Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2814 and EX28DRAFT_2815 overlap by 4 nucleotides EX28DRAFT_2815 and EX28DRAFT_2816 are separated by 69 nucleotides EX28DRAFT_2816 and EX28DRAFT_2817 are separated by 211 nucleotides EX28DRAFT_2817 and EX28DRAFT_2818 are separated by 3 nucleotides
EX28DRAFT_2814: EX28DRAFT_2814 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 117,647 to 119,461
_2814
EX28DRAFT_2815: EX28DRAFT_2815 - Fe-S-cluster-containing hydrogenase components 2, at 119,458 to 120,066
_2815
EX28DRAFT_2816: EX28DRAFT_2816 - Transcriptional repressor of hyc and hyp operons, at 120,136 to 120,600
_2816
EX28DRAFT_2817: EX28DRAFT_2817 - hydrogenase nickel insertion protein HypA, at 120,812 to 121,162
_2817
EX28DRAFT_2818: EX28DRAFT_2818 - hydrogenase accessory protein HypB, at 121,166 to 122,029
_2818
Position (kb)
120
121 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 119.192 kb on - strand, within EX28DRAFT_2814 at 120.085 kb on + strand at 120.086 kb on - strand at 120.212 kb on + strand, within EX28DRAFT_2816 at 120.224 kb on + strand, within EX28DRAFT_2816 at 120.225 kb on - strand, within EX28DRAFT_2816 at 120.249 kb on - strand, within EX28DRAFT_2816 at 120.330 kb on + strand, within EX28DRAFT_2816 at 120.330 kb on + strand, within EX28DRAFT_2816 at 120.497 kb on - strand, within EX28DRAFT_2816 at 120.567 kb on - strand at 120.595 kb on - strand at 120.600 kb on + strand at 120.601 kb on - strand at 120.601 kb on - strand at 121.046 kb on + strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.165 kb on + strand at 121.166 kb on - strand at 121.166 kb on - strand at 121.166 kb on - strand at 121.166 kb on - strand at 121.171 kb on + strand at 121.172 kb on - strand at 121.202 kb on + strand at 121.202 kb on + strand at 121.202 kb on + strand at 121.202 kb on + strand at 121.202 kb on + strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.204 kb on + strand at 121.204 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.207 kb on - strand at 121.207 kb on - strand at 121.207 kb on - strand at 121.207 kb on - strand at 121.207 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 119,192 - EX28DRAFT_2814 0.85 -0.3 120,085 + +0.2 120,086 - +0.0 120,212 + EX28DRAFT_2816 0.16 -0.7 120,224 + EX28DRAFT_2816 0.19 -1.4 120,225 - EX28DRAFT_2816 0.19 -0.1 120,249 - EX28DRAFT_2816 0.24 +0.1 120,330 + EX28DRAFT_2816 0.42 -1.5 120,330 + EX28DRAFT_2816 0.42 -0.6 120,497 - EX28DRAFT_2816 0.78 -0.7 120,567 - +0.3 120,595 - -0.4 120,600 + +0.2 120,601 - +0.4 120,601 - -0.0 121,046 + EX28DRAFT_2817 0.67 -0.4 121,047 - EX28DRAFT_2817 0.67 +0.3 121,047 - EX28DRAFT_2817 0.67 +0.8 121,047 - EX28DRAFT_2817 0.67 -0.2 121,047 - EX28DRAFT_2817 0.67 +0.8 121,047 - EX28DRAFT_2817 0.67 +0.6 121,047 - EX28DRAFT_2817 0.67 +0.4 121,165 + -0.2 121,166 - -0.2 121,166 - +0.0 121,166 - -0.2 121,166 - +0.1 121,171 + -0.0 121,172 - -0.4 121,202 + -0.7 121,202 + +0.1 121,202 + +0.4 121,202 + +0.5 121,202 + +0.2 121,203 - -0.4 121,203 - +0.2 121,203 - -1.4 121,203 - +0.7 121,203 - +0.8 121,203 - +0.0 121,203 - -0.7 121,203 - +1.4 121,204 + -3.6 121,204 + -0.3 121,206 + -0.1 121,206 + +0.8 121,206 + -0.6 121,206 + +1.1 121,206 + -0.4 121,206 + -0.1 121,206 + -1.0 121,206 + +1.0 121,206 + +0.4 121,207 - +0.3 121,207 - -0.0 121,207 - +0.4 121,207 - -0.2 121,207 - +0.1
Or see this region's nucleotide sequence