Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3318 and EX28DRAFT_3319 are separated by 11 nucleotides EX28DRAFT_3319 and EX28DRAFT_3320 are separated by 303 nucleotides EX28DRAFT_3320 and EX28DRAFT_3321 are separated by 473 nucleotides
EX28DRAFT_3318: EX28DRAFT_3318 - RND family efflux transporter, MFP subunit, at 618,221 to 619,360
_3318
EX28DRAFT_3319: EX28DRAFT_3319 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 619,372 to 622,485
_3319
EX28DRAFT_3320: EX28DRAFT_3320 - hypothetical protein, at 622,789 to 623,010
_3320
EX28DRAFT_3321: EX28DRAFT_3321 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 623,484 to 624,509
_3321
Position (kb) 619
620
621
622
623 Strain fitness (log2 ratio) -2
-1
0
1 at 618.474 kb on + strand, within EX28DRAFT_3318 at 618.475 kb on - strand, within EX28DRAFT_3318 at 618.495 kb on - strand, within EX28DRAFT_3318 at 618.515 kb on + strand, within EX28DRAFT_3318 at 618.516 kb on - strand, within EX28DRAFT_3318 at 618.527 kb on + strand, within EX28DRAFT_3318 at 618.624 kb on - strand, within EX28DRAFT_3318 at 618.624 kb on - strand, within EX28DRAFT_3318 at 618.641 kb on + strand, within EX28DRAFT_3318 at 618.641 kb on + strand, within EX28DRAFT_3318 at 618.718 kb on + strand, within EX28DRAFT_3318 at 618.719 kb on - strand, within EX28DRAFT_3318 at 618.719 kb on - strand, within EX28DRAFT_3318 at 618.719 kb on - strand, within EX28DRAFT_3318 at 618.852 kb on - strand, within EX28DRAFT_3318 at 619.187 kb on - strand, within EX28DRAFT_3318 at 619.413 kb on - strand at 619.549 kb on - strand at 619.600 kb on + strand at 619.600 kb on + strand at 619.600 kb on + strand at 619.600 kb on + strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.603 kb on - strand at 619.603 kb on - strand at 619.603 kb on - strand at 619.603 kb on - strand at 619.603 kb on - strand at 619.841 kb on - strand, within EX28DRAFT_3319 at 619.841 kb on - strand, within EX28DRAFT_3319 at 620.245 kb on - strand, within EX28DRAFT_3319 at 620.289 kb on + strand, within EX28DRAFT_3319 at 620.290 kb on - strand, within EX28DRAFT_3319 at 620.339 kb on + strand, within EX28DRAFT_3319 at 620.340 kb on - strand, within EX28DRAFT_3319 at 620.344 kb on + strand, within EX28DRAFT_3319 at 620.345 kb on - strand, within EX28DRAFT_3319 at 620.437 kb on + strand, within EX28DRAFT_3319 at 620.437 kb on + strand, within EX28DRAFT_3319 at 620.544 kb on + strand, within EX28DRAFT_3319 at 620.544 kb on + strand, within EX28DRAFT_3319 at 620.545 kb on - strand, within EX28DRAFT_3319 at 620.545 kb on - strand, within EX28DRAFT_3319 at 620.577 kb on - strand, within EX28DRAFT_3319 at 620.892 kb on + strand, within EX28DRAFT_3319 at 620.917 kb on - strand, within EX28DRAFT_3319 at 620.947 kb on + strand, within EX28DRAFT_3319 at 620.947 kb on + strand, within EX28DRAFT_3319 at 620.947 kb on + strand, within EX28DRAFT_3319 at 620.947 kb on + strand, within EX28DRAFT_3319 at 620.948 kb on - strand, within EX28DRAFT_3319 at 620.968 kb on - strand, within EX28DRAFT_3319 at 621.001 kb on + strand, within EX28DRAFT_3319 at 621.001 kb on + strand, within EX28DRAFT_3319 at 621.002 kb on - strand, within EX28DRAFT_3319 at 621.080 kb on + strand, within EX28DRAFT_3319 at 621.081 kb on - strand, within EX28DRAFT_3319 at 621.085 kb on - strand, within EX28DRAFT_3319 at 621.085 kb on - strand, within EX28DRAFT_3319 at 621.085 kb on - strand, within EX28DRAFT_3319 at 621.213 kb on + strand, within EX28DRAFT_3319 at 621.213 kb on + strand, within EX28DRAFT_3319 at 621.214 kb on - strand, within EX28DRAFT_3319 at 621.538 kb on - strand, within EX28DRAFT_3319 at 621.641 kb on - strand, within EX28DRAFT_3319 at 621.655 kb on - strand, within EX28DRAFT_3319 at 621.682 kb on + strand, within EX28DRAFT_3319 at 621.682 kb on + strand, within EX28DRAFT_3319 at 621.683 kb on - strand, within EX28DRAFT_3319 at 621.683 kb on - strand, within EX28DRAFT_3319 at 621.709 kb on - strand, within EX28DRAFT_3319 at 621.726 kb on + strand, within EX28DRAFT_3319 at 621.727 kb on - strand, within EX28DRAFT_3319 at 621.730 kb on - strand, within EX28DRAFT_3319 at 621.800 kb on - strand, within EX28DRAFT_3319 at 621.800 kb on - strand, within EX28DRAFT_3319 at 621.800 kb on - strand, within EX28DRAFT_3319 at 621.823 kb on + strand, within EX28DRAFT_3319 at 621.823 kb on + strand, within EX28DRAFT_3319 at 621.877 kb on - strand, within EX28DRAFT_3319 at 621.895 kb on - strand, within EX28DRAFT_3319 at 621.997 kb on + strand, within EX28DRAFT_3319 at 621.998 kb on - strand, within EX28DRAFT_3319 at 622.042 kb on + strand, within EX28DRAFT_3319 at 622.145 kb on - strand, within EX28DRAFT_3319 at 622.216 kb on - strand at 622.484 kb on - strand at 622.525 kb on + strand at 622.572 kb on - strand at 622.572 kb on - strand at 622.586 kb on + strand at 622.586 kb on + strand at 622.605 kb on - strand at 622.607 kb on - strand at 622.607 kb on - strand at 622.615 kb on - strand at 622.669 kb on + strand at 622.674 kb on - strand at 622.771 kb on + strand at 622.860 kb on - strand, within EX28DRAFT_3320 at 623.094 kb on + strand at 623.095 kb on - strand at 623.096 kb on + strand at 623.097 kb on - strand at 623.097 kb on - strand at 623.193 kb on + strand at 623.231 kb on - strand at 623.323 kb on + strand at 623.333 kb on + strand at 623.334 kb on - strand at 623.390 kb on + strand at 623.403 kb on + strand at 623.430 kb on + strand at 623.431 kb on - strand at 623.451 kb on + strand at 623.452 kb on - strand at 623.452 kb on - strand at 623.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 618,474 + EX28DRAFT_3318 0.22 +0.6 618,475 - EX28DRAFT_3318 0.22 +0.2 618,495 - EX28DRAFT_3318 0.24 +0.4 618,515 + EX28DRAFT_3318 0.26 +0.6 618,516 - EX28DRAFT_3318 0.26 -0.1 618,527 + EX28DRAFT_3318 0.27 -0.5 618,624 - EX28DRAFT_3318 0.35 +0.1 618,624 - EX28DRAFT_3318 0.35 +0.1 618,641 + EX28DRAFT_3318 0.37 -0.1 618,641 + EX28DRAFT_3318 0.37 +0.1 618,718 + EX28DRAFT_3318 0.44 -0.0 618,719 - EX28DRAFT_3318 0.44 -1.7 618,719 - EX28DRAFT_3318 0.44 +0.4 618,719 - EX28DRAFT_3318 0.44 +0.1 618,852 - EX28DRAFT_3318 0.55 +0.3 619,187 - EX28DRAFT_3318 0.85 +0.5 619,413 - +0.0 619,549 - -0.2 619,600 + -0.1 619,600 + +0.4 619,600 + -1.7 619,600 + +0.4 619,601 - +0.4 619,601 - +0.1 619,601 - -0.1 619,601 - +1.5 619,601 - -0.2 619,601 - -0.0 619,601 - -2.1 619,601 - +0.2 619,601 - +0.3 619,601 - -0.4 619,601 - -0.5 619,601 - +0.1 619,601 - -0.7 619,601 - +0.5 619,601 - -0.4 619,601 - -0.7 619,602 + -0.9 619,602 + -0.0 619,602 + -0.2 619,602 + +0.3 619,602 + +0.3 619,602 + +0.2 619,602 + +0.5 619,602 + +0.2 619,602 + +0.5 619,602 + -0.7 619,603 - +0.2 619,603 - -0.5 619,603 - +0.2 619,603 - -0.2 619,603 - +0.2 619,841 - EX28DRAFT_3319 0.15 +0.3 619,841 - EX28DRAFT_3319 0.15 +0.1 620,245 - EX28DRAFT_3319 0.28 +0.3 620,289 + EX28DRAFT_3319 0.29 +0.2 620,290 - EX28DRAFT_3319 0.29 -0.8 620,339 + EX28DRAFT_3319 0.31 -0.3 620,340 - EX28DRAFT_3319 0.31 -0.8 620,344 + EX28DRAFT_3319 0.31 +0.4 620,345 - EX28DRAFT_3319 0.31 -1.0 620,437 + EX28DRAFT_3319 0.34 +0.1 620,437 + EX28DRAFT_3319 0.34 +0.1 620,544 + EX28DRAFT_3319 0.38 +0.3 620,544 + EX28DRAFT_3319 0.38 +0.3 620,545 - EX28DRAFT_3319 0.38 +0.4 620,545 - EX28DRAFT_3319 0.38 -0.3 620,577 - EX28DRAFT_3319 0.39 -0.8 620,892 + EX28DRAFT_3319 0.49 +0.1 620,917 - EX28DRAFT_3319 0.50 +1.5 620,947 + EX28DRAFT_3319 0.51 -0.2 620,947 + EX28DRAFT_3319 0.51 -0.1 620,947 + EX28DRAFT_3319 0.51 -0.0 620,947 + EX28DRAFT_3319 0.51 +0.2 620,948 - EX28DRAFT_3319 0.51 +0.4 620,968 - EX28DRAFT_3319 0.51 +0.4 621,001 + EX28DRAFT_3319 0.52 +0.5 621,001 + EX28DRAFT_3319 0.52 -1.0 621,002 - EX28DRAFT_3319 0.52 +0.3 621,080 + EX28DRAFT_3319 0.55 +0.1 621,081 - EX28DRAFT_3319 0.55 +0.2 621,085 - EX28DRAFT_3319 0.55 -0.9 621,085 - EX28DRAFT_3319 0.55 -0.3 621,085 - EX28DRAFT_3319 0.55 +0.6 621,213 + EX28DRAFT_3319 0.59 -0.1 621,213 + EX28DRAFT_3319 0.59 +0.4 621,214 - EX28DRAFT_3319 0.59 -1.0 621,538 - EX28DRAFT_3319 0.70 +0.1 621,641 - EX28DRAFT_3319 0.73 +0.3 621,655 - EX28DRAFT_3319 0.73 +0.0 621,682 + EX28DRAFT_3319 0.74 +0.7 621,682 + EX28DRAFT_3319 0.74 -0.1 621,683 - EX28DRAFT_3319 0.74 +0.3 621,683 - EX28DRAFT_3319 0.74 -0.2 621,709 - EX28DRAFT_3319 0.75 +1.4 621,726 + EX28DRAFT_3319 0.76 +0.2 621,727 - EX28DRAFT_3319 0.76 +0.3 621,730 - EX28DRAFT_3319 0.76 +0.4 621,800 - EX28DRAFT_3319 0.78 +0.5 621,800 - EX28DRAFT_3319 0.78 -0.3 621,800 - EX28DRAFT_3319 0.78 -0.0 621,823 + EX28DRAFT_3319 0.79 -0.2 621,823 + EX28DRAFT_3319 0.79 +0.0 621,877 - EX28DRAFT_3319 0.80 +0.5 621,895 - EX28DRAFT_3319 0.81 +0.3 621,997 + EX28DRAFT_3319 0.84 -0.5 621,998 - EX28DRAFT_3319 0.84 -1.2 622,042 + EX28DRAFT_3319 0.86 +1.0 622,145 - EX28DRAFT_3319 0.89 +0.0 622,216 - -0.3 622,484 - +0.6 622,525 + +0.0 622,572 - +0.2 622,572 - -0.4 622,586 + +0.4 622,586 + -1.4 622,605 - +0.5 622,607 - -0.1 622,607 - -0.4 622,615 - -0.1 622,669 + -0.2 622,674 - +0.2 622,771 + +0.4 622,860 - EX28DRAFT_3320 0.32 +0.6 623,094 + -2.4 623,095 - +0.6 623,096 + -0.5 623,097 - -0.9 623,097 - +0.1 623,193 + +0.6 623,231 - +0.4 623,323 + -0.5 623,333 + +0.8 623,334 - +0.3 623,390 + -0.3 623,403 + +0.6 623,430 + -0.2 623,431 - +0.3 623,451 + -0.3 623,452 - -0.1 623,452 - +0.8 623,483 + +0.3
Or see this region's nucleotide sequence