Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3318

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3317 and EX28DRAFT_3318 are separated by 387 nucleotidesEX28DRAFT_3318 and EX28DRAFT_3319 are separated by 11 nucleotides EX28DRAFT_3317: EX28DRAFT_3317 - transcriptional regulator, TetR family, at 617,114 to 617,833 _3317 EX28DRAFT_3318: EX28DRAFT_3318 - RND family efflux transporter, MFP subunit, at 618,221 to 619,360 _3318 EX28DRAFT_3319: EX28DRAFT_3319 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 619,372 to 622,485 _3319 Position (kb) 618 619 620Strain fitness (log2 ratio) -2 -1 0 1at 617.243 kb on + strand, within EX28DRAFT_3317at 617.243 kb on + strand, within EX28DRAFT_3317at 617.282 kb on - strand, within EX28DRAFT_3317at 617.315 kb on + strand, within EX28DRAFT_3317at 617.316 kb on - strand, within EX28DRAFT_3317at 617.415 kb on - strand, within EX28DRAFT_3317at 617.467 kb on + strand, within EX28DRAFT_3317at 617.488 kb on + strand, within EX28DRAFT_3317at 617.537 kb on - strand, within EX28DRAFT_3317at 617.538 kb on + strand, within EX28DRAFT_3317at 617.538 kb on + strand, within EX28DRAFT_3317at 617.539 kb on - strand, within EX28DRAFT_3317at 617.711 kb on - strand, within EX28DRAFT_3317at 617.890 kb on - strandat 618.038 kb on + strandat 618.156 kb on + strandat 618.344 kb on - strand, within EX28DRAFT_3318at 618.474 kb on + strand, within EX28DRAFT_3318at 618.475 kb on - strand, within EX28DRAFT_3318at 618.495 kb on - strand, within EX28DRAFT_3318at 618.515 kb on + strand, within EX28DRAFT_3318at 618.516 kb on - strand, within EX28DRAFT_3318at 618.527 kb on + strand, within EX28DRAFT_3318at 618.624 kb on - strand, within EX28DRAFT_3318at 618.624 kb on - strand, within EX28DRAFT_3318at 618.641 kb on + strand, within EX28DRAFT_3318at 618.641 kb on + strand, within EX28DRAFT_3318at 618.718 kb on + strand, within EX28DRAFT_3318at 618.719 kb on - strand, within EX28DRAFT_3318at 618.719 kb on - strand, within EX28DRAFT_3318at 618.719 kb on - strand, within EX28DRAFT_3318at 618.852 kb on - strand, within EX28DRAFT_3318at 619.187 kb on - strand, within EX28DRAFT_3318at 619.413 kb on - strandat 619.549 kb on - strandat 619.600 kb on + strandat 619.600 kb on + strandat 619.600 kb on + strandat 619.600 kb on + strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.601 kb on - strandat 619.602 kb on + strandat 619.602 kb on + strandat 619.602 kb on + strandat 619.602 kb on + strandat 619.602 kb on + strandat 619.602 kb on + strandat 619.602 kb on + strandat 619.602 kb on + strandat 619.602 kb on + strandat 619.602 kb on + strandat 619.603 kb on - strandat 619.603 kb on - strandat 619.603 kb on - strandat 619.603 kb on - strandat 619.603 kb on - strandat 619.841 kb on - strand, within EX28DRAFT_3319at 619.841 kb on - strand, within EX28DRAFT_3319at 620.245 kb on - strand, within EX28DRAFT_3319at 620.289 kb on + strand, within EX28DRAFT_3319at 620.290 kb on - strand, within EX28DRAFT_3319at 620.339 kb on + strand, within EX28DRAFT_3319at 620.340 kb on - strand, within EX28DRAFT_3319at 620.344 kb on + strand, within EX28DRAFT_3319at 620.345 kb on - strand, within EX28DRAFT_3319

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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617,243 + EX28DRAFT_3317 0.18 -0.2
617,243 + EX28DRAFT_3317 0.18 +1.1
617,282 - EX28DRAFT_3317 0.23 -0.2
617,315 + EX28DRAFT_3317 0.28 -0.3
617,316 - EX28DRAFT_3317 0.28 +0.1
617,415 - EX28DRAFT_3317 0.42 -0.2
617,467 + EX28DRAFT_3317 0.49 -1.2
617,488 + EX28DRAFT_3317 0.52 +0.3
617,537 - EX28DRAFT_3317 0.59 +0.2
617,538 + EX28DRAFT_3317 0.59 +1.1
617,538 + EX28DRAFT_3317 0.59 +0.0
617,539 - EX28DRAFT_3317 0.59 -1.7
617,711 - EX28DRAFT_3317 0.83 -0.3
617,890 - +0.3
618,038 + -0.7
618,156 + +0.2
618,344 - EX28DRAFT_3318 0.11 +0.1
618,474 + EX28DRAFT_3318 0.22 +0.6
618,475 - EX28DRAFT_3318 0.22 +0.2
618,495 - EX28DRAFT_3318 0.24 +0.4
618,515 + EX28DRAFT_3318 0.26 +0.6
618,516 - EX28DRAFT_3318 0.26 -0.1
618,527 + EX28DRAFT_3318 0.27 -0.5
618,624 - EX28DRAFT_3318 0.35 +0.1
618,624 - EX28DRAFT_3318 0.35 +0.1
618,641 + EX28DRAFT_3318 0.37 -0.1
618,641 + EX28DRAFT_3318 0.37 +0.1
618,718 + EX28DRAFT_3318 0.44 -0.0
618,719 - EX28DRAFT_3318 0.44 -1.7
618,719 - EX28DRAFT_3318 0.44 +0.4
618,719 - EX28DRAFT_3318 0.44 +0.1
618,852 - EX28DRAFT_3318 0.55 +0.3
619,187 - EX28DRAFT_3318 0.85 +0.5
619,413 - +0.0
619,549 - -0.2
619,600 + -0.1
619,600 + +0.4
619,600 + -1.7
619,600 + +0.4
619,601 - +0.4
619,601 - +0.1
619,601 - -0.1
619,601 - +1.5
619,601 - -0.2
619,601 - -0.0
619,601 - -2.1
619,601 - +0.2
619,601 - +0.3
619,601 - -0.4
619,601 - -0.5
619,601 - +0.1
619,601 - -0.7
619,601 - +0.5
619,601 - -0.4
619,601 - -0.7
619,602 + -0.9
619,602 + -0.0
619,602 + -0.2
619,602 + +0.3
619,602 + +0.3
619,602 + +0.2
619,602 + +0.5
619,602 + +0.2
619,602 + +0.5
619,602 + -0.7
619,603 - +0.2
619,603 - -0.5
619,603 - +0.2
619,603 - -0.2
619,603 - +0.2
619,841 - EX28DRAFT_3319 0.15 +0.3
619,841 - EX28DRAFT_3319 0.15 +0.1
620,245 - EX28DRAFT_3319 0.28 +0.3
620,289 + EX28DRAFT_3319 0.29 +0.2
620,290 - EX28DRAFT_3319 0.29 -0.8
620,339 + EX28DRAFT_3319 0.31 -0.3
620,340 - EX28DRAFT_3319 0.31 -0.8
620,344 + EX28DRAFT_3319 0.31 +0.4
620,345 - EX28DRAFT_3319 0.31 -1.0

Or see this region's nucleotide sequence