Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3303

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3302 and EX28DRAFT_3303 are separated by 182 nucleotidesEX28DRAFT_3303 and EX28DRAFT_3304 are separated by 77 nucleotides EX28DRAFT_3302: EX28DRAFT_3302 - diguanylate cyclase (GGDEF) domain, at 602,159 to 604,099 _3302 EX28DRAFT_3303: EX28DRAFT_3303 - putative quinone oxidoreductase, YhdH/YhfP family, at 604,282 to 605,256 _3303 EX28DRAFT_3304: EX28DRAFT_3304 - Sulfite oxidase and related enzymes, at 605,334 to 606,335 _3304 Position (kb) 604 605 606Strain fitness (log2 ratio) -2 -1 0 1at 603.404 kb on - strand, within EX28DRAFT_3302at 603.454 kb on + strand, within EX28DRAFT_3302at 603.739 kb on + strand, within EX28DRAFT_3302at 603.739 kb on + strand, within EX28DRAFT_3302at 603.740 kb on - strand, within EX28DRAFT_3302at 603.740 kb on - strand, within EX28DRAFT_3302at 603.740 kb on - strand, within EX28DRAFT_3302at 603.740 kb on - strand, within EX28DRAFT_3302at 603.740 kb on - strand, within EX28DRAFT_3302at 603.743 kb on + strand, within EX28DRAFT_3302at 603.743 kb on + strand, within EX28DRAFT_3302at 603.743 kb on + strand, within EX28DRAFT_3302at 603.744 kb on - strand, within EX28DRAFT_3302at 603.744 kb on - strand, within EX28DRAFT_3302at 603.744 kb on - strand, within EX28DRAFT_3302at 604.048 kb on + strandat 604.069 kb on + strandat 604.069 kb on + strandat 604.170 kb on - strandat 604.184 kb on - strandat 604.184 kb on - strandat 604.184 kb on - strandat 604.196 kb on - strandat 604.204 kb on - strandat 604.233 kb on - strandat 604.233 kb on - strandat 604.235 kb on - strandat 604.235 kb on - strandat 604.249 kb on - strandat 604.299 kb on - strandat 604.402 kb on + strand, within EX28DRAFT_3303at 604.403 kb on - strand, within EX28DRAFT_3303at 604.405 kb on - strand, within EX28DRAFT_3303at 604.529 kb on + strand, within EX28DRAFT_3303at 604.529 kb on + strand, within EX28DRAFT_3303at 604.530 kb on - strand, within EX28DRAFT_3303at 604.530 kb on - strand, within EX28DRAFT_3303at 604.827 kb on + strand, within EX28DRAFT_3303at 604.838 kb on - strand, within EX28DRAFT_3303at 604.945 kb on - strand, within EX28DRAFT_3303at 605.206 kb on - strandat 605.366 kb on - strandat 605.389 kb on + strandat 605.577 kb on - strand, within EX28DRAFT_3304at 605.601 kb on + strand, within EX28DRAFT_3304at 605.751 kb on - strand, within EX28DRAFT_3304at 605.751 kb on - strand, within EX28DRAFT_3304at 605.754 kb on + strand, within EX28DRAFT_3304at 605.755 kb on - strand, within EX28DRAFT_3304at 605.856 kb on + strand, within EX28DRAFT_3304at 605.856 kb on + strand, within EX28DRAFT_3304at 605.941 kb on - strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.969 kb on + strand, within EX28DRAFT_3304at 605.969 kb on + strand, within EX28DRAFT_3304at 605.969 kb on + strand, within EX28DRAFT_3304at 605.969 kb on + strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 606.080 kb on + strand, within EX28DRAFT_3304at 606.080 kb on + strand, within EX28DRAFT_3304at 606.081 kb on - strand, within EX28DRAFT_3304at 606.086 kb on + strand, within EX28DRAFT_3304at 606.098 kb on + strand, within EX28DRAFT_3304at 606.099 kb on - strand, within EX28DRAFT_3304

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
603,404 - EX28DRAFT_3302 0.64 -1.8
603,454 + EX28DRAFT_3302 0.67 -1.4
603,739 + EX28DRAFT_3302 0.81 -1.1
603,739 + EX28DRAFT_3302 0.81 +1.4
603,740 - EX28DRAFT_3302 0.81 +0.1
603,740 - EX28DRAFT_3302 0.81 -1.0
603,740 - EX28DRAFT_3302 0.81 -0.4
603,740 - EX28DRAFT_3302 0.81 -0.5
603,740 - EX28DRAFT_3302 0.81 +0.1
603,743 + EX28DRAFT_3302 0.82 -0.3
603,743 + EX28DRAFT_3302 0.82 -0.3
603,743 + EX28DRAFT_3302 0.82 +0.1
603,744 - EX28DRAFT_3302 0.82 -2.2
603,744 - EX28DRAFT_3302 0.82 -0.2
603,744 - EX28DRAFT_3302 0.82 -1.5
604,048 + -0.1
604,069 + +0.2
604,069 + -1.1
604,170 - -0.1
604,184 - +0.0
604,184 - +0.2
604,184 - +0.9
604,196 - +0.6
604,204 - +0.3
604,233 - -0.5
604,233 - -0.2
604,235 - +0.3
604,235 - +0.8
604,249 - +0.3
604,299 - +0.1
604,402 + EX28DRAFT_3303 0.12 -0.1
604,403 - EX28DRAFT_3303 0.12 +0.4
604,405 - EX28DRAFT_3303 0.13 +0.1
604,529 + EX28DRAFT_3303 0.25 +0.4
604,529 + EX28DRAFT_3303 0.25 +0.0
604,530 - EX28DRAFT_3303 0.25 -0.4
604,530 - EX28DRAFT_3303 0.25 +0.5
604,827 + EX28DRAFT_3303 0.56 +0.9
604,838 - EX28DRAFT_3303 0.57 -0.6
604,945 - EX28DRAFT_3303 0.68 +0.2
605,206 - +0.1
605,366 - -0.1
605,389 + +0.0
605,577 - EX28DRAFT_3304 0.24 +0.1
605,601 + EX28DRAFT_3304 0.27 +0.2
605,751 - EX28DRAFT_3304 0.42 -0.0
605,751 - EX28DRAFT_3304 0.42 +0.0
605,754 + EX28DRAFT_3304 0.42 +0.7
605,755 - EX28DRAFT_3304 0.42 +0.0
605,856 + EX28DRAFT_3304 0.52 +0.4
605,856 + EX28DRAFT_3304 0.52 +0.0
605,941 - EX28DRAFT_3304 0.61 -0.4
605,944 + EX28DRAFT_3304 0.61 -0.7
605,944 + EX28DRAFT_3304 0.61 +0.1
605,944 + EX28DRAFT_3304 0.61 -0.8
605,944 + EX28DRAFT_3304 0.61 +0.1
605,944 + EX28DRAFT_3304 0.61 +0.3
605,969 + EX28DRAFT_3304 0.63 +1.5
605,969 + EX28DRAFT_3304 0.63 +0.6
605,969 + EX28DRAFT_3304 0.63 +0.4
605,969 + EX28DRAFT_3304 0.63 -0.7
605,970 - EX28DRAFT_3304 0.63 +0.3
605,970 - EX28DRAFT_3304 0.63 -0.1
605,970 - EX28DRAFT_3304 0.63 +0.1
605,970 - EX28DRAFT_3304 0.63 -0.2
605,970 - EX28DRAFT_3304 0.63 +0.2
605,970 - EX28DRAFT_3304 0.63 +0.5
606,080 + EX28DRAFT_3304 0.74 -0.2
606,080 + EX28DRAFT_3304 0.74 -0.3
606,081 - EX28DRAFT_3304 0.75 +0.5
606,086 + EX28DRAFT_3304 0.75 +0.2
606,098 + EX28DRAFT_3304 0.76 +0.4
606,099 - EX28DRAFT_3304 0.76 +0.2

Or see this region's nucleotide sequence