Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3197

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3196 and EX28DRAFT_3197 overlap by 43 nucleotidesEX28DRAFT_3197 and EX28DRAFT_3198 are separated by 21 nucleotidesEX28DRAFT_3198 and EX28DRAFT_3199 are separated by 9 nucleotides EX28DRAFT_3196: EX28DRAFT_3196 - LppC putative lipoprotein, at 497,326 to 499,488 _3196 EX28DRAFT_3197: EX28DRAFT_3197 - TIGR00252 family protein, at 499,446 to 499,841 _3197 EX28DRAFT_3198: EX28DRAFT_3198 - Phosphoheptose isomerase, at 499,863 to 500,453 _3198 EX28DRAFT_3199: EX28DRAFT_3199 - Predicted periplasmic or secreted lipoprotein, at 500,463 to 501,038 _3199 Position (kb) 499 500Strain fitness (log2 ratio) -2 -1 0 1 2at 498.536 kb on - strand, within EX28DRAFT_3196at 498.763 kb on - strand, within EX28DRAFT_3196at 498.921 kb on - strand, within EX28DRAFT_3196at 499.066 kb on + strand, within EX28DRAFT_3196at 499.284 kb on - strandat 499.284 kb on - strandat 499.284 kb on - strandat 499.442 kb on + strandat 499.442 kb on + strandat 499.443 kb on - strandat 499.457 kb on - strandat 499.486 kb on + strandat 499.508 kb on + strand, within EX28DRAFT_3197at 499.633 kb on + strand, within EX28DRAFT_3197at 499.704 kb on - strand, within EX28DRAFT_3197at 499.704 kb on - strand, within EX28DRAFT_3197at 499.704 kb on - strand, within EX28DRAFT_3197at 499.742 kb on + strand, within EX28DRAFT_3197at 499.757 kb on + strand, within EX28DRAFT_3197at 499.815 kb on - strandat 499.839 kb on + strandat 499.840 kb on - strandat 499.840 kb on - strandat 499.850 kb on + strandat 499.851 kb on - strandat 499.878 kb on - strandat 500.099 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.387 kb on + strand, within EX28DRAFT_3198at 500.388 kb on - strand, within EX28DRAFT_3198at 500.388 kb on - strand, within EX28DRAFT_3198at 500.452 kb on - strandat 500.462 kb on + strandat 500.492 kb on + strandat 500.492 kb on + strandat 500.492 kb on + strandat 500.493 kb on - strandat 500.519 kb on + strandat 500.520 kb on - strandat 500.520 kb on - strandat 500.686 kb on - strand, within EX28DRAFT_3199at 500.794 kb on + strand, within EX28DRAFT_3199at 500.794 kb on + strand, within EX28DRAFT_3199at 500.794 kb on + strand, within EX28DRAFT_3199

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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498,536 - EX28DRAFT_3196 0.56 -2.6
498,763 - EX28DRAFT_3196 0.66 -0.1
498,921 - EX28DRAFT_3196 0.74 -0.3
499,066 + EX28DRAFT_3196 0.80 +0.1
499,284 - -0.0
499,284 - +0.1
499,284 - +0.7
499,442 + +0.5
499,442 + +0.1
499,443 - +0.3
499,457 - -0.2
499,486 + -0.5
499,508 + EX28DRAFT_3197 0.16 +0.0
499,633 + EX28DRAFT_3197 0.47 +0.2
499,704 - EX28DRAFT_3197 0.65 +0.4
499,704 - EX28DRAFT_3197 0.65 +1.3
499,704 - EX28DRAFT_3197 0.65 +0.4
499,742 + EX28DRAFT_3197 0.75 -0.2
499,757 + EX28DRAFT_3197 0.79 -0.3
499,815 - +1.0
499,839 + -0.2
499,840 - +1.6
499,840 - -0.0
499,850 + -0.2
499,851 - +0.5
499,878 - +0.3
500,099 + EX28DRAFT_3198 0.40 +0.6
500,387 + EX28DRAFT_3198 0.89 +0.1
500,387 + EX28DRAFT_3198 0.89 +0.3
500,387 + EX28DRAFT_3198 0.89 -1.3
500,387 + EX28DRAFT_3198 0.89 +0.8
500,387 + EX28DRAFT_3198 0.89 +0.4
500,387 + EX28DRAFT_3198 0.89 -0.7
500,388 - EX28DRAFT_3198 0.89 +0.8
500,388 - EX28DRAFT_3198 0.89 +1.8
500,452 - +0.2
500,462 + +0.3
500,492 + +0.3
500,492 + +0.3
500,492 + +0.4
500,493 - -0.2
500,519 + -0.0
500,520 - +0.7
500,520 - -0.4
500,686 - EX28DRAFT_3199 0.39 +0.3
500,794 + EX28DRAFT_3199 0.57 +1.4
500,794 + EX28DRAFT_3199 0.57 -0.8
500,794 + EX28DRAFT_3199 0.57 +0.3

Or see this region's nucleotide sequence