DRAFT_3489at 152.749 kb on + strand, within EX28DRAFT_3489at 152.749 kb on + strand, within EX28DRAFT_3489at 152.750 kb on - strand, within EX28DRAFT_3489at 152.750 kb on - strand, within EX28DRAFT_3489at 152.750 kb on - strand, within EX28DRAFT_3489at 152.757 kb on + strand, within EX28DRAFT_3489at 152.757 kb on + strand, within EX28DRAFT_3489at 152.757 kb on + strand, within EX28DRAFT_3489at 152.844 kb on - strand, within EX28DRAFT_3489at 152.844 kb on - strand, within EX28DRAFT_3489at 152.844 kb on - strand, within EX28DRAFT_3489at 152.951 kb on + strand, within EX28DRAFT_3489at 152.952 kb on - strand, within EX28DRAFT_3489at 152.952 kb on - strand, within EX28DRAFT_3489at 152.969 kb on + strand, within EX28DRAFT_3489at 152.984 kb on + strand, within EX28DRAFT_3489at 153.011 kb on + strand, within EX28DRAFT_3489at 153.107 kb on + strand, within EX28DRAFT_3489

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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150,016 - +0.2
150,032 + -1.2
150,033 - -0.9
150,115 + -0.1
150,153 - +1.5
150,162 + -0.2
150,162 + -0.1
150,197 + -0.0
150,202 - +0.1
150,216 + +0.1
150,226 + +0.9
150,260 - +0.3
150,472 + -0.2
150,472 + -0.0
150,473 - +0.4
150,473 - -0.1
150,473 - -0.4
150,473 - +0.1
150,478 - -0.4
150,512 - EX28DRAFT_3487 0.16 +0.5
150,649 - EX28DRAFT_3487 0.45 -0.1
150,769 - EX28DRAFT_3487 0.71 +0.3
150,770 + EX28DRAFT_3487 0.71 +0.6
150,956 + +0.1
150,997 - +0.3
151,023 - -0.8
151,035 + -0.0
151,074 + +0.6
151,075 - -0.3
151,115 + -0.1
151,115 + -0.4
151,116 - +0.4
151,285 + EX28DRAFT_3488 0.23 -0.8
151,331 + EX28DRAFT_3488 0.27 -0.1
151,332 - EX28DRAFT_3488 0.27 -0.4
151,332 - EX28DRAFT_3488 0.27 -1.1
151,344 + EX28DRAFT_3488 0.28 +0.1
151,344 + EX28DRAFT_3488 0.28 -0.3
151,446 - EX28DRAFT_3488 0.36 -0.3
151,446 - EX28DRAFT_3488 0.36 -0.7
151,446 - EX28DRAFT_3488 0.36 -0.4
151,478 - EX28DRAFT_3488 0.39 -1.2
151,481 + EX28DRAFT_3488 0.39 -1.2
151,482 - EX28DRAFT_3488 0.39 -0.0
151,512 + EX28DRAFT_3488 0.41 +0.9
151,515 + EX28DRAFT_3488 0.42 -0.3
151,515 + EX28DRAFT_3488 0.42 +0.1
151,515 + EX28DRAFT_3488 0.42 -0.1
151,515 + EX28DRAFT_3488 0.42 +0.1
151,515 + EX28DRAFT_3488 0.42 +0.5
151,516 - EX28DRAFT_3488 0.42 -2.4
151,516 - EX28DRAFT_3488 0.42 -0.4
151,532 + EX28DRAFT_3488 0.43 -0.5
151,533 - EX28DRAFT_3488 0.43 +0.0
151,605 + EX28DRAFT_3488 0.49 -0.2
151,605 + EX28DRAFT_3488 0.49 +1.5
151,619 - EX28DRAFT_3488 0.50 +0.1
151,719 + EX28DRAFT_3488 0.58 +0.1
151,720 - EX28DRAFT_3488 0.58 -3.0
151,775 - EX28DRAFT_3488 0.62 +0.1
151,829 + EX28DRAFT_3488 0.67 -0.2
151,830 - EX28DRAFT_3488 0.67 -0.6
151,841 + EX28DRAFT_3488 0.68 +0.0
151,902 + EX28DRAFT_3488 0.73 +0.2
151,903 - EX28DRAFT_3488 0.73 +0.1
151,903 - EX28DRAFT_3488 0.73 +0.2
151,952 + EX28DRAFT_3488 0.76 +0.4
151,953 - EX28DRAFT_3488 0.77 -0.1
151,953 - EX28DRAFT_3488 0.77 +0.4
151,977 + EX28DRAFT_3488 0.78 -0.4
151,978 - EX28DRAFT_3488 0.79 -0.2
151,978 - EX28DRAFT_3488 0.79 -0.1
151,981 + EX28DRAFT_3488 0.79 +0.2
151,994 + EX28DRAFT_3488 0.80 -0.1
151,994 + EX28DRAFT_3488 0.80 -0.1
152,003 - EX28DRAFT_3488 0.81 +0.7
152,136 + -0.7
152,136 + -2.1
152,136 + -0.3
152,136 + +0.9
152,136 + -1.6
152,169 + +0.1
152,170 - -0.3
152,196 + -0.1
152,196 + +0.9
152,196 + -0.9
152,197 - +0.4
152,197 - +0.5
152,213 + -0.3
152,214 - -0.7
152,219 + +0.3
152,219 + +4.5
152,220 - -0.3
152,220 - +0.1
152,224 - -1.2
152,374 - -0.0
152,380 - -1.3
152,595 - EX28DRAFT_3489 0.21 +0.0
152,721 - EX28DRAFT_3489 0.36 -0.3
152,743 + EX28DRAFT_3489 0.38 +0.2
152,743 + EX28DRAFT_3489 0.38 -0.4
152,743 + EX28DRAFT_3489 0.38 -0.3
152,744 - EX28DRAFT_3489 0.39 -0.1
152,744 - EX28DRAFT_3489 0.39 +0.3
152,747 + EX28DRAFT_3489 0.39 -0.5
152,747 + EX28DRAFT_3489 0.39 -0.1
152,748 - EX28DRAFT_3489 0.39 -1.3
152,748 - EX28DRAFT_3489 0.39 +0.5
152,748 - EX28DRAFT_3489 0.39 -0.2
152,749 + EX28DRAFT_3489 0.39 -0.2
152,749 + EX28DRAFT_3489 0.39 -0.5
152,750 - EX28DRAFT_3489 0.39 -0.1
152,750 - EX28DRAFT_3489 0.39 +0.3
152,750 - EX28DRAFT_3489 0.39 -0.6
152,757 + EX28DRAFT_3489 0.40 -0.2
152,757 + EX28DRAFT_3489 0.40 +0.1
152,757 + EX28DRAFT_3489 0.40 +0.5
152,844 - EX28DRAFT_3489 0.50 +0.7
152,844 - EX28DRAFT_3489 0.50 -0.2
152,844 - EX28DRAFT_3489 0.50 +0.0
152,951 + EX28DRAFT_3489 0.62 +1.4
152,952 - EX28DRAFT_3489 0.62 +0.1
152,952 - EX28DRAFT_3489 0.62 +0.5
152,969 + EX28DRAFT_3489 0.64 +0.1
152,984 + EX28DRAFT_3489 0.66 -0.2
153,011 + EX28DRAFT_3489 0.69 +0.7
153,107 + EX28DRAFT_3489 0.80 -0.5

Or see this region's nucleotide sequence