Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2872 and EX28DRAFT_2873 overlap by 4 nucleotides EX28DRAFT_2873 and EX28DRAFT_2874 are separated by 55 nucleotides EX28DRAFT_2874 and EX28DRAFT_2875 are separated by 218 nucleotides EX28DRAFT_2875 and EX28DRAFT_2876 are separated by 69 nucleotides
EX28DRAFT_2872: EX28DRAFT_2872 - Pseudouridylate synthases, 23S RNA-specific, at 179,364 to 180,140
_2872
EX28DRAFT_2873: EX28DRAFT_2873 - Uncharacterized protein conserved in bacteria, at 180,137 to 180,466
_2873
EX28DRAFT_2874: EX28DRAFT_2874 - RNA, at 180,522 to 180,878
_2874
EX28DRAFT_2875: EX28DRAFT_2875 - Syd protein (SUKH-2), at 181,097 to 181,642
_2875
EX28DRAFT_2876: EX28DRAFT_2876 - 7-cyano-7-deazaguanine reductase, at 181,712 to 182,554
_2876
Position (kb) 181
182 Strain fitness (log2 ratio) -1
0
1 at 180.302 kb on + strand, within EX28DRAFT_2873 at 180.466 kb on + strand at 180.467 kb on - strand at 180.469 kb on + strand at 180.503 kb on + strand at 180.503 kb on + strand at 180.504 kb on - strand at 180.543 kb on - strand at 180.893 kb on + strand at 180.893 kb on + strand at 180.893 kb on + strand at 180.894 kb on - strand at 180.919 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 181.063 kb on - strand at 181.099 kb on - strand at 181.213 kb on + strand, within EX28DRAFT_2875 at 181.264 kb on + strand, within EX28DRAFT_2875 at 181.355 kb on - strand, within EX28DRAFT_2875 at 181.401 kb on + strand, within EX28DRAFT_2875 at 181.495 kb on + strand, within EX28DRAFT_2875 at 181.501 kb on - strand, within EX28DRAFT_2875 at 181.520 kb on - strand, within EX28DRAFT_2875 at 181.535 kb on + strand, within EX28DRAFT_2875 at 181.612 kb on + strand at 181.683 kb on + strand at 181.683 kb on + strand at 181.684 kb on - strand at 181.689 kb on + strand at 181.689 kb on + strand at 181.689 kb on + strand at 181.690 kb on - strand at 181.705 kb on - strand at 181.887 kb on - strand, within EX28DRAFT_2876 at 181.887 kb on - strand, within EX28DRAFT_2876 at 181.887 kb on - strand, within EX28DRAFT_2876 at 181.952 kb on + strand, within EX28DRAFT_2876 at 181.953 kb on - strand, within EX28DRAFT_2876 at 181.987 kb on + strand, within EX28DRAFT_2876 at 181.988 kb on - strand, within EX28DRAFT_2876 at 182.065 kb on - strand, within EX28DRAFT_2876 at 182.187 kb on - strand, within EX28DRAFT_2876 at 182.411 kb on - strand, within EX28DRAFT_2876 at 182.469 kb on - strand, within EX28DRAFT_2876 at 182.555 kb on + strand at 182.558 kb on - strand at 182.561 kb on + strand at 182.562 kb on - strand at 182.573 kb on - strand at 182.629 kb on - strand at 182.629 kb on - strand at 182.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 180,302 + EX28DRAFT_2873 0.50 -0.6 180,466 + -0.2 180,467 - -0.6 180,469 + -0.5 180,503 + +0.4 180,503 + +0.6 180,504 - -0.2 180,543 - +0.3 180,893 + +0.3 180,893 + -0.2 180,893 + -0.0 180,894 - +0.0 180,919 - -0.0 180,952 - -0.0 180,952 - +0.5 181,063 - -0.3 181,099 - -0.3 181,213 + EX28DRAFT_2875 0.21 -0.2 181,264 + EX28DRAFT_2875 0.31 -0.7 181,355 - EX28DRAFT_2875 0.47 -1.0 181,401 + EX28DRAFT_2875 0.56 -0.2 181,495 + EX28DRAFT_2875 0.73 -1.4 181,501 - EX28DRAFT_2875 0.74 +0.6 181,520 - EX28DRAFT_2875 0.77 -0.8 181,535 + EX28DRAFT_2875 0.80 -0.1 181,612 + +0.5 181,683 + -0.5 181,683 + -1.0 181,684 - +0.3 181,689 + +1.3 181,689 + -0.2 181,689 + -0.5 181,690 - -0.2 181,705 - +0.2 181,887 - EX28DRAFT_2876 0.21 -0.3 181,887 - EX28DRAFT_2876 0.21 -0.3 181,887 - EX28DRAFT_2876 0.21 -0.6 181,952 + EX28DRAFT_2876 0.28 -0.5 181,953 - EX28DRAFT_2876 0.29 +0.8 181,987 + EX28DRAFT_2876 0.33 +0.6 181,988 - EX28DRAFT_2876 0.33 -0.2 182,065 - EX28DRAFT_2876 0.42 +0.1 182,187 - EX28DRAFT_2876 0.56 -0.5 182,411 - EX28DRAFT_2876 0.83 +0.4 182,469 - EX28DRAFT_2876 0.90 -0.0 182,555 + -0.3 182,558 - +0.3 182,561 + -0.7 182,562 - +0.8 182,573 - +0.1 182,629 - -0.2 182,629 - -0.1 182,629 - -0.1
Or see this region's nucleotide sequence