Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3335

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3333 and EX28DRAFT_3334 overlap by 25 nucleotidesEX28DRAFT_3334 and EX28DRAFT_3335 are separated by 113 nucleotidesEX28DRAFT_3335 and EX28DRAFT_3336 are separated by 115 nucleotides EX28DRAFT_3333: EX28DRAFT_3333 - Thiol:disulfide interchange protein, at 2,937 to 4,652 _3333 EX28DRAFT_3334: EX28DRAFT_3334 - Uncharacterized protein involved in tolerance to divalent cations, at 4,628 to 4,951 _3334 EX28DRAFT_3335: EX28DRAFT_3335 - anaerobic c4-dicarboxylate membrane transporter family protein, at 5,065 to 6,366 _3335 EX28DRAFT_3336: EX28DRAFT_3336 - aspartate ammonia-lyase, at 6,482 to 7,918 _3336 Position (kb) 5 6 7Strain fitness (log2 ratio) -1 0 1 2at 4.073 kb on - strand, within EX28DRAFT_3333at 4.215 kb on - strand, within EX28DRAFT_3333at 4.354 kb on - strand, within EX28DRAFT_3333at 4.354 kb on - strand, within EX28DRAFT_3333at 4.477 kb on + strand, within EX28DRAFT_3333at 4.477 kb on + strand, within EX28DRAFT_3333at 4.477 kb on + strand, within EX28DRAFT_3333at 4.478 kb on - strand, within EX28DRAFT_3333at 4.478 kb on - strand, within EX28DRAFT_3333at 4.478 kb on - strand, within EX28DRAFT_3333at 4.478 kb on - strand, within EX28DRAFT_3333at 4.478 kb on - strand, within EX28DRAFT_3333at 4.478 kb on - strand, within EX28DRAFT_3333at 4.478 kb on - strand, within EX28DRAFT_3333at 4.481 kb on - strandat 4.502 kb on + strandat 4.660 kb on - strandat 4.818 kb on + strand, within EX28DRAFT_3334at 4.818 kb on + strand, within EX28DRAFT_3334at 4.983 kb on + strandat 4.983 kb on + strandat 4.983 kb on + strandat 4.983 kb on + strandat 4.983 kb on + strandat 4.984 kb on - strandat 4.984 kb on - strandat 4.984 kb on - strandat 4.984 kb on - strandat 4.986 kb on - strandat 5.039 kb on + strandat 5.040 kb on - strandat 5.043 kb on + strandat 5.066 kb on + strandat 5.156 kb on + strandat 5.157 kb on - strandat 5.157 kb on - strandat 5.381 kb on + strand, within EX28DRAFT_3335at 5.442 kb on + strand, within EX28DRAFT_3335at 5.442 kb on + strand, within EX28DRAFT_3335at 5.649 kb on - strand, within EX28DRAFT_3335at 5.873 kb on + strand, within EX28DRAFT_3335at 5.874 kb on - strand, within EX28DRAFT_3335at 6.103 kb on - strand, within EX28DRAFT_3335at 6.107 kb on + strand, within EX28DRAFT_3335at 6.107 kb on + strand, within EX28DRAFT_3335at 6.130 kb on - strand, within EX28DRAFT_3335at 6.153 kb on - strand, within EX28DRAFT_3335at 6.195 kb on + strand, within EX28DRAFT_3335at 6.195 kb on + strand, within EX28DRAFT_3335at 6.255 kb on + strandat 6.262 kb on - strandat 6.386 kb on + strandat 6.462 kb on - strandat 6.502 kb on + strandat 6.503 kb on - strandat 6.504 kb on + strandat 6.518 kb on - strandat 6.518 kb on - strandat 6.519 kb on + strandat 6.519 kb on + strandat 6.520 kb on - strandat 6.520 kb on - strandat 6.553 kb on + strandat 6.605 kb on + strandat 6.678 kb on + strand, within EX28DRAFT_3336at 6.700 kb on + strand, within EX28DRAFT_3336at 6.702 kb on + strand, within EX28DRAFT_3336at 6.703 kb on - strand, within EX28DRAFT_3336at 6.703 kb on - strand, within EX28DRAFT_3336at 6.708 kb on + strand, within EX28DRAFT_3336at 6.708 kb on + strand, within EX28DRAFT_3336at 6.709 kb on - strand, within EX28DRAFT_3336at 6.709 kb on - strand, within EX28DRAFT_3336at 6.709 kb on - strand, within EX28DRAFT_3336at 6.878 kb on - strand, within EX28DRAFT_3336at 6.878 kb on - strand, within EX28DRAFT_3336at 7.079 kb on + strand, within EX28DRAFT_3336at 7.292 kb on + strand, within EX28DRAFT_3336at 7.292 kb on + strand, within EX28DRAFT_3336at 7.293 kb on - strand, within EX28DRAFT_3336at 7.293 kb on - strand, within EX28DRAFT_3336

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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4,073 - EX28DRAFT_3333 0.66 -0.1
4,215 - EX28DRAFT_3333 0.74 -0.2
4,354 - EX28DRAFT_3333 0.83 -0.4
4,354 - EX28DRAFT_3333 0.83 -0.1
4,477 + EX28DRAFT_3333 0.90 -0.3
4,477 + EX28DRAFT_3333 0.90 +0.5
4,477 + EX28DRAFT_3333 0.90 -0.3
4,478 - EX28DRAFT_3333 0.90 +0.1
4,478 - EX28DRAFT_3333 0.90 +0.1
4,478 - EX28DRAFT_3333 0.90 +1.8
4,478 - EX28DRAFT_3333 0.90 -0.6
4,478 - EX28DRAFT_3333 0.90 +0.2
4,478 - EX28DRAFT_3333 0.90 -0.5
4,478 - EX28DRAFT_3333 0.90 -0.0
4,481 - -0.3
4,502 + +0.1
4,660 - -0.6
4,818 + EX28DRAFT_3334 0.59 -0.1
4,818 + EX28DRAFT_3334 0.59 +0.1
4,983 + -0.5
4,983 + +0.5
4,983 + +0.9
4,983 + +0.7
4,983 + +0.0
4,984 - +1.1
4,984 - +1.3
4,984 - -1.0
4,984 - +0.2
4,986 - +0.5
5,039 + -0.9
5,040 - -0.2
5,043 + -0.2
5,066 + -0.0
5,156 + -0.4
5,157 - +2.0
5,157 - +0.1
5,381 + EX28DRAFT_3335 0.24 +0.0
5,442 + EX28DRAFT_3335 0.29 -0.1
5,442 + EX28DRAFT_3335 0.29 +0.6
5,649 - EX28DRAFT_3335 0.45 +0.3
5,873 + EX28DRAFT_3335 0.62 +0.1
5,874 - EX28DRAFT_3335 0.62 -0.5
6,103 - EX28DRAFT_3335 0.80 +0.1
6,107 + EX28DRAFT_3335 0.80 -0.2
6,107 + EX28DRAFT_3335 0.80 +0.4
6,130 - EX28DRAFT_3335 0.82 -0.5
6,153 - EX28DRAFT_3335 0.84 +0.8
6,195 + EX28DRAFT_3335 0.87 -0.4
6,195 + EX28DRAFT_3335 0.87 +0.5
6,255 + +0.0
6,262 - +0.3
6,386 + -0.2
6,462 - -0.5
6,502 + -0.3
6,503 - -0.3
6,504 + -1.5
6,518 - +0.0
6,518 - -0.4
6,519 + -0.5
6,519 + -0.2
6,520 - -0.0
6,520 - +0.1
6,553 + +0.6
6,605 + +0.5
6,678 + EX28DRAFT_3336 0.14 -0.4
6,700 + EX28DRAFT_3336 0.15 -0.1
6,702 + EX28DRAFT_3336 0.15 +0.6
6,703 - EX28DRAFT_3336 0.15 -0.0
6,703 - EX28DRAFT_3336 0.15 -0.0
6,708 + EX28DRAFT_3336 0.16 -1.2
6,708 + EX28DRAFT_3336 0.16 +0.2
6,709 - EX28DRAFT_3336 0.16 -0.2
6,709 - EX28DRAFT_3336 0.16 +0.4
6,709 - EX28DRAFT_3336 0.16 +0.2
6,878 - EX28DRAFT_3336 0.28 -0.4
6,878 - EX28DRAFT_3336 0.28 +0.2
7,079 + EX28DRAFT_3336 0.42 +0.2
7,292 + EX28DRAFT_3336 0.56 -0.1
7,292 + EX28DRAFT_3336 0.56 -0.0
7,293 - EX28DRAFT_3336 0.56 -1.1
7,293 - EX28DRAFT_3336 0.56 -0.0

Or see this region's nucleotide sequence