Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3031

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3029 and EX28DRAFT_3030 are separated by 73 nucleotidesEX28DRAFT_3030 and EX28DRAFT_3031 overlap by 11 nucleotidesEX28DRAFT_3031 and EX28DRAFT_3032 are separated by 24 nucleotides EX28DRAFT_3029: EX28DRAFT_3029 - hypothetical protein, at 341,055 to 341,387 _3029 EX28DRAFT_3030: EX28DRAFT_3030 - Esterase/lipase, at 341,461 to 342,363 _3030 EX28DRAFT_3031: EX28DRAFT_3031 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 342,353 to 343,249 _3031 EX28DRAFT_3032: EX28DRAFT_3032 - Sugar phosphate isomerases/epimerases, at 343,274 to 344,329 _3032 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1at 341.514 kb on + strandat 341.514 kb on + strandat 341.514 kb on + strandat 341.514 kb on + strandat 341.515 kb on - strandat 341.557 kb on + strand, within EX28DRAFT_3030at 341.592 kb on - strand, within EX28DRAFT_3030at 341.621 kb on + strand, within EX28DRAFT_3030at 341.622 kb on - strand, within EX28DRAFT_3030at 341.671 kb on - strand, within EX28DRAFT_3030at 341.687 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.800 kb on + strand, within EX28DRAFT_3030at 341.927 kb on - strand, within EX28DRAFT_3030at 342.035 kb on - strand, within EX28DRAFT_3030at 342.035 kb on - strand, within EX28DRAFT_3030at 342.080 kb on + strand, within EX28DRAFT_3030at 342.168 kb on + strand, within EX28DRAFT_3030at 342.171 kb on - strand, within EX28DRAFT_3030at 342.215 kb on + strand, within EX28DRAFT_3030at 342.215 kb on + strand, within EX28DRAFT_3030at 342.216 kb on - strand, within EX28DRAFT_3030at 342.216 kb on - strand, within EX28DRAFT_3030at 342.352 kb on - strandat 342.389 kb on + strandat 342.430 kb on + strandat 342.431 kb on - strandat 342.485 kb on + strand, within EX28DRAFT_3031at 342.653 kb on - strand, within EX28DRAFT_3031at 342.653 kb on - strand, within EX28DRAFT_3031at 342.654 kb on + strand, within EX28DRAFT_3031at 342.654 kb on + strand, within EX28DRAFT_3031at 342.654 kb on + strand, within EX28DRAFT_3031at 342.654 kb on + strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.704 kb on - strand, within EX28DRAFT_3031at 342.704 kb on - strand, within EX28DRAFT_3031at 342.715 kb on - strand, within EX28DRAFT_3031at 342.715 kb on - strand, within EX28DRAFT_3031at 342.929 kb on + strand, within EX28DRAFT_3031at 342.932 kb on + strand, within EX28DRAFT_3031at 342.932 kb on + strand, within EX28DRAFT_3031at 342.932 kb on + strand, within EX28DRAFT_3031at 342.932 kb on + strand, within EX28DRAFT_3031at 342.933 kb on - strand, within EX28DRAFT_3031at 342.937 kb on + strand, within EX28DRAFT_3031at 342.937 kb on + strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.971 kb on - strand, within EX28DRAFT_3031at 343.092 kb on + strand, within EX28DRAFT_3031at 343.092 kb on + strand, within EX28DRAFT_3031at 343.093 kb on - strand, within EX28DRAFT_3031at 343.102 kb on + strand, within EX28DRAFT_3031at 343.105 kb on - strand, within EX28DRAFT_3031at 343.194 kb on + strandat 343.194 kb on + strandat 343.195 kb on - strandat 343.236 kb on + strandat 343.289 kb on + strandat 343.361 kb on - strandat 343.452 kb on + strand, within EX28DRAFT_3032at 343.481 kb on - strand, within EX28DRAFT_3032at 343.557 kb on + strand, within EX28DRAFT_3032at 343.558 kb on - strand, within EX28DRAFT_3032at 343.561 kb on + strand, within EX28DRAFT_3032at 343.626 kb on + strand, within EX28DRAFT_3032at 343.648 kb on - strand, within EX28DRAFT_3032at 343.665 kb on - strand, within EX28DRAFT_3032at 343.723 kb on - strand, within EX28DRAFT_3032at 343.789 kb on + strand, within EX28DRAFT_3032at 344.043 kb on - strand, within EX28DRAFT_3032at 344.063 kb on + strand, within EX28DRAFT_3032at 344.063 kb on + strand, within EX28DRAFT_3032at 344.064 kb on - strand, within EX28DRAFT_3032at 344.131 kb on + strand, within EX28DRAFT_3032

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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341,514 + -0.5
341,514 + +0.7
341,514 + -0.7
341,514 + -0.1
341,515 - -0.0
341,557 + EX28DRAFT_3030 0.11 +0.3
341,592 - EX28DRAFT_3030 0.15 -0.1
341,621 + EX28DRAFT_3030 0.18 +0.3
341,622 - EX28DRAFT_3030 0.18 +0.3
341,671 - EX28DRAFT_3030 0.23 -0.7
341,687 + EX28DRAFT_3030 0.25 +0.0
341,750 + EX28DRAFT_3030 0.32 -0.2
341,750 + EX28DRAFT_3030 0.32 +0.6
341,750 + EX28DRAFT_3030 0.32 -0.2
341,751 - EX28DRAFT_3030 0.32 -2.0
341,751 - EX28DRAFT_3030 0.32 +0.4
341,751 - EX28DRAFT_3030 0.32 -0.2
341,751 - EX28DRAFT_3030 0.32 +0.6
341,751 - EX28DRAFT_3030 0.32 -0.1
341,800 + EX28DRAFT_3030 0.38 -0.3
341,927 - EX28DRAFT_3030 0.52 -0.2
342,035 - EX28DRAFT_3030 0.64 -0.2
342,035 - EX28DRAFT_3030 0.64 +0.1
342,080 + EX28DRAFT_3030 0.69 +0.3
342,168 + EX28DRAFT_3030 0.78 +0.1
342,171 - EX28DRAFT_3030 0.79 -0.4
342,215 + EX28DRAFT_3030 0.83 -0.1
342,215 + EX28DRAFT_3030 0.83 -0.6
342,216 - EX28DRAFT_3030 0.84 +0.4
342,216 - EX28DRAFT_3030 0.84 -0.1
342,352 - +0.1
342,389 + -0.5
342,430 + -0.4
342,431 - -0.2
342,485 + EX28DRAFT_3031 0.15 -0.2
342,653 - EX28DRAFT_3031 0.33 -0.2
342,653 - EX28DRAFT_3031 0.33 -0.3
342,654 + EX28DRAFT_3031 0.34 +0.4
342,654 + EX28DRAFT_3031 0.34 +0.4
342,654 + EX28DRAFT_3031 0.34 +0.1
342,654 + EX28DRAFT_3031 0.34 +0.1
342,655 - EX28DRAFT_3031 0.34 -0.0
342,655 - EX28DRAFT_3031 0.34 +0.2
342,655 - EX28DRAFT_3031 0.34 +0.0
342,655 - EX28DRAFT_3031 0.34 -1.2
342,655 - EX28DRAFT_3031 0.34 -0.3
342,655 - EX28DRAFT_3031 0.34 -0.5
342,655 - EX28DRAFT_3031 0.34 -0.1
342,655 - EX28DRAFT_3031 0.34 -0.6
342,704 - EX28DRAFT_3031 0.39 -0.4
342,704 - EX28DRAFT_3031 0.39 -0.3
342,715 - EX28DRAFT_3031 0.40 -0.0
342,715 - EX28DRAFT_3031 0.40 +0.7
342,929 + EX28DRAFT_3031 0.64 -0.3
342,932 + EX28DRAFT_3031 0.65 +0.1
342,932 + EX28DRAFT_3031 0.65 -0.9
342,932 + EX28DRAFT_3031 0.65 +0.3
342,932 + EX28DRAFT_3031 0.65 +0.0
342,933 - EX28DRAFT_3031 0.65 -0.4
342,937 + EX28DRAFT_3031 0.65 -1.1
342,937 + EX28DRAFT_3031 0.65 -0.1
342,938 - EX28DRAFT_3031 0.65 -1.3
342,938 - EX28DRAFT_3031 0.65 -0.1
342,938 - EX28DRAFT_3031 0.65 +0.6
342,938 - EX28DRAFT_3031 0.65 -0.2
342,938 - EX28DRAFT_3031 0.65 -0.6
342,938 - EX28DRAFT_3031 0.65 +0.1
342,938 - EX28DRAFT_3031 0.65 -0.8
342,938 - EX28DRAFT_3031 0.65 +0.2
342,971 - EX28DRAFT_3031 0.69 -1.0
343,092 + EX28DRAFT_3031 0.82 -0.1
343,092 + EX28DRAFT_3031 0.82 -0.7
343,093 - EX28DRAFT_3031 0.82 -0.5
343,102 + EX28DRAFT_3031 0.84 -0.3
343,105 - EX28DRAFT_3031 0.84 -0.1
343,194 + -0.3
343,194 + +0.2
343,195 - +0.5
343,236 + +0.1
343,289 + +0.6
343,361 - -2.2
343,452 + EX28DRAFT_3032 0.17 -0.1
343,481 - EX28DRAFT_3032 0.20 +0.5
343,557 + EX28DRAFT_3032 0.27 +0.2
343,558 - EX28DRAFT_3032 0.27 +0.2
343,561 + EX28DRAFT_3032 0.27 -0.5
343,626 + EX28DRAFT_3032 0.33 -1.7
343,648 - EX28DRAFT_3032 0.35 -0.1
343,665 - EX28DRAFT_3032 0.37 -0.1
343,723 - EX28DRAFT_3032 0.43 -0.1
343,789 + EX28DRAFT_3032 0.49 +0.3
344,043 - EX28DRAFT_3032 0.73 +0.7
344,063 + EX28DRAFT_3032 0.75 +0.5
344,063 + EX28DRAFT_3032 0.75 +0.2
344,064 - EX28DRAFT_3032 0.75 -0.4
344,131 + EX28DRAFT_3032 0.81 +0.4

Or see this region's nucleotide sequence