Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2952

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2950 and EX28DRAFT_2951 are separated by 165 nucleotidesEX28DRAFT_2951 and EX28DRAFT_2952 are separated by 51 nucleotidesEX28DRAFT_2952 and EX28DRAFT_2953 are separated by 116 nucleotides EX28DRAFT_2950: EX28DRAFT_2950 - channel protein, hemolysin III family, at 259,577 to 260,236 _2950 EX28DRAFT_2951: EX28DRAFT_2951 - Uncharacterized protein conserved in bacteria, at 260,402 to 260,713 _2951 EX28DRAFT_2952: EX28DRAFT_2952 - transcriptional regulator, RpiR family, at 260,765 to 261,496 _2952 EX28DRAFT_2953: EX28DRAFT_2953 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 261,613 to 263,046 _2953 Position (kb) 260 261 262Strain fitness (log2 ratio) -2 -1 0 1at 259.767 kb on + strand, within EX28DRAFT_2950at 259.768 kb on - strand, within EX28DRAFT_2950at 259.803 kb on + strand, within EX28DRAFT_2950at 259.803 kb on + strand, within EX28DRAFT_2950at 259.849 kb on + strand, within EX28DRAFT_2950at 259.849 kb on + strand, within EX28DRAFT_2950at 259.941 kb on + strand, within EX28DRAFT_2950at 259.941 kb on + strand, within EX28DRAFT_2950at 259.941 kb on + strand, within EX28DRAFT_2950at 259.942 kb on - strand, within EX28DRAFT_2950at 259.942 kb on - strand, within EX28DRAFT_2950at 259.962 kb on + strand, within EX28DRAFT_2950at 259.963 kb on - strand, within EX28DRAFT_2950at 259.963 kb on - strand, within EX28DRAFT_2950at 259.966 kb on + strand, within EX28DRAFT_2950at 259.966 kb on + strand, within EX28DRAFT_2950at 260.057 kb on - strand, within EX28DRAFT_2950at 260.076 kb on + strand, within EX28DRAFT_2950at 260.129 kb on + strand, within EX28DRAFT_2950at 260.276 kb on + strandat 260.276 kb on + strandat 260.280 kb on + strandat 260.280 kb on + strandat 260.280 kb on + strandat 260.280 kb on + strandat 260.281 kb on - strandat 260.281 kb on - strandat 260.281 kb on - strandat 260.286 kb on - strandat 260.351 kb on - strandat 260.364 kb on + strandat 260.477 kb on - strand, within EX28DRAFT_2951at 260.477 kb on - strand, within EX28DRAFT_2951at 260.568 kb on + strand, within EX28DRAFT_2951at 260.717 kb on - strandat 260.752 kb on - strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.823 kb on - strandat 260.823 kb on - strandat 260.823 kb on - strandat 260.823 kb on - strandat 260.852 kb on + strand, within EX28DRAFT_2952at 260.852 kb on + strand, within EX28DRAFT_2952at 260.852 kb on + strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.927 kb on - strand, within EX28DRAFT_2952at 261.066 kb on + strand, within EX28DRAFT_2952at 261.082 kb on + strand, within EX28DRAFT_2952at 261.106 kb on + strand, within EX28DRAFT_2952at 261.108 kb on + strand, within EX28DRAFT_2952at 261.203 kb on + strand, within EX28DRAFT_2952at 261.332 kb on - strand, within EX28DRAFT_2952at 261.373 kb on + strand, within EX28DRAFT_2952at 261.446 kb on + strandat 261.449 kb on - strandat 261.518 kb on - strandat 261.544 kb on + strandat 261.588 kb on - strandat 261.770 kb on + strand, within EX28DRAFT_2953at 261.771 kb on - strand, within EX28DRAFT_2953at 261.771 kb on - strand, within EX28DRAFT_2953at 261.784 kb on + strand, within EX28DRAFT_2953at 261.784 kb on + strand, within EX28DRAFT_2953at 261.784 kb on + strand, within EX28DRAFT_2953at 261.785 kb on - strand, within EX28DRAFT_2953at 261.823 kb on + strand, within EX28DRAFT_2953at 261.823 kb on + strand, within EX28DRAFT_2953at 261.825 kb on + strand, within EX28DRAFT_2953at 261.825 kb on + strand, within EX28DRAFT_2953at 261.825 kb on + strand, within EX28DRAFT_2953at 261.826 kb on - strand, within EX28DRAFT_2953at 261.826 kb on - strand, within EX28DRAFT_2953at 261.826 kb on - strand, within EX28DRAFT_2953at 261.977 kb on - strand, within EX28DRAFT_2953at 262.039 kb on + strand, within EX28DRAFT_2953at 262.040 kb on - strand, within EX28DRAFT_2953at 262.126 kb on + strand, within EX28DRAFT_2953at 262.208 kb on - strand, within EX28DRAFT_2953at 262.210 kb on - strand, within EX28DRAFT_2953at 262.240 kb on + strand, within EX28DRAFT_2953at 262.408 kb on + strand, within EX28DRAFT_2953at 262.438 kb on + strand, within EX28DRAFT_2953at 262.450 kb on + strand, within EX28DRAFT_2953at 262.450 kb on + strand, within EX28DRAFT_2953at 262.451 kb on - strand, within EX28DRAFT_2953

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
259,767 + EX28DRAFT_2950 0.29 +0.2
259,768 - EX28DRAFT_2950 0.29 +0.1
259,803 + EX28DRAFT_2950 0.34 +0.1
259,803 + EX28DRAFT_2950 0.34 -0.7
259,849 + EX28DRAFT_2950 0.41 +0.5
259,849 + EX28DRAFT_2950 0.41 +0.1
259,941 + EX28DRAFT_2950 0.55 +0.2
259,941 + EX28DRAFT_2950 0.55 +0.1
259,941 + EX28DRAFT_2950 0.55 +1.2
259,942 - EX28DRAFT_2950 0.55 +0.0
259,942 - EX28DRAFT_2950 0.55 +0.8
259,962 + EX28DRAFT_2950 0.58 +1.1
259,963 - EX28DRAFT_2950 0.58 -0.0
259,963 - EX28DRAFT_2950 0.58 -1.5
259,966 + EX28DRAFT_2950 0.59 -0.1
259,966 + EX28DRAFT_2950 0.59 +0.7
260,057 - EX28DRAFT_2950 0.73 -0.4
260,076 + EX28DRAFT_2950 0.76 +0.7
260,129 + EX28DRAFT_2950 0.84 +0.1
260,276 + +0.2
260,276 + -0.2
260,280 + -1.5
260,280 + -2.1
260,280 + -0.6
260,280 + -0.3
260,281 - -0.0
260,281 - +0.5
260,281 - -0.1
260,286 - +0.9
260,351 - +0.7
260,364 + -0.1
260,477 - EX28DRAFT_2951 0.24 -0.1
260,477 - EX28DRAFT_2951 0.24 -0.0
260,568 + EX28DRAFT_2951 0.53 -0.8
260,717 - +0.3
260,752 - +0.1
260,822 + -0.2
260,822 + -0.1
260,822 + +1.5
260,822 + +0.5
260,823 - -0.0
260,823 - +1.3
260,823 - +0.3
260,823 - +0.9
260,852 + EX28DRAFT_2952 0.12 -0.3
260,852 + EX28DRAFT_2952 0.12 -0.2
260,852 + EX28DRAFT_2952 0.12 -0.3
260,853 - EX28DRAFT_2952 0.12 -0.5
260,853 - EX28DRAFT_2952 0.12 -0.4
260,853 - EX28DRAFT_2952 0.12 -0.9
260,853 - EX28DRAFT_2952 0.12 -0.2
260,927 - EX28DRAFT_2952 0.22 -0.4
261,066 + EX28DRAFT_2952 0.41 -0.2
261,082 + EX28DRAFT_2952 0.43 -0.2
261,106 + EX28DRAFT_2952 0.47 -1.1
261,108 + EX28DRAFT_2952 0.47 -0.8
261,203 + EX28DRAFT_2952 0.60 -0.1
261,332 - EX28DRAFT_2952 0.77 -1.6
261,373 + EX28DRAFT_2952 0.83 -0.2
261,446 + -1.3
261,449 - -0.3
261,518 - -0.1
261,544 + -0.1
261,588 - -0.1
261,770 + EX28DRAFT_2953 0.11 +0.3
261,771 - EX28DRAFT_2953 0.11 -0.3
261,771 - EX28DRAFT_2953 0.11 +0.1
261,784 + EX28DRAFT_2953 0.12 +0.4
261,784 + EX28DRAFT_2953 0.12 -0.2
261,784 + EX28DRAFT_2953 0.12 +0.1
261,785 - EX28DRAFT_2953 0.12 -1.0
261,823 + EX28DRAFT_2953 0.15 +0.5
261,823 + EX28DRAFT_2953 0.15 -0.2
261,825 + EX28DRAFT_2953 0.15 +0.3
261,825 + EX28DRAFT_2953 0.15 +0.9
261,825 + EX28DRAFT_2953 0.15 +0.4
261,826 - EX28DRAFT_2953 0.15 +0.2
261,826 - EX28DRAFT_2953 0.15 -0.3
261,826 - EX28DRAFT_2953 0.15 -1.2
261,977 - EX28DRAFT_2953 0.25 -1.0
262,039 + EX28DRAFT_2953 0.30 -0.0
262,040 - EX28DRAFT_2953 0.30 +0.8
262,126 + EX28DRAFT_2953 0.36 -0.7
262,208 - EX28DRAFT_2953 0.41 -0.9
262,210 - EX28DRAFT_2953 0.42 +0.8
262,240 + EX28DRAFT_2953 0.44 +0.2
262,408 + EX28DRAFT_2953 0.55 +0.4
262,438 + EX28DRAFT_2953 0.58 -0.8
262,450 + EX28DRAFT_2953 0.58 +0.8
262,450 + EX28DRAFT_2953 0.58 -0.3
262,451 - EX28DRAFT_2953 0.58 -0.7

Or see this region's nucleotide sequence