Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3471

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3468 and EX28DRAFT_3469 are separated by 196 nucleotidesEX28DRAFT_3469 and EX28DRAFT_3470 are separated by 10 nucleotidesEX28DRAFT_3470 and EX28DRAFT_3471 are separated by 23 nucleotidesEX28DRAFT_3471 and EX28DRAFT_3472 are separated by 10 nucleotidesEX28DRAFT_3472 and EX28DRAFT_3473 are separated by 80 nucleotides EX28DRAFT_3468: EX28DRAFT_3468 - YecR-like lipoprotein, at 139,670 to 139,990 _3468 EX28DRAFT_3469: EX28DRAFT_3469 - hypothetical protein, at 140,187 to 140,597 _3469 EX28DRAFT_3470: EX28DRAFT_3470 - hypothetical protein, at 140,608 to 140,898 _3470 EX28DRAFT_3471: EX28DRAFT_3471 - hypothetical protein, at 140,922 to 141,128 _3471 EX28DRAFT_3472: EX28DRAFT_3472 - Phage integrase family, at 141,139 to 141,699 _3472 EX28DRAFT_3473: EX28DRAFT_3473 - hypothetical protein, at 141,780 to 141,932 _3473 Position (kb) 140 141 142Strain fitness (log2 ratio) -2 -1 0 1 2 3at 139.960 kb on + strandat 139.960 kb on + strandat 139.961 kb on - strandat 139.961 kb on - strandat 139.977 kb on - strandat 139.985 kb on - strandat 139.990 kb on + strandat 139.991 kb on - strandat 139.991 kb on - strandat 140.020 kb on + strandat 140.038 kb on - strandat 140.059 kb on + strandat 140.095 kb on + strandat 140.095 kb on + strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.149 kb on - strandat 140.153 kb on + strandat 140.172 kb on + strandat 140.172 kb on + strandat 140.172 kb on + strandat 140.172 kb on + strandat 140.172 kb on + strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.176 kb on + strandat 140.176 kb on + strandat 140.176 kb on + strandat 140.200 kb on + strandat 140.219 kb on + strandat 140.219 kb on + strandat 140.220 kb on - strandat 140.220 kb on - strandat 140.267 kb on + strand, within EX28DRAFT_3469at 140.308 kb on + strand, within EX28DRAFT_3469at 140.312 kb on + strand, within EX28DRAFT_3469at 140.313 kb on - strand, within EX28DRAFT_3469at 140.317 kb on + strand, within EX28DRAFT_3469at 140.317 kb on + strand, within EX28DRAFT_3469at 140.318 kb on - strand, within EX28DRAFT_3469at 140.433 kb on - strand, within EX28DRAFT_3469at 140.433 kb on - strand, within EX28DRAFT_3469at 140.469 kb on - strand, within EX28DRAFT_3469at 140.548 kb on - strand, within EX28DRAFT_3469at 140.567 kb on + strandat 140.568 kb on - strandat 140.631 kb on + strandat 140.632 kb on - strandat 140.632 kb on - strandat 140.634 kb on + strandat 140.635 kb on - strandat 140.638 kb on + strand, within EX28DRAFT_3470at 140.639 kb on - strand, within EX28DRAFT_3470at 140.640 kb on + strand, within EX28DRAFT_3470at 140.640 kb on + strand, within EX28DRAFT_3470at 140.672 kb on - strand, within EX28DRAFT_3470at 140.708 kb on + strand, within EX28DRAFT_3470at 140.726 kb on + strand, within EX28DRAFT_3470at 140.726 kb on + strand, within EX28DRAFT_3470at 140.727 kb on - strand, within EX28DRAFT_3470at 140.727 kb on - strand, within EX28DRAFT_3470at 140.727 kb on - strand, within EX28DRAFT_3470at 140.727 kb on - strand, within EX28DRAFT_3470at 140.727 kb on - strand, within EX28DRAFT_3470at 140.727 kb on - strand, within EX28DRAFT_3470at 140.727 kb on - strand, within EX28DRAFT_3470at 140.745 kb on + strand, within EX28DRAFT_3470at 140.746 kb on - strand, within EX28DRAFT_3470at 140.763 kb on + strand, within EX28DRAFT_3470at 140.779 kb on - strand, within EX28DRAFT_3470at 140.789 kb on + strand, within EX28DRAFT_3470at 140.790 kb on - strand, within EX28DRAFT_3470at 140.790 kb on - strand, within EX28DRAFT_3470at 140.800 kb on - strand, within EX28DRAFT_3470at 140.802 kb on + strand, within EX28DRAFT_3470at 140.802 kb on + strand, within EX28DRAFT_3470at 140.803 kb on - strand, within EX28DRAFT_3470at 140.831 kb on + strand, within EX28DRAFT_3470at 140.831 kb on + strand, within EX28DRAFT_3470at 140.831 kb on + strand, within EX28DRAFT_3470at 140.831 kb on + strand, within EX28DRAFT_3470at 140.832 kb on - strand, within EX28DRAFT_3470at 140.832 kb on - strand, within EX28DRAFT_3470at 140.836 kb on + strand, within EX28DRAFT_3470at 140.885 kb on + strandat 140.903 kb on - strandat 140.954 kb on + strand, within EX28DRAFT_3471at 140.986 kb on + strand, within EX28DRAFT_3471at 140.987 kb on - strand, within EX28DRAFT_3471at 140.987 kb on - strand, within EX28DRAFT_3471at 140.998 kb on + strand, within EX28DRAFT_3471at 140.999 kb on - strand, within EX28DRAFT_3471at 141.005 kb on + strand, within EX28DRAFT_3471at 141.069 kb on + strand, within EX28DRAFT_3471at 141.069 kb on + strand, within EX28DRAFT_3471at 141.069 kb on + strand, within EX28DRAFT_3471at 141.069 kb on + strand, within EX28DRAFT_3471at 141.070 kb on - strand, within EX28DRAFT_3471at 141.070 kb on - strand, within EX28DRAFT_3471at 141.090 kb on + strand, within EX28DRAFT_3471at 141.121 kb on + strandat 141.122 kb on - strandat 141.122 kb on - strandat 141.133 kb on - strandat 141.141 kb on - strandat 141.142 kb on + strandat 141.143 kb on - strandat 141.143 kb on - strandat 141.143 kb on - strandat 141.184 kb on + strandat 141.529 kb on + strand, within EX28DRAFT_3472at 141.530 kb on - strand, within EX28DRAFT_3472at 141.530 kb on - strand, within EX28DRAFT_3472at 141.610 kb on - strand, within EX28DRAFT_3472at 141.619 kb on + strand, within EX28DRAFT_3472at 141.620 kb on - strand, within EX28DRAFT_3472at 141.620 kb on - strand, within EX28DRAFT_3472at 141.623 kb on - strand, within EX28DRAFT_3472at 141.633 kb on + strand, within EX28DRAFT_3472at 141.634 kb on - strand, within EX28DRAFT_3472at 142.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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139,960 + -0.1
139,960 + +1.5
139,961 - +0.1
139,961 - +0.6
139,977 - -0.1
139,985 - -0.2
139,990 + +0.1
139,991 - +0.4
139,991 - +0.4
140,020 + +0.7
140,038 - +0.1
140,059 + -0.1
140,095 + +0.3
140,095 + +0.0
140,129 - +0.2
140,129 - +0.2
140,149 - +0.0
140,153 + +2.0
140,172 + +1.1
140,172 + +0.1
140,172 + -0.7
140,172 + -0.0
140,172 + -0.4
140,173 - +0.0
140,173 - -0.0
140,173 - +0.4
140,173 - -0.7
140,173 - +0.9
140,173 - +0.1
140,176 + -0.1
140,176 + -2.1
140,176 + +0.1
140,200 + -0.4
140,219 + +0.2
140,219 + +0.9
140,220 - -0.6
140,220 - +0.1
140,267 + EX28DRAFT_3469 0.19 +0.2
140,308 + EX28DRAFT_3469 0.29 -0.5
140,312 + EX28DRAFT_3469 0.30 -0.4
140,313 - EX28DRAFT_3469 0.31 -0.5
140,317 + EX28DRAFT_3469 0.32 +0.1
140,317 + EX28DRAFT_3469 0.32 +0.5
140,318 - EX28DRAFT_3469 0.32 +0.2
140,433 - EX28DRAFT_3469 0.60 +0.0
140,433 - EX28DRAFT_3469 0.60 -0.8
140,469 - EX28DRAFT_3469 0.69 +3.1
140,548 - EX28DRAFT_3469 0.88 -0.1
140,567 + +0.1
140,568 - +2.8
140,631 + +0.0
140,632 - +0.2
140,632 - -0.7
140,634 + +0.5
140,635 - +0.9
140,638 + EX28DRAFT_3470 0.10 +1.4
140,639 - EX28DRAFT_3470 0.11 +2.3
140,640 + EX28DRAFT_3470 0.11 +0.4
140,640 + EX28DRAFT_3470 0.11 -0.5
140,672 - EX28DRAFT_3470 0.22 -0.1
140,708 + EX28DRAFT_3470 0.34 -0.5
140,726 + EX28DRAFT_3470 0.41 -0.6
140,726 + EX28DRAFT_3470 0.41 +1.1
140,727 - EX28DRAFT_3470 0.41 +1.1
140,727 - EX28DRAFT_3470 0.41 +0.4
140,727 - EX28DRAFT_3470 0.41 -0.5
140,727 - EX28DRAFT_3470 0.41 -0.6
140,727 - EX28DRAFT_3470 0.41 -0.1
140,727 - EX28DRAFT_3470 0.41 +0.0
140,727 - EX28DRAFT_3470 0.41 +0.1
140,745 + EX28DRAFT_3470 0.47 +2.5
140,746 - EX28DRAFT_3470 0.47 +0.8
140,763 + EX28DRAFT_3470 0.53 -0.2
140,779 - EX28DRAFT_3470 0.59 +1.8
140,789 + EX28DRAFT_3470 0.62 -0.0
140,790 - EX28DRAFT_3470 0.63 -0.3
140,790 - EX28DRAFT_3470 0.63 -0.5
140,800 - EX28DRAFT_3470 0.66 +2.3
140,802 + EX28DRAFT_3470 0.67 +0.4
140,802 + EX28DRAFT_3470 0.67 -0.2
140,803 - EX28DRAFT_3470 0.67 -1.8
140,831 + EX28DRAFT_3470 0.77 +0.7
140,831 + EX28DRAFT_3470 0.77 +0.2
140,831 + EX28DRAFT_3470 0.77 +0.3
140,831 + EX28DRAFT_3470 0.77 +0.4
140,832 - EX28DRAFT_3470 0.77 +0.4
140,832 - EX28DRAFT_3470 0.77 -0.8
140,836 + EX28DRAFT_3470 0.78 -0.6
140,885 + +0.2
140,903 - +0.9
140,954 + EX28DRAFT_3471 0.15 +0.3
140,986 + EX28DRAFT_3471 0.31 +0.2
140,987 - EX28DRAFT_3471 0.31 -0.9
140,987 - EX28DRAFT_3471 0.31 +0.4
140,998 + EX28DRAFT_3471 0.37 -0.0
140,999 - EX28DRAFT_3471 0.37 -0.3
141,005 + EX28DRAFT_3471 0.40 -0.4
141,069 + EX28DRAFT_3471 0.71 -0.8
141,069 + EX28DRAFT_3471 0.71 -0.1
141,069 + EX28DRAFT_3471 0.71 -1.5
141,069 + EX28DRAFT_3471 0.71 -0.2
141,070 - EX28DRAFT_3471 0.71 +0.1
141,070 - EX28DRAFT_3471 0.71 -0.3
141,090 + EX28DRAFT_3471 0.81 -0.4
141,121 + -0.6
141,122 - -0.1
141,122 - -0.3
141,133 - +1.9
141,141 - +0.2
141,142 + -0.2
141,143 - -0.3
141,143 - -0.2
141,143 - +0.7
141,184 + -1.1
141,529 + EX28DRAFT_3472 0.70 -0.1
141,530 - EX28DRAFT_3472 0.70 -0.2
141,530 - EX28DRAFT_3472 0.70 -0.6
141,610 - EX28DRAFT_3472 0.84 +1.8
141,619 + EX28DRAFT_3472 0.86 -0.3
141,620 - EX28DRAFT_3472 0.86 -2.1
141,620 - EX28DRAFT_3472 0.86 +0.5
141,623 - EX28DRAFT_3472 0.86 -0.6
141,633 + EX28DRAFT_3472 0.88 +1.3
141,634 - EX28DRAFT_3472 0.88 -1.5
142,078 - -0.3

Or see this region's nucleotide sequence