Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2986 and EX28DRAFT_2987 overlap by 1 nucleotides EX28DRAFT_2987 and EX28DRAFT_2988 are separated by 10 nucleotides EX28DRAFT_2988 and EX28DRAFT_2989 are separated by 17 nucleotides EX28DRAFT_2989 and EX28DRAFT_2990 are separated by 21 nucleotides
EX28DRAFT_2986: EX28DRAFT_2986 - Putative transcriptional regulator, at 298,827 to 299,387
_2986
EX28DRAFT_2987: EX28DRAFT_2987 - RNAse H-fold protein YqgF, at 299,387 to 299,803
_2987
EX28DRAFT_2988: EX28DRAFT_2988 - pilus retraction protein PilT, at 299,814 to 300,794
_2988
EX28DRAFT_2989: EX28DRAFT_2989 - pyridoxal phosphate enzyme, YggS family, at 300,812 to 301,513
_2989
EX28DRAFT_2990: EX28DRAFT_2990 - Predicted integral membrane protein, at 301,535 to 302,101
_2990
Position (kb) 299
300
301 Strain fitness (log2 ratio) -1
0
1
2 at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.816 kb on + strand at 298.899 kb on + strand, within EX28DRAFT_2986 at 298.911 kb on + strand, within EX28DRAFT_2986 at 299.098 kb on + strand, within EX28DRAFT_2986 at 299.111 kb on + strand, within EX28DRAFT_2986 at 299.211 kb on + strand, within EX28DRAFT_2986 at 299.815 kb on + strand at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.965 kb on + strand, within EX28DRAFT_2988 at 299.966 kb on - strand, within EX28DRAFT_2988 at 300.308 kb on - strand, within EX28DRAFT_2988 at 300.308 kb on - strand, within EX28DRAFT_2988 at 300.311 kb on + strand, within EX28DRAFT_2988 at 300.312 kb on - strand, within EX28DRAFT_2988 at 300.342 kb on - strand, within EX28DRAFT_2988 at 300.390 kb on - strand, within EX28DRAFT_2988 at 300.639 kb on - strand, within EX28DRAFT_2988 at 300.651 kb on + strand, within EX28DRAFT_2988 at 300.651 kb on + strand, within EX28DRAFT_2988 at 300.741 kb on + strand at 300.742 kb on - strand at 300.756 kb on - strand at 300.762 kb on + strand at 300.767 kb on + strand at 300.768 kb on - strand at 300.795 kb on - strand at 300.795 kb on - strand at 300.799 kb on + strand at 300.799 kb on + strand at 300.800 kb on - strand at 300.949 kb on + strand, within EX28DRAFT_2989 at 300.949 kb on + strand, within EX28DRAFT_2989 at 300.984 kb on - strand, within EX28DRAFT_2989 at 300.984 kb on - strand, within EX28DRAFT_2989 at 301.180 kb on + strand, within EX28DRAFT_2989 at 301.329 kb on - strand, within EX28DRAFT_2989 at 301.365 kb on + strand, within EX28DRAFT_2989 at 301.381 kb on + strand, within EX28DRAFT_2989 at 301.382 kb on - strand, within EX28DRAFT_2989 at 301.393 kb on + strand, within EX28DRAFT_2989 at 301.393 kb on + strand, within EX28DRAFT_2989 at 301.401 kb on + strand, within EX28DRAFT_2989 at 301.432 kb on + strand, within EX28DRAFT_2989 at 301.462 kb on + strand at 301.511 kb on + strand at 301.512 kb on - strand at 301.514 kb on + strand at 301.515 kb on - strand at 301.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 298,816 + +2.7 298,816 + -1.7 298,816 + -0.4 298,816 + +0.4 298,816 + -0.1 298,899 + EX28DRAFT_2986 0.13 +0.6 298,911 + EX28DRAFT_2986 0.15 -0.2 299,098 + EX28DRAFT_2986 0.48 -0.4 299,111 + EX28DRAFT_2986 0.51 +0.2 299,211 + EX28DRAFT_2986 0.68 -0.1 299,815 + -1.4 299,965 + EX28DRAFT_2988 0.15 -0.5 299,965 + EX28DRAFT_2988 0.15 +0.2 299,965 + EX28DRAFT_2988 0.15 +1.3 299,966 - EX28DRAFT_2988 0.15 -0.4 300,308 - EX28DRAFT_2988 0.50 -1.2 300,308 - EX28DRAFT_2988 0.50 +0.3 300,311 + EX28DRAFT_2988 0.51 +0.2 300,312 - EX28DRAFT_2988 0.51 +0.2 300,342 - EX28DRAFT_2988 0.54 +0.3 300,390 - EX28DRAFT_2988 0.59 +0.3 300,639 - EX28DRAFT_2988 0.84 -0.3 300,651 + EX28DRAFT_2988 0.85 +0.8 300,651 + EX28DRAFT_2988 0.85 +0.1 300,741 + +0.3 300,742 - -1.4 300,756 - -0.2 300,762 + +0.6 300,767 + +0.7 300,768 - -0.2 300,795 - -0.5 300,795 - +0.4 300,799 + -0.2 300,799 + -0.3 300,800 - +0.0 300,949 + EX28DRAFT_2989 0.20 +0.4 300,949 + EX28DRAFT_2989 0.20 -0.3 300,984 - EX28DRAFT_2989 0.25 -0.0 300,984 - EX28DRAFT_2989 0.25 +0.3 301,180 + EX28DRAFT_2989 0.52 -0.6 301,329 - EX28DRAFT_2989 0.74 +0.5 301,365 + EX28DRAFT_2989 0.79 +0.3 301,381 + EX28DRAFT_2989 0.81 -0.8 301,382 - EX28DRAFT_2989 0.81 +1.6 301,393 + EX28DRAFT_2989 0.83 -0.0 301,393 + EX28DRAFT_2989 0.83 -0.3 301,401 + EX28DRAFT_2989 0.84 -0.1 301,432 + EX28DRAFT_2989 0.88 +1.9 301,462 + +0.1 301,511 + +0.7 301,512 - -0.0 301,514 + +0.2 301,515 - -0.2 301,579 + +0.3
Or see this region's nucleotide sequence