Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3434 and EX28DRAFT_3435 overlap by 11 nucleotides EX28DRAFT_3435 and EX28DRAFT_3436 are separated by 3 nucleotides EX28DRAFT_3436 and EX28DRAFT_3437 are separated by 97 nucleotides EX28DRAFT_3437 and EX28DRAFT_3438 are separated by 376 nucleotides
EX28DRAFT_3434: EX28DRAFT_3434 - addiction module antitoxin, RelB/DinJ family, at 104,477 to 104,719
_3434
EX28DRAFT_3435: EX28DRAFT_3435 - addiction module toxin, RelE/StbE family, at 104,709 to 104,993
_3435
EX28DRAFT_3436: EX28DRAFT_3436 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 104,997 to 105,461
_3436
EX28DRAFT_3437: EX28DRAFT_3437 - ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2), at 105,559 to 107,697
_3437
EX28DRAFT_3438: EX28DRAFT_3438 - alpha,alpha-phosphotrehalase, at 108,074 to 109,717
_3438
Position (kb)
105
106
107
108 Strain fitness (log2 ratio)
-1
0
1 at 104.586 kb on - strand, within EX28DRAFT_3434 at 104.630 kb on - strand, within EX28DRAFT_3434 at 104.696 kb on - strand at 104.696 kb on - strand at 104.701 kb on + strand at 104.715 kb on + strand at 104.716 kb on - strand at 104.773 kb on + strand, within EX28DRAFT_3435 at 104.774 kb on - strand, within EX28DRAFT_3435 at 104.785 kb on + strand, within EX28DRAFT_3435 at 104.786 kb on - strand, within EX28DRAFT_3435 at 104.786 kb on - strand, within EX28DRAFT_3435 at 104.926 kb on + strand, within EX28DRAFT_3435 at 104.946 kb on - strand, within EX28DRAFT_3435 at 104.991 kb on + strand at 104.992 kb on - strand at 104.995 kb on + strand at 105.016 kb on - strand at 105.058 kb on - strand, within EX28DRAFT_3436 at 105.140 kb on + strand, within EX28DRAFT_3436 at 105.140 kb on + strand, within EX28DRAFT_3436 at 105.142 kb on + strand, within EX28DRAFT_3436 at 105.142 kb on + strand, within EX28DRAFT_3436 at 105.143 kb on - strand, within EX28DRAFT_3436 at 105.162 kb on - strand, within EX28DRAFT_3436 at 105.162 kb on - strand, within EX28DRAFT_3436 at 105.162 kb on - strand, within EX28DRAFT_3436 at 105.442 kb on + strand at 105.442 kb on + strand at 105.445 kb on + strand at 105.446 kb on - strand at 105.446 kb on - strand at 105.446 kb on - strand at 105.462 kb on - strand at 105.981 kb on - strand, within EX28DRAFT_3437 at 105.981 kb on - strand, within EX28DRAFT_3437 at 105.981 kb on - strand, within EX28DRAFT_3437 at 105.984 kb on - strand, within EX28DRAFT_3437 at 105.984 kb on - strand, within EX28DRAFT_3437 at 106.074 kb on - strand, within EX28DRAFT_3437 at 106.176 kb on - strand, within EX28DRAFT_3437 at 106.176 kb on - strand, within EX28DRAFT_3437 at 106.176 kb on - strand, within EX28DRAFT_3437 at 106.179 kb on + strand, within EX28DRAFT_3437 at 106.179 kb on + strand, within EX28DRAFT_3437 at 106.179 kb on + strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.180 kb on - strand, within EX28DRAFT_3437 at 106.226 kb on + strand, within EX28DRAFT_3437 at 106.226 kb on + strand, within EX28DRAFT_3437 at 106.315 kb on - strand, within EX28DRAFT_3437 at 106.316 kb on + strand, within EX28DRAFT_3437 at 106.317 kb on - strand, within EX28DRAFT_3437 at 106.317 kb on - strand, within EX28DRAFT_3437 at 106.362 kb on + strand, within EX28DRAFT_3437 at 106.595 kb on + strand, within EX28DRAFT_3437 at 106.596 kb on - strand, within EX28DRAFT_3437 at 106.596 kb on - strand, within EX28DRAFT_3437 at 106.614 kb on - strand, within EX28DRAFT_3437 at 106.658 kb on + strand, within EX28DRAFT_3437 at 106.658 kb on + strand, within EX28DRAFT_3437 at 106.865 kb on - strand, within EX28DRAFT_3437 at 106.895 kb on + strand, within EX28DRAFT_3437 at 107.044 kb on - strand, within EX28DRAFT_3437 at 107.044 kb on - strand, within EX28DRAFT_3437 at 107.044 kb on - strand, within EX28DRAFT_3437 at 107.133 kb on + strand, within EX28DRAFT_3437 at 107.134 kb on - strand, within EX28DRAFT_3437 at 107.279 kb on + strand, within EX28DRAFT_3437 at 107.280 kb on - strand, within EX28DRAFT_3437 at 107.456 kb on + strand, within EX28DRAFT_3437 at 107.456 kb on + strand, within EX28DRAFT_3437 at 107.457 kb on - strand, within EX28DRAFT_3437 at 107.478 kb on - strand, within EX28DRAFT_3437 at 107.744 kb on + strand at 107.745 kb on - strand at 107.745 kb on - strand at 107.757 kb on + strand at 107.758 kb on - strand at 107.758 kb on - strand at 107.822 kb on + strand at 107.823 kb on - strand at 107.856 kb on - strand at 107.860 kb on - strand at 107.893 kb on + strand at 107.897 kb on + strand at 107.898 kb on - strand at 107.898 kb on - strand at 107.898 kb on - strand at 107.898 kb on - strand at 107.948 kb on + strand at 107.963 kb on - strand at 108.160 kb on + strand at 108.348 kb on + strand, within EX28DRAFT_3438 at 108.349 kb on - strand, within EX28DRAFT_3438 at 108.349 kb on - strand, within EX28DRAFT_3438 at 108.399 kb on + strand, within EX28DRAFT_3438 at 108.400 kb on - strand, within EX28DRAFT_3438 at 108.400 kb on - strand, within EX28DRAFT_3438 at 108.640 kb on + strand, within EX28DRAFT_3438 at 108.643 kb on - strand, within EX28DRAFT_3438
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 104,586 - EX28DRAFT_3434 0.45 -0.5 104,630 - EX28DRAFT_3434 0.63 -0.2 104,696 - +0.2 104,696 - +0.3 104,701 + +0.6 104,715 + -0.7 104,716 - -0.0 104,773 + EX28DRAFT_3435 0.22 +1.1 104,774 - EX28DRAFT_3435 0.23 -0.6 104,785 + EX28DRAFT_3435 0.27 +0.1 104,786 - EX28DRAFT_3435 0.27 -0.6 104,786 - EX28DRAFT_3435 0.27 +0.4 104,926 + EX28DRAFT_3435 0.76 -0.0 104,946 - EX28DRAFT_3435 0.83 +0.5 104,991 + +0.6 104,992 - -0.1 104,995 + -0.2 105,016 - +0.2 105,058 - EX28DRAFT_3436 0.13 -0.0 105,140 + EX28DRAFT_3436 0.31 -1.6 105,140 + EX28DRAFT_3436 0.31 -0.0 105,142 + EX28DRAFT_3436 0.31 +0.4 105,142 + EX28DRAFT_3436 0.31 -0.3 105,143 - EX28DRAFT_3436 0.31 -0.2 105,162 - EX28DRAFT_3436 0.35 +0.1 105,162 - EX28DRAFT_3436 0.35 +1.0 105,162 - EX28DRAFT_3436 0.35 +0.3 105,442 + -0.7 105,442 + -0.2 105,445 + +0.3 105,446 - -0.4 105,446 - +0.6 105,446 - +0.9 105,462 - -0.1 105,981 - EX28DRAFT_3437 0.20 -0.5 105,981 - EX28DRAFT_3437 0.20 +1.3 105,981 - EX28DRAFT_3437 0.20 +0.3 105,984 - EX28DRAFT_3437 0.20 +0.4 105,984 - EX28DRAFT_3437 0.20 -1.0 106,074 - EX28DRAFT_3437 0.24 +1.0 106,176 - EX28DRAFT_3437 0.29 +0.7 106,176 - EX28DRAFT_3437 0.29 +0.8 106,176 - EX28DRAFT_3437 0.29 -0.3 106,179 + EX28DRAFT_3437 0.29 +1.7 106,179 + EX28DRAFT_3437 0.29 +0.2 106,179 + EX28DRAFT_3437 0.29 +0.6 106,180 - EX28DRAFT_3437 0.29 +0.3 106,180 - EX28DRAFT_3437 0.29 -0.1 106,180 - EX28DRAFT_3437 0.29 +0.6 106,180 - EX28DRAFT_3437 0.29 +0.3 106,180 - EX28DRAFT_3437 0.29 -0.5 106,226 + EX28DRAFT_3437 0.31 +0.9 106,226 + EX28DRAFT_3437 0.31 -0.0 106,315 - EX28DRAFT_3437 0.35 -0.6 106,316 + EX28DRAFT_3437 0.35 +0.3 106,317 - EX28DRAFT_3437 0.35 -0.1 106,317 - EX28DRAFT_3437 0.35 -0.3 106,362 + EX28DRAFT_3437 0.38 +1.0 106,595 + EX28DRAFT_3437 0.48 +0.1 106,596 - EX28DRAFT_3437 0.48 +0.3 106,596 - EX28DRAFT_3437 0.48 -0.0 106,614 - EX28DRAFT_3437 0.49 -0.9 106,658 + EX28DRAFT_3437 0.51 +0.4 106,658 + EX28DRAFT_3437 0.51 +1.1 106,865 - EX28DRAFT_3437 0.61 -0.0 106,895 + EX28DRAFT_3437 0.62 +0.3 107,044 - EX28DRAFT_3437 0.69 +0.1 107,044 - EX28DRAFT_3437 0.69 -0.1 107,044 - EX28DRAFT_3437 0.69 +1.0 107,133 + EX28DRAFT_3437 0.74 -0.8 107,134 - EX28DRAFT_3437 0.74 +0.1 107,279 + EX28DRAFT_3437 0.80 -0.1 107,280 - EX28DRAFT_3437 0.80 +0.5 107,456 + EX28DRAFT_3437 0.89 +1.0 107,456 + EX28DRAFT_3437 0.89 +0.7 107,457 - EX28DRAFT_3437 0.89 +1.4 107,478 - EX28DRAFT_3437 0.90 +1.7 107,744 + +0.6 107,745 - +0.5 107,745 - -1.7 107,757 + +0.2 107,758 - -0.0 107,758 - -0.3 107,822 + -0.6 107,823 - -0.0 107,856 - +0.0 107,860 - -0.3 107,893 + -0.7 107,897 + +0.2 107,898 - +0.0 107,898 - +0.3 107,898 - -0.3 107,898 - -0.3 107,948 + -0.4 107,963 - -0.3 108,160 + -1.4 108,348 + EX28DRAFT_3438 0.17 +0.5 108,349 - EX28DRAFT_3438 0.17 +0.1 108,349 - EX28DRAFT_3438 0.17 +0.0 108,399 + EX28DRAFT_3438 0.20 -0.9 108,400 - EX28DRAFT_3438 0.20 +0.9 108,400 - EX28DRAFT_3438 0.20 -1.1 108,640 + EX28DRAFT_3438 0.34 +0.2 108,643 - EX28DRAFT_3438 0.35 -0.2
Or see this region's nucleotide sequence