Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2741 and EX28DRAFT_2742 are separated by 97 nucleotides EX28DRAFT_2742 and EX28DRAFT_2743 overlap by 7 nucleotides EX28DRAFT_2743 and EX28DRAFT_2744 are separated by 102 nucleotides
EX28DRAFT_2741: EX28DRAFT_2741 - Transcriptional regulator, at 50,982 to 51,869
_2741
EX28DRAFT_2742: EX28DRAFT_2742 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 51,967 to 52,569
_2742
EX28DRAFT_2743: EX28DRAFT_2743 - Methyltransferase domain, at 52,563 to 53,297
_2743
EX28DRAFT_2744: EX28DRAFT_2744 - Cytosine deaminase and related metal-dependent hydrolases, at 53,400 to 54,779
_2744
Position (kb) 52
53
54 Strain fitness (log2 ratio) -1
0
1
2 at 51.676 kb on + strand, within EX28DRAFT_2741 at 51.763 kb on + strand, within EX28DRAFT_2741 at 51.764 kb on - strand, within EX28DRAFT_2741 at 51.839 kb on + strand at 51.864 kb on - strand at 51.954 kb on + strand at 51.954 kb on + strand at 51.954 kb on + strand at 51.955 kb on - strand at 51.955 kb on - strand at 51.966 kb on + strand at 51.981 kb on + strand at 52.165 kb on + strand, within EX28DRAFT_2742 at 52.166 kb on - strand, within EX28DRAFT_2742 at 52.264 kb on + strand, within EX28DRAFT_2742 at 52.285 kb on - strand, within EX28DRAFT_2742 at 52.350 kb on - strand, within EX28DRAFT_2742 at 52.456 kb on + strand, within EX28DRAFT_2742 at 52.553 kb on - strand at 52.553 kb on - strand at 52.554 kb on + strand at 52.787 kb on - strand, within EX28DRAFT_2743 at 52.855 kb on + strand, within EX28DRAFT_2743 at 52.855 kb on + strand, within EX28DRAFT_2743 at 52.855 kb on + strand, within EX28DRAFT_2743 at 52.855 kb on + strand, within EX28DRAFT_2743 at 52.856 kb on - strand, within EX28DRAFT_2743 at 52.946 kb on - strand, within EX28DRAFT_2743 at 52.967 kb on - strand, within EX28DRAFT_2743 at 52.967 kb on - strand, within EX28DRAFT_2743 at 52.967 kb on - strand, within EX28DRAFT_2743 at 53.312 kb on + strand at 53.330 kb on + strand at 53.330 kb on + strand at 53.332 kb on + strand at 53.332 kb on + strand at 53.332 kb on + strand at 53.333 kb on - strand at 53.333 kb on - strand at 53.333 kb on - strand at 53.912 kb on + strand, within EX28DRAFT_2744 at 53.913 kb on - strand, within EX28DRAFT_2744 at 53.914 kb on + strand, within EX28DRAFT_2744 at 53.914 kb on + strand, within EX28DRAFT_2744 at 53.914 kb on + strand, within EX28DRAFT_2744 at 53.914 kb on + strand, within EX28DRAFT_2744 at 53.915 kb on - strand, within EX28DRAFT_2744 at 53.915 kb on - strand, within EX28DRAFT_2744 at 53.915 kb on - strand, within EX28DRAFT_2744 at 53.977 kb on + strand, within EX28DRAFT_2744 at 53.977 kb on + strand, within EX28DRAFT_2744 at 53.978 kb on - strand, within EX28DRAFT_2744 at 54.058 kb on + strand, within EX28DRAFT_2744 at 54.161 kb on + strand, within EX28DRAFT_2744
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 51,676 + EX28DRAFT_2741 0.78 -0.6 51,763 + EX28DRAFT_2741 0.88 -0.2 51,764 - EX28DRAFT_2741 0.88 +2.4 51,839 + +0.7 51,864 - -0.1 51,954 + +1.0 51,954 + +0.5 51,954 + -0.1 51,955 - -1.2 51,955 - -0.1 51,966 + -0.0 51,981 + +1.2 52,165 + EX28DRAFT_2742 0.33 +0.2 52,166 - EX28DRAFT_2742 0.33 -1.0 52,264 + EX28DRAFT_2742 0.49 +0.6 52,285 - EX28DRAFT_2742 0.53 +0.2 52,350 - EX28DRAFT_2742 0.64 -0.8 52,456 + EX28DRAFT_2742 0.81 -0.2 52,553 - +1.3 52,553 - -0.0 52,554 + -0.1 52,787 - EX28DRAFT_2743 0.30 +0.1 52,855 + EX28DRAFT_2743 0.40 +0.1 52,855 + EX28DRAFT_2743 0.40 +0.1 52,855 + EX28DRAFT_2743 0.40 +0.5 52,855 + EX28DRAFT_2743 0.40 +1.9 52,856 - EX28DRAFT_2743 0.40 +0.4 52,946 - EX28DRAFT_2743 0.52 -0.1 52,967 - EX28DRAFT_2743 0.55 +0.5 52,967 - EX28DRAFT_2743 0.55 +0.4 52,967 - EX28DRAFT_2743 0.55 -0.4 53,312 + -0.8 53,330 + -1.2 53,330 + -0.5 53,332 + -0.3 53,332 + -1.4 53,332 + +0.2 53,333 - -0.9 53,333 - -0.8 53,333 - -1.2 53,912 + EX28DRAFT_2744 0.37 +0.5 53,913 - EX28DRAFT_2744 0.37 -0.4 53,914 + EX28DRAFT_2744 0.37 -0.0 53,914 + EX28DRAFT_2744 0.37 -0.7 53,914 + EX28DRAFT_2744 0.37 -0.0 53,914 + EX28DRAFT_2744 0.37 +0.2 53,915 - EX28DRAFT_2744 0.37 +0.3 53,915 - EX28DRAFT_2744 0.37 -0.7 53,915 - EX28DRAFT_2744 0.37 -0.5 53,977 + EX28DRAFT_2744 0.42 -0.2 53,977 + EX28DRAFT_2744 0.42 +0.1 53,978 - EX28DRAFT_2744 0.42 -0.0 54,058 + EX28DRAFT_2744 0.48 +0.6 54,161 + EX28DRAFT_2744 0.55 +1.1
Or see this region's nucleotide sequence