Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2792

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2790 and EX28DRAFT_2791 are separated by 252 nucleotidesEX28DRAFT_2791 and EX28DRAFT_2792 overlap by 4 nucleotidesEX28DRAFT_2792 and EX28DRAFT_2793 are separated by 12 nucleotidesEX28DRAFT_2793 and EX28DRAFT_2794 are separated by 14 nucleotides EX28DRAFT_2790: EX28DRAFT_2790 - lytic murein transglycosylase B, at 93,698 to 94,798 _2790 EX28DRAFT_2791: EX28DRAFT_2791 - PTS system, glucitol/sorbitol-specific, IIC component, at 95,051 to 95,614 _2791 EX28DRAFT_2792: EX28DRAFT_2792 - PTS system, glucitol/sorbitol-specific, IIBC component, at 95,611 to 96,570 _2792 EX28DRAFT_2793: EX28DRAFT_2793 - Phosphotransferase system sorbitol-specific component IIA, at 96,583 to 96,945 _2793 EX28DRAFT_2794: EX28DRAFT_2794 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 96,960 to 97,739 _2794 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1at 94.660 kb on + strand, within EX28DRAFT_2790at 94.660 kb on + strand, within EX28DRAFT_2790at 94.661 kb on - strand, within EX28DRAFT_2790at 94.661 kb on - strand, within EX28DRAFT_2790at 94.738 kb on + strandat 94.739 kb on - strandat 94.741 kb on + strandat 94.741 kb on + strandat 94.742 kb on - strandat 94.833 kb on - strandat 94.835 kb on - strandat 94.835 kb on - strandat 95.334 kb on - strand, within EX28DRAFT_2791at 95.346 kb on - strand, within EX28DRAFT_2791at 95.346 kb on - strand, within EX28DRAFT_2791at 95.363 kb on + strand, within EX28DRAFT_2791at 95.486 kb on + strand, within EX28DRAFT_2791at 95.486 kb on + strand, within EX28DRAFT_2791at 95.487 kb on - strand, within EX28DRAFT_2791at 95.487 kb on - strand, within EX28DRAFT_2791at 95.487 kb on - strand, within EX28DRAFT_2791at 95.696 kb on - strandat 95.696 kb on - strandat 95.845 kb on - strand, within EX28DRAFT_2792at 95.845 kb on - strand, within EX28DRAFT_2792at 95.878 kb on - strand, within EX28DRAFT_2792at 95.932 kb on + strand, within EX28DRAFT_2792at 95.932 kb on + strand, within EX28DRAFT_2792at 95.932 kb on + strand, within EX28DRAFT_2792at 95.933 kb on - strand, within EX28DRAFT_2792at 95.933 kb on - strand, within EX28DRAFT_2792at 95.933 kb on - strand, within EX28DRAFT_2792at 96.011 kb on - strand, within EX28DRAFT_2792at 96.150 kb on + strand, within EX28DRAFT_2792at 96.406 kb on - strand, within EX28DRAFT_2792at 96.558 kb on + strandat 96.568 kb on + strandat 96.595 kb on + strandat 96.943 kb on + strandat 96.943 kb on + strandat 97.000 kb on + strandat 97.000 kb on + strandat 97.218 kb on + strand, within EX28DRAFT_2794at 97.409 kb on + strand, within EX28DRAFT_2794at 97.409 kb on + strand, within EX28DRAFT_2794at 97.409 kb on + strand, within EX28DRAFT_2794at 97.410 kb on - strand, within EX28DRAFT_2794at 97.558 kb on - strand, within EX28DRAFT_2794

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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94,660 + EX28DRAFT_2790 0.87 +0.0
94,660 + EX28DRAFT_2790 0.87 -0.5
94,661 - EX28DRAFT_2790 0.87 +0.5
94,661 - EX28DRAFT_2790 0.87 +0.0
94,738 + +0.1
94,739 - +0.2
94,741 + -0.7
94,741 + -0.2
94,742 - +1.7
94,833 - -0.0
94,835 - -0.4
94,835 - -1.2
95,334 - EX28DRAFT_2791 0.50 -0.4
95,346 - EX28DRAFT_2791 0.52 -0.0
95,346 - EX28DRAFT_2791 0.52 +0.3
95,363 + EX28DRAFT_2791 0.55 +0.1
95,486 + EX28DRAFT_2791 0.77 -0.2
95,486 + EX28DRAFT_2791 0.77 +0.0
95,487 - EX28DRAFT_2791 0.77 -0.0
95,487 - EX28DRAFT_2791 0.77 -0.2
95,487 - EX28DRAFT_2791 0.77 -1.3
95,696 - -1.2
95,696 - -0.0
95,845 - EX28DRAFT_2792 0.24 +0.2
95,845 - EX28DRAFT_2792 0.24 -0.3
95,878 - EX28DRAFT_2792 0.28 -0.3
95,932 + EX28DRAFT_2792 0.33 -0.4
95,932 + EX28DRAFT_2792 0.33 -2.1
95,932 + EX28DRAFT_2792 0.33 -1.2
95,933 - EX28DRAFT_2792 0.34 +0.7
95,933 - EX28DRAFT_2792 0.34 -0.2
95,933 - EX28DRAFT_2792 0.34 +0.0
96,011 - EX28DRAFT_2792 0.42 -0.7
96,150 + EX28DRAFT_2792 0.56 +0.0
96,406 - EX28DRAFT_2792 0.83 +1.0
96,558 + -0.5
96,568 + -0.6
96,595 + +0.2
96,943 + +0.1
96,943 + -0.4
97,000 + +0.9
97,000 + +0.3
97,218 + EX28DRAFT_2794 0.33 +0.7
97,409 + EX28DRAFT_2794 0.58 +0.8
97,409 + EX28DRAFT_2794 0.58 -0.1
97,409 + EX28DRAFT_2794 0.58 +0.6
97,410 - EX28DRAFT_2794 0.58 -0.3
97,558 - EX28DRAFT_2794 0.77 +0.0

Or see this region's nucleotide sequence