Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3041 and EX28DRAFT_3042 are separated by 103 nucleotides EX28DRAFT_3042 and EX28DRAFT_3043 are separated by 1 nucleotides EX28DRAFT_3043 and EX28DRAFT_3044 are separated by 42 nucleotides EX28DRAFT_3044 and EX28DRAFT_3045 are separated by 4 nucleotides
EX28DRAFT_3041: EX28DRAFT_3041 - hypothetical protein, at 350,140 to 350,643
_3041
EX28DRAFT_3042: EX28DRAFT_3042 - hypothetical protein, at 350,747 to 351,151
_3042
EX28DRAFT_3043: EX28DRAFT_3043 - hypothetical protein, at 351,153 to 351,602
_3043
EX28DRAFT_3044: EX28DRAFT_3044 - TonB system transport protein ExbD, group 1, at 351,645 to 352,070
_3044
EX28DRAFT_3045: EX28DRAFT_3045 - tonB-system energizer ExbB, at 352,075 to 352,806
_3045
Position (kb) 351
352 Strain fitness (log2 ratio) -1
0
1 at 350.174 kb on + strand at 350.174 kb on + strand at 350.406 kb on + strand, within EX28DRAFT_3041 at 350.431 kb on - strand, within EX28DRAFT_3041 at 350.609 kb on - strand at 350.774 kb on - strand at 350.912 kb on - strand, within EX28DRAFT_3042 at 350.941 kb on - strand, within EX28DRAFT_3042 at 351.215 kb on + strand, within EX28DRAFT_3043 at 351.216 kb on - strand, within EX28DRAFT_3043 at 351.273 kb on - strand, within EX28DRAFT_3043 at 351.273 kb on - strand, within EX28DRAFT_3043 at 351.275 kb on + strand, within EX28DRAFT_3043 at 351.275 kb on + strand, within EX28DRAFT_3043 at 351.276 kb on - strand, within EX28DRAFT_3043 at 351.369 kb on + strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.447 kb on + strand, within EX28DRAFT_3043 at 351.447 kb on + strand, within EX28DRAFT_3043 at 351.518 kb on + strand, within EX28DRAFT_3043 at 351.718 kb on - strand, within EX28DRAFT_3044 at 351.791 kb on + strand, within EX28DRAFT_3044 at 351.792 kb on - strand, within EX28DRAFT_3044 at 351.877 kb on + strand, within EX28DRAFT_3044 at 351.878 kb on - strand, within EX28DRAFT_3044 at 351.882 kb on - strand, within EX28DRAFT_3044 at 351.882 kb on - strand, within EX28DRAFT_3044 at 352.071 kb on - strand at 352.071 kb on - strand at 352.093 kb on - strand at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.224 kb on - strand, within EX28DRAFT_3045
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 350,174 + -0.1 350,174 + +0.2 350,406 + EX28DRAFT_3041 0.53 -0.3 350,431 - EX28DRAFT_3041 0.58 -0.4 350,609 - -0.2 350,774 - -0.8 350,912 - EX28DRAFT_3042 0.41 -0.5 350,941 - EX28DRAFT_3042 0.48 +0.2 351,215 + EX28DRAFT_3043 0.14 -0.1 351,216 - EX28DRAFT_3043 0.14 -0.8 351,273 - EX28DRAFT_3043 0.27 -0.8 351,273 - EX28DRAFT_3043 0.27 -0.0 351,275 + EX28DRAFT_3043 0.27 +0.3 351,275 + EX28DRAFT_3043 0.27 -0.2 351,276 - EX28DRAFT_3043 0.27 -1.5 351,369 + EX28DRAFT_3043 0.48 -0.1 351,395 - EX28DRAFT_3043 0.54 +0.0 351,395 - EX28DRAFT_3043 0.54 -1.3 351,395 - EX28DRAFT_3043 0.54 +0.5 351,395 - EX28DRAFT_3043 0.54 +0.4 351,447 + EX28DRAFT_3043 0.65 +0.1 351,447 + EX28DRAFT_3043 0.65 -0.1 351,518 + EX28DRAFT_3043 0.81 +0.3 351,718 - EX28DRAFT_3044 0.17 +0.3 351,791 + EX28DRAFT_3044 0.34 +0.4 351,792 - EX28DRAFT_3044 0.35 -1.0 351,877 + EX28DRAFT_3044 0.54 +0.2 351,878 - EX28DRAFT_3044 0.55 +0.4 351,882 - EX28DRAFT_3044 0.56 -1.0 351,882 - EX28DRAFT_3044 0.56 +0.6 352,071 - -1.3 352,071 - +0.1 352,093 - +0.6 352,223 + EX28DRAFT_3045 0.20 +0.8 352,223 + EX28DRAFT_3045 0.20 +0.1 352,223 + EX28DRAFT_3045 0.20 -0.2 352,223 + EX28DRAFT_3045 0.20 -0.3 352,224 - EX28DRAFT_3045 0.20 -0.8
Or see this region's nucleotide sequence