Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3322

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3321 and EX28DRAFT_3322 are separated by 67 nucleotidesEX28DRAFT_3322 and EX28DRAFT_3323 are separated by 9 nucleotides EX28DRAFT_3321: EX28DRAFT_3321 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 623,484 to 624,509 _3321 EX28DRAFT_3322: EX28DRAFT_3322 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 624,577 to 625,758 _3322 EX28DRAFT_3323: EX28DRAFT_3323 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 625,768 to 626,871 _3323 Position (kb) 624 625 626Strain fitness (log2 ratio) -1 0 1at 623.632 kb on - strand, within EX28DRAFT_3321at 623.720 kb on - strand, within EX28DRAFT_3321at 623.720 kb on - strand, within EX28DRAFT_3321at 623.724 kb on + strand, within EX28DRAFT_3321at 623.725 kb on - strand, within EX28DRAFT_3321at 623.725 kb on - strand, within EX28DRAFT_3321at 623.854 kb on - strand, within EX28DRAFT_3321at 623.854 kb on - strand, within EX28DRAFT_3321at 623.854 kb on - strand, within EX28DRAFT_3321at 623.857 kb on - strand, within EX28DRAFT_3321at 623.867 kb on - strand, within EX28DRAFT_3321at 623.934 kb on - strand, within EX28DRAFT_3321at 623.974 kb on - strand, within EX28DRAFT_3321at 623.997 kb on + strand, within EX28DRAFT_3321at 623.997 kb on + strand, within EX28DRAFT_3321at 623.998 kb on - strand, within EX28DRAFT_3321at 623.998 kb on - strand, within EX28DRAFT_3321at 624.090 kb on + strand, within EX28DRAFT_3321at 624.090 kb on + strand, within EX28DRAFT_3321at 624.104 kb on + strand, within EX28DRAFT_3321at 624.104 kb on + strand, within EX28DRAFT_3321at 624.105 kb on - strand, within EX28DRAFT_3321at 624.369 kb on + strand, within EX28DRAFT_3321at 624.396 kb on + strand, within EX28DRAFT_3321at 624.397 kb on - strand, within EX28DRAFT_3321at 624.503 kb on - strandat 624.507 kb on + strandat 624.514 kb on + strandat 624.514 kb on + strandat 624.514 kb on + strandat 624.576 kb on + strandat 624.654 kb on + strandat 624.654 kb on + strandat 624.660 kb on + strandat 624.661 kb on - strandat 624.674 kb on + strandat 624.674 kb on + strandat 624.675 kb on - strandat 624.688 kb on + strandat 624.732 kb on + strand, within EX28DRAFT_3322at 624.831 kb on - strand, within EX28DRAFT_3322at 624.831 kb on - strand, within EX28DRAFT_3322at 624.847 kb on - strand, within EX28DRAFT_3322at 624.847 kb on - strand, within EX28DRAFT_3322at 624.870 kb on + strand, within EX28DRAFT_3322at 624.887 kb on + strand, within EX28DRAFT_3322at 624.955 kb on + strand, within EX28DRAFT_3322at 624.958 kb on - strand, within EX28DRAFT_3322at 624.958 kb on - strand, within EX28DRAFT_3322at 625.078 kb on - strand, within EX28DRAFT_3322at 625.123 kb on + strand, within EX28DRAFT_3322at 625.132 kb on - strand, within EX28DRAFT_3322at 625.182 kb on + strand, within EX28DRAFT_3322at 625.218 kb on + strand, within EX28DRAFT_3322at 625.219 kb on - strand, within EX28DRAFT_3322at 625.344 kb on - strand, within EX28DRAFT_3322at 625.346 kb on + strand, within EX28DRAFT_3322at 625.346 kb on + strand, within EX28DRAFT_3322at 625.346 kb on + strand, within EX28DRAFT_3322at 625.347 kb on - strand, within EX28DRAFT_3322at 625.387 kb on + strand, within EX28DRAFT_3322at 625.387 kb on + strand, within EX28DRAFT_3322at 625.390 kb on - strand, within EX28DRAFT_3322at 625.390 kb on - strand, within EX28DRAFT_3322at 625.684 kb on + strandat 625.684 kb on + strandat 625.685 kb on - strandat 625.726 kb on + strandat 625.727 kb on - strandat 625.729 kb on - strandat 625.729 kb on - strandat 625.739 kb on + strandat 625.764 kb on + strandat 625.764 kb on + strandat 625.765 kb on - strandat 625.781 kb on + strandat 625.866 kb on + strandat 625.927 kb on - strand, within EX28DRAFT_3323at 626.032 kb on + strand, within EX28DRAFT_3323at 626.033 kb on - strand, within EX28DRAFT_3323at 626.033 kb on - strand, within EX28DRAFT_3323at 626.033 kb on - strand, within EX28DRAFT_3323at 626.041 kb on + strand, within EX28DRAFT_3323at 626.140 kb on + strand, within EX28DRAFT_3323at 626.140 kb on + strand, within EX28DRAFT_3323at 626.140 kb on + strand, within EX28DRAFT_3323at 626.141 kb on - strand, within EX28DRAFT_3323at 626.141 kb on - strand, within EX28DRAFT_3323at 626.143 kb on - strand, within EX28DRAFT_3323at 626.191 kb on + strand, within EX28DRAFT_3323at 626.192 kb on - strand, within EX28DRAFT_3323at 626.192 kb on - strand, within EX28DRAFT_3323at 626.403 kb on + strand, within EX28DRAFT_3323at 626.403 kb on + strand, within EX28DRAFT_3323at 626.404 kb on - strand, within EX28DRAFT_3323at 626.500 kb on + strand, within EX28DRAFT_3323at 626.500 kb on + strand, within EX28DRAFT_3323at 626.501 kb on - strand, within EX28DRAFT_3323at 626.516 kb on + strand, within EX28DRAFT_3323at 626.516 kb on + strand, within EX28DRAFT_3323at 626.517 kb on - strand, within EX28DRAFT_3323at 626.712 kb on + strand, within EX28DRAFT_3323

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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623,632 - EX28DRAFT_3321 0.14 -0.8
623,720 - EX28DRAFT_3321 0.23 +0.6
623,720 - EX28DRAFT_3321 0.23 -0.3
623,724 + EX28DRAFT_3321 0.23 -0.1
623,725 - EX28DRAFT_3321 0.23 +0.0
623,725 - EX28DRAFT_3321 0.23 -0.7
623,854 - EX28DRAFT_3321 0.36 +1.5
623,854 - EX28DRAFT_3321 0.36 +0.3
623,854 - EX28DRAFT_3321 0.36 +0.0
623,857 - EX28DRAFT_3321 0.36 +0.5
623,867 - EX28DRAFT_3321 0.37 -0.9
623,934 - EX28DRAFT_3321 0.44 +0.2
623,974 - EX28DRAFT_3321 0.48 +0.9
623,997 + EX28DRAFT_3321 0.50 +1.5
623,997 + EX28DRAFT_3321 0.50 +0.2
623,998 - EX28DRAFT_3321 0.50 +0.7
623,998 - EX28DRAFT_3321 0.50 -0.0
624,090 + EX28DRAFT_3321 0.59 +0.1
624,090 + EX28DRAFT_3321 0.59 +0.6
624,104 + EX28DRAFT_3321 0.60 -0.2
624,104 + EX28DRAFT_3321 0.60 -0.7
624,105 - EX28DRAFT_3321 0.61 -0.3
624,369 + EX28DRAFT_3321 0.86 +0.5
624,396 + EX28DRAFT_3321 0.89 -0.1
624,397 - EX28DRAFT_3321 0.89 +0.4
624,503 - +0.3
624,507 + +0.2
624,514 + +0.2
624,514 + +0.3
624,514 + +0.1
624,576 + +0.3
624,654 + -0.5
624,654 + -1.2
624,660 + +0.5
624,661 - +0.1
624,674 + +0.0
624,674 + +0.2
624,675 - +1.3
624,688 + -0.0
624,732 + EX28DRAFT_3322 0.13 +0.0
624,831 - EX28DRAFT_3322 0.21 +0.3
624,831 - EX28DRAFT_3322 0.21 -0.2
624,847 - EX28DRAFT_3322 0.23 +0.8
624,847 - EX28DRAFT_3322 0.23 +1.7
624,870 + EX28DRAFT_3322 0.25 -0.8
624,887 + EX28DRAFT_3322 0.26 +0.3
624,955 + EX28DRAFT_3322 0.32 -0.2
624,958 - EX28DRAFT_3322 0.32 -0.4
624,958 - EX28DRAFT_3322 0.32 +0.4
625,078 - EX28DRAFT_3322 0.42 +0.3
625,123 + EX28DRAFT_3322 0.46 -1.1
625,132 - EX28DRAFT_3322 0.47 +0.2
625,182 + EX28DRAFT_3322 0.51 +0.8
625,218 + EX28DRAFT_3322 0.54 -0.1
625,219 - EX28DRAFT_3322 0.54 +0.3
625,344 - EX28DRAFT_3322 0.65 +0.2
625,346 + EX28DRAFT_3322 0.65 -0.2
625,346 + EX28DRAFT_3322 0.65 +1.5
625,346 + EX28DRAFT_3322 0.65 +0.1
625,347 - EX28DRAFT_3322 0.65 +0.5
625,387 + EX28DRAFT_3322 0.69 -0.2
625,387 + EX28DRAFT_3322 0.69 +0.0
625,390 - EX28DRAFT_3322 0.69 +0.2
625,390 - EX28DRAFT_3322 0.69 +0.5
625,684 + +0.4
625,684 + -1.5
625,685 - +0.8
625,726 + +0.5
625,727 - -0.1
625,729 - -0.7
625,729 - +0.7
625,739 + -0.1
625,764 + -0.1
625,764 + -0.6
625,765 - -0.9
625,781 + -0.1
625,866 + +0.1
625,927 - EX28DRAFT_3323 0.14 -0.2
626,032 + EX28DRAFT_3323 0.24 +0.8
626,033 - EX28DRAFT_3323 0.24 +0.3
626,033 - EX28DRAFT_3323 0.24 -1.3
626,033 - EX28DRAFT_3323 0.24 +0.4
626,041 + EX28DRAFT_3323 0.25 -0.3
626,140 + EX28DRAFT_3323 0.34 -0.2
626,140 + EX28DRAFT_3323 0.34 -1.7
626,140 + EX28DRAFT_3323 0.34 +0.5
626,141 - EX28DRAFT_3323 0.34 +0.2
626,141 - EX28DRAFT_3323 0.34 -0.5
626,143 - EX28DRAFT_3323 0.34 +0.1
626,191 + EX28DRAFT_3323 0.38 +0.5
626,192 - EX28DRAFT_3323 0.38 -0.8
626,192 - EX28DRAFT_3323 0.38 +0.5
626,403 + EX28DRAFT_3323 0.58 -0.5
626,403 + EX28DRAFT_3323 0.58 +0.5
626,404 - EX28DRAFT_3323 0.58 -0.1
626,500 + EX28DRAFT_3323 0.66 +0.2
626,500 + EX28DRAFT_3323 0.66 +0.1
626,501 - EX28DRAFT_3323 0.66 +0.0
626,516 + EX28DRAFT_3323 0.68 +0.5
626,516 + EX28DRAFT_3323 0.68 -0.5
626,517 - EX28DRAFT_3323 0.68 +0.1
626,712 + EX28DRAFT_3323 0.86 +0.1

Or see this region's nucleotide sequence