Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2976

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2975 and EX28DRAFT_2976 are separated by 210 nucleotidesEX28DRAFT_2976 and EX28DRAFT_2977 are separated by 52 nucleotides EX28DRAFT_2975: EX28DRAFT_2975 - Zn-dependent protease with chaperone function, at 286,451 to 287,257 _2975 EX28DRAFT_2976: EX28DRAFT_2976 - outer membrane porin, OprD family, at 287,468 to 288,736 _2976 EX28DRAFT_2977: EX28DRAFT_2977 - agmatinase, at 288,789 to 289,709 _2977 Position (kb) 287 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 286.468 kb on + strandat 286.469 kb on - strandat 286.469 kb on - strandat 286.477 kb on + strandat 286.515 kb on + strandat 286.657 kb on + strand, within EX28DRAFT_2975at 286.658 kb on - strand, within EX28DRAFT_2975at 286.664 kb on - strand, within EX28DRAFT_2975at 286.699 kb on + strand, within EX28DRAFT_2975at 286.699 kb on + strand, within EX28DRAFT_2975at 286.700 kb on - strand, within EX28DRAFT_2975at 286.700 kb on - strand, within EX28DRAFT_2975at 286.704 kb on - strand, within EX28DRAFT_2975at 286.778 kb on + strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.833 kb on - strand, within EX28DRAFT_2975at 287.038 kb on + strand, within EX28DRAFT_2975at 287.081 kb on + strand, within EX28DRAFT_2975at 287.081 kb on + strand, within EX28DRAFT_2975at 287.081 kb on + strand, within EX28DRAFT_2975at 287.088 kb on - strand, within EX28DRAFT_2975at 287.114 kb on - strand, within EX28DRAFT_2975at 287.221 kb on + strandat 287.261 kb on + strandat 287.310 kb on + strandat 287.383 kb on + strandat 287.439 kb on + strandat 287.481 kb on + strandat 287.481 kb on + strandat 287.594 kb on + strandat 287.594 kb on + strandat 287.594 kb on + strandat 287.594 kb on + strandat 287.595 kb on - strand, within EX28DRAFT_2976at 287.595 kb on - strand, within EX28DRAFT_2976at 287.845 kb on + strand, within EX28DRAFT_2976at 287.846 kb on - strand, within EX28DRAFT_2976at 287.846 kb on - strand, within EX28DRAFT_2976at 287.894 kb on - strand, within EX28DRAFT_2976at 287.899 kb on + strand, within EX28DRAFT_2976at 287.933 kb on + strand, within EX28DRAFT_2976at 287.990 kb on + strand, within EX28DRAFT_2976at 288.068 kb on + strand, within EX28DRAFT_2976at 288.138 kb on - strand, within EX28DRAFT_2976at 288.205 kb on + strand, within EX28DRAFT_2976at 288.205 kb on + strand, within EX28DRAFT_2976at 288.285 kb on - strand, within EX28DRAFT_2976at 288.344 kb on + strand, within EX28DRAFT_2976at 288.344 kb on + strand, within EX28DRAFT_2976at 288.416 kb on + strand, within EX28DRAFT_2976at 288.593 kb on + strand, within EX28DRAFT_2976at 288.641 kb on + strandat 288.708 kb on - strandat 288.708 kb on - strandat 288.725 kb on - strandat 288.734 kb on + strandat 288.941 kb on + strand, within EX28DRAFT_2977at 289.033 kb on + strand, within EX28DRAFT_2977at 289.033 kb on + strand, within EX28DRAFT_2977at 289.033 kb on + strand, within EX28DRAFT_2977at 289.034 kb on - strand, within EX28DRAFT_2977at 289.043 kb on + strand, within EX28DRAFT_2977at 289.043 kb on + strand, within EX28DRAFT_2977at 289.043 kb on + strand, within EX28DRAFT_2977at 289.044 kb on - strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.214 kb on + strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.215 kb on - strand, within EX28DRAFT_2977at 289.286 kb on + strand, within EX28DRAFT_2977at 289.651 kb on - strandat 289.672 kb on - strandat 289.698 kb on + strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.699 kb on - strandat 289.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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286,468 + +0.3
286,469 - +0.3
286,469 - +1.1
286,477 + +0.1
286,515 + +0.1
286,657 + EX28DRAFT_2975 0.26 +1.3
286,658 - EX28DRAFT_2975 0.26 +0.3
286,664 - EX28DRAFT_2975 0.26 +0.8
286,699 + EX28DRAFT_2975 0.31 -0.2
286,699 + EX28DRAFT_2975 0.31 -0.3
286,700 - EX28DRAFT_2975 0.31 -0.8
286,700 - EX28DRAFT_2975 0.31 -0.5
286,704 - EX28DRAFT_2975 0.31 +0.1
286,778 + EX28DRAFT_2975 0.41 -0.0
286,779 - EX28DRAFT_2975 0.41 -0.2
286,779 - EX28DRAFT_2975 0.41 +0.0
286,779 - EX28DRAFT_2975 0.41 -1.0
286,779 - EX28DRAFT_2975 0.41 +0.0
286,779 - EX28DRAFT_2975 0.41 -0.5
286,833 - EX28DRAFT_2975 0.47 -0.0
287,038 + EX28DRAFT_2975 0.73 +0.3
287,081 + EX28DRAFT_2975 0.78 -0.5
287,081 + EX28DRAFT_2975 0.78 +0.1
287,081 + EX28DRAFT_2975 0.78 +0.3
287,088 - EX28DRAFT_2975 0.79 +0.8
287,114 - EX28DRAFT_2975 0.82 -0.9
287,221 + -0.4
287,261 + -0.0
287,310 + +0.2
287,383 + +2.4
287,439 + +0.4
287,481 + -0.0
287,481 + +0.2
287,594 + +0.5
287,594 + +0.1
287,594 + -0.0
287,594 + -0.2
287,595 - EX28DRAFT_2976 0.10 -0.2
287,595 - EX28DRAFT_2976 0.10 +0.6
287,845 + EX28DRAFT_2976 0.30 +0.2
287,846 - EX28DRAFT_2976 0.30 -0.1
287,846 - EX28DRAFT_2976 0.30 +2.2
287,894 - EX28DRAFT_2976 0.34 +0.3
287,899 + EX28DRAFT_2976 0.34 +0.4
287,933 + EX28DRAFT_2976 0.37 -0.7
287,990 + EX28DRAFT_2976 0.41 -0.1
288,068 + EX28DRAFT_2976 0.47 -0.7
288,138 - EX28DRAFT_2976 0.53 +0.0
288,205 + EX28DRAFT_2976 0.58 +0.2
288,205 + EX28DRAFT_2976 0.58 +0.4
288,285 - EX28DRAFT_2976 0.64 -0.1
288,344 + EX28DRAFT_2976 0.69 +1.0
288,344 + EX28DRAFT_2976 0.69 -0.1
288,416 + EX28DRAFT_2976 0.75 -3.3
288,593 + EX28DRAFT_2976 0.89 +1.2
288,641 + +0.5
288,708 - -0.4
288,708 - -0.3
288,725 - -0.5
288,734 + -0.3
288,941 + EX28DRAFT_2977 0.17 +0.2
289,033 + EX28DRAFT_2977 0.26 +0.0
289,033 + EX28DRAFT_2977 0.26 -0.1
289,033 + EX28DRAFT_2977 0.26 -0.5
289,034 - EX28DRAFT_2977 0.27 +0.6
289,043 + EX28DRAFT_2977 0.28 -0.3
289,043 + EX28DRAFT_2977 0.28 -0.1
289,043 + EX28DRAFT_2977 0.28 -0.1
289,044 - EX28DRAFT_2977 0.28 -0.3
289,214 + EX28DRAFT_2977 0.46 +0.1
289,214 + EX28DRAFT_2977 0.46 +0.4
289,214 + EX28DRAFT_2977 0.46 +0.7
289,214 + EX28DRAFT_2977 0.46 +0.0
289,214 + EX28DRAFT_2977 0.46 -0.1
289,215 - EX28DRAFT_2977 0.46 +0.2
289,215 - EX28DRAFT_2977 0.46 -0.7
289,215 - EX28DRAFT_2977 0.46 +0.4
289,215 - EX28DRAFT_2977 0.46 +0.1
289,215 - EX28DRAFT_2977 0.46 -0.3
289,286 + EX28DRAFT_2977 0.54 +0.1
289,651 - -0.6
289,672 - +0.1
289,698 + +0.3
289,699 - -0.3
289,699 - +0.1
289,699 - +0.5
289,699 - +0.0
289,699 - +0.4

Or see this region's nucleotide sequence