Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3111

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3109 and EX28DRAFT_3110 are separated by 56 nucleotidesEX28DRAFT_3110 and EX28DRAFT_3111 are separated by 11 nucleotidesEX28DRAFT_3111 and EX28DRAFT_3112 are separated by 58 nucleotidesEX28DRAFT_3112 and EX28DRAFT_3113 are separated by 50 nucleotides EX28DRAFT_3109: EX28DRAFT_3109 - Mu-like prophage FluMu protein gp41, at 419,079 to 419,387 _3109 EX28DRAFT_3110: EX28DRAFT_3110 - phage contractile tail tube protein, P2 family, at 419,444 to 419,962 _3110 EX28DRAFT_3111: EX28DRAFT_3111 - Phage tail sheath protein FI, at 419,974 to 421,161 _3111 EX28DRAFT_3112: EX28DRAFT_3112 - Site-specific recombinases, DNA invertase Pin homologs, at 421,220 to 421,813 _3112 EX28DRAFT_3113: EX28DRAFT_3113 - hypothetical protein, at 421,864 to 422,145 _3113 Position (kb) 419 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1at 419.000 kb on + strandat 419.117 kb on + strand, within EX28DRAFT_3109at 419.339 kb on + strand, within EX28DRAFT_3109at 419.339 kb on + strand, within EX28DRAFT_3109at 419.339 kb on + strand, within EX28DRAFT_3109at 419.379 kb on - strandat 419.379 kb on - strandat 419.851 kb on - strand, within EX28DRAFT_3110at 419.851 kb on - strand, within EX28DRAFT_3110at 419.907 kb on + strand, within EX28DRAFT_3110at 419.907 kb on + strand, within EX28DRAFT_3110at 419.908 kb on - strand, within EX28DRAFT_3110at 419.908 kb on - strand, within EX28DRAFT_3110at 419.908 kb on - strand, within EX28DRAFT_3110at 419.942 kb on - strandat 419.976 kb on - strandat 420.009 kb on - strandat 420.072 kb on - strandat 420.129 kb on - strand, within EX28DRAFT_3111at 420.150 kb on + strand, within EX28DRAFT_3111at 420.152 kb on + strand, within EX28DRAFT_3111at 420.153 kb on - strand, within EX28DRAFT_3111at 420.153 kb on - strand, within EX28DRAFT_3111at 420.231 kb on + strand, within EX28DRAFT_3111at 420.285 kb on + strand, within EX28DRAFT_3111at 420.331 kb on - strand, within EX28DRAFT_3111at 420.331 kb on - strand, within EX28DRAFT_3111at 420.487 kb on - strand, within EX28DRAFT_3111at 420.661 kb on - strand, within EX28DRAFT_3111at 420.680 kb on + strand, within EX28DRAFT_3111at 420.681 kb on - strand, within EX28DRAFT_3111at 420.822 kb on + strand, within EX28DRAFT_3111at 421.167 kb on + strandat 421.193 kb on + strandat 421.193 kb on + strandat 421.214 kb on + strandat 421.214 kb on + strandat 421.221 kb on + strandat 421.265 kb on + strandat 421.265 kb on + strandat 421.266 kb on - strandat 421.301 kb on - strand, within EX28DRAFT_3112at 421.495 kb on + strand, within EX28DRAFT_3112at 421.561 kb on + strand, within EX28DRAFT_3112at 421.606 kb on + strand, within EX28DRAFT_3112at 421.634 kb on + strand, within EX28DRAFT_3112at 421.635 kb on - strand, within EX28DRAFT_3112at 421.645 kb on + strand, within EX28DRAFT_3112at 421.645 kb on + strand, within EX28DRAFT_3112at 421.645 kb on + strand, within EX28DRAFT_3112at 421.646 kb on - strand, within EX28DRAFT_3112at 421.657 kb on + strand, within EX28DRAFT_3112at 421.657 kb on + strand, within EX28DRAFT_3112at 421.657 kb on + strand, within EX28DRAFT_3112at 421.658 kb on - strand, within EX28DRAFT_3112at 421.678 kb on + strand, within EX28DRAFT_3112at 421.679 kb on - strand, within EX28DRAFT_3112at 421.703 kb on - strand, within EX28DRAFT_3112at 421.714 kb on + strand, within EX28DRAFT_3112at 421.715 kb on - strand, within EX28DRAFT_3112at 421.764 kb on - strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.801 kb on - strandat 421.801 kb on - strandat 421.808 kb on - strandat 421.817 kb on - strandat 421.851 kb on + strandat 421.851 kb on + strandat 421.986 kb on - strand, within EX28DRAFT_3113at 422.035 kb on + strand, within EX28DRAFT_3113at 422.035 kb on + strand, within EX28DRAFT_3113at 422.036 kb on - strand, within EX28DRAFT_3113at 422.037 kb on + strand, within EX28DRAFT_3113at 422.038 kb on - strand, within EX28DRAFT_3113at 422.044 kb on - strand, within EX28DRAFT_3113at 422.097 kb on + strand, within EX28DRAFT_3113

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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419,000 + -0.0
419,117 + EX28DRAFT_3109 0.12 +0.4
419,339 + EX28DRAFT_3109 0.84 +0.0
419,339 + EX28DRAFT_3109 0.84 -0.5
419,339 + EX28DRAFT_3109 0.84 +0.2
419,379 - -0.4
419,379 - -0.6
419,851 - EX28DRAFT_3110 0.78 -0.0
419,851 - EX28DRAFT_3110 0.78 -0.4
419,907 + EX28DRAFT_3110 0.89 -0.2
419,907 + EX28DRAFT_3110 0.89 +0.0
419,908 - EX28DRAFT_3110 0.89 +0.8
419,908 - EX28DRAFT_3110 0.89 -3.6
419,908 - EX28DRAFT_3110 0.89 -0.4
419,942 - -0.1
419,976 - +0.0
420,009 - -0.7
420,072 - -0.0
420,129 - EX28DRAFT_3111 0.13 -0.2
420,150 + EX28DRAFT_3111 0.15 -0.2
420,152 + EX28DRAFT_3111 0.15 -0.0
420,153 - EX28DRAFT_3111 0.15 -0.0
420,153 - EX28DRAFT_3111 0.15 +0.6
420,231 + EX28DRAFT_3111 0.22 -0.5
420,285 + EX28DRAFT_3111 0.26 +0.1
420,331 - EX28DRAFT_3111 0.30 +0.5
420,331 - EX28DRAFT_3111 0.30 -0.5
420,487 - EX28DRAFT_3111 0.43 -2.1
420,661 - EX28DRAFT_3111 0.58 +0.0
420,680 + EX28DRAFT_3111 0.59 +0.1
420,681 - EX28DRAFT_3111 0.60 -0.3
420,822 + EX28DRAFT_3111 0.71 +0.0
421,167 + -0.4
421,193 + -0.6
421,193 + +0.5
421,214 + -0.3
421,214 + -0.1
421,221 + -0.0
421,265 + -0.1
421,265 + -0.3
421,266 - +0.1
421,301 - EX28DRAFT_3112 0.14 +0.0
421,495 + EX28DRAFT_3112 0.46 -0.1
421,561 + EX28DRAFT_3112 0.57 +1.3
421,606 + EX28DRAFT_3112 0.65 -0.4
421,634 + EX28DRAFT_3112 0.70 -0.0
421,635 - EX28DRAFT_3112 0.70 -0.1
421,645 + EX28DRAFT_3112 0.72 +0.1
421,645 + EX28DRAFT_3112 0.72 +0.6
421,645 + EX28DRAFT_3112 0.72 +0.0
421,646 - EX28DRAFT_3112 0.72 -0.1
421,657 + EX28DRAFT_3112 0.74 -0.4
421,657 + EX28DRAFT_3112 0.74 -0.0
421,657 + EX28DRAFT_3112 0.74 -0.3
421,658 - EX28DRAFT_3112 0.74 +0.3
421,678 + EX28DRAFT_3112 0.77 +0.1
421,679 - EX28DRAFT_3112 0.77 +0.0
421,703 - EX28DRAFT_3112 0.81 -0.0
421,714 + EX28DRAFT_3112 0.83 -0.5
421,715 - EX28DRAFT_3112 0.83 -0.1
421,764 - -0.1
421,796 + +0.0
421,796 + +0.0
421,796 + +0.4
421,796 + +0.0
421,796 + -0.6
421,796 + -0.5
421,797 - -0.1
421,797 - +0.5
421,797 - +1.0
421,797 - -1.1
421,797 - -0.1
421,797 - -2.1
421,801 - +0.0
421,801 - +0.6
421,808 - -0.0
421,817 - -0.2
421,851 + -1.7
421,851 + +0.1
421,986 - EX28DRAFT_3113 0.43 +0.5
422,035 + EX28DRAFT_3113 0.61 +0.5
422,035 + EX28DRAFT_3113 0.61 +0.1
422,036 - EX28DRAFT_3113 0.61 -0.5
422,037 + EX28DRAFT_3113 0.61 +0.1
422,038 - EX28DRAFT_3113 0.62 -0.6
422,044 - EX28DRAFT_3113 0.64 -2.4
422,097 + EX28DRAFT_3113 0.83 -0.3

Or see this region's nucleotide sequence