Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2733

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2732 and EX28DRAFT_2733 overlap by 4 nucleotidesEX28DRAFT_2733 and EX28DRAFT_2734 overlap by 20 nucleotides EX28DRAFT_2732: EX28DRAFT_2732 - type I secretion outer membrane protein, TolC family, at 42,892 to 44,295 _2732 EX28DRAFT_2733: EX28DRAFT_2733 - type I secretion system ATPase, LssB family, at 44,292 to 46,490 _2733 EX28DRAFT_2734: EX28DRAFT_2734 - Multidrug resistance efflux pump, at 46,471 to 47,670 _2734 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -2 -1 0 1at 43.366 kb on - strand, within EX28DRAFT_2732at 43.810 kb on + strand, within EX28DRAFT_2732at 43.811 kb on - strand, within EX28DRAFT_2732at 44.155 kb on + strandat 44.155 kb on + strandat 44.221 kb on + strandat 44.221 kb on + strandat 44.221 kb on + strandat 44.221 kb on + strandat 44.222 kb on - strandat 44.223 kb on + strandat 44.224 kb on - strandat 44.259 kb on + strandat 44.501 kb on + strandat 44.733 kb on + strand, within EX28DRAFT_2733at 44.733 kb on + strand, within EX28DRAFT_2733at 44.733 kb on + strand, within EX28DRAFT_2733at 44.734 kb on - strand, within EX28DRAFT_2733at 44.734 kb on - strand, within EX28DRAFT_2733at 44.734 kb on - strand, within EX28DRAFT_2733at 44.735 kb on + strand, within EX28DRAFT_2733at 44.736 kb on - strand, within EX28DRAFT_2733at 44.793 kb on + strand, within EX28DRAFT_2733at 44.823 kb on - strand, within EX28DRAFT_2733at 44.907 kb on + strand, within EX28DRAFT_2733at 44.978 kb on + strand, within EX28DRAFT_2733at 44.979 kb on - strand, within EX28DRAFT_2733at 45.083 kb on + strand, within EX28DRAFT_2733at 45.084 kb on - strand, within EX28DRAFT_2733at 45.405 kb on + strand, within EX28DRAFT_2733at 45.405 kb on + strand, within EX28DRAFT_2733at 45.405 kb on + strand, within EX28DRAFT_2733at 45.405 kb on + strand, within EX28DRAFT_2733at 45.405 kb on + strand, within EX28DRAFT_2733at 45.405 kb on + strand, within EX28DRAFT_2733at 45.405 kb on + strand, within EX28DRAFT_2733at 45.406 kb on - strand, within EX28DRAFT_2733at 45.406 kb on - strand, within EX28DRAFT_2733at 45.406 kb on - strand, within EX28DRAFT_2733at 45.496 kb on - strand, within EX28DRAFT_2733at 45.738 kb on + strand, within EX28DRAFT_2733at 45.738 kb on + strand, within EX28DRAFT_2733at 45.738 kb on + strand, within EX28DRAFT_2733at 46.676 kb on + strand, within EX28DRAFT_2734at 46.676 kb on + strand, within EX28DRAFT_2734at 46.979 kb on + strand, within EX28DRAFT_2734at 46.980 kb on - strand, within EX28DRAFT_2734at 46.980 kb on - strand, within EX28DRAFT_2734at 47.102 kb on + strand, within EX28DRAFT_2734at 47.102 kb on + strand, within EX28DRAFT_2734at 47.103 kb on - strand, within EX28DRAFT_2734at 47.117 kb on - strand, within EX28DRAFT_2734at 47.117 kb on - strand, within EX28DRAFT_2734at 47.163 kb on + strand, within EX28DRAFT_2734at 47.465 kb on + strand, within EX28DRAFT_2734

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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43,366 - EX28DRAFT_2732 0.34 -0.3
43,810 + EX28DRAFT_2732 0.65 -0.0
43,811 - EX28DRAFT_2732 0.65 -1.6
44,155 + +0.1
44,155 + -0.0
44,221 + +0.2
44,221 + +0.2
44,221 + -0.3
44,221 + +0.5
44,222 - -0.7
44,223 + +1.2
44,224 - +1.1
44,259 + -1.3
44,501 + +0.3
44,733 + EX28DRAFT_2733 0.20 +0.6
44,733 + EX28DRAFT_2733 0.20 +0.3
44,733 + EX28DRAFT_2733 0.20 +0.4
44,734 - EX28DRAFT_2733 0.20 +0.2
44,734 - EX28DRAFT_2733 0.20 +0.1
44,734 - EX28DRAFT_2733 0.20 +0.7
44,735 + EX28DRAFT_2733 0.20 -0.6
44,736 - EX28DRAFT_2733 0.20 +1.2
44,793 + EX28DRAFT_2733 0.23 +1.4
44,823 - EX28DRAFT_2733 0.24 +0.2
44,907 + EX28DRAFT_2733 0.28 +1.5
44,978 + EX28DRAFT_2733 0.31 -0.2
44,979 - EX28DRAFT_2733 0.31 -0.0
45,083 + EX28DRAFT_2733 0.36 +0.5
45,084 - EX28DRAFT_2733 0.36 +0.7
45,405 + EX28DRAFT_2733 0.51 +0.1
45,405 + EX28DRAFT_2733 0.51 +0.2
45,405 + EX28DRAFT_2733 0.51 +0.7
45,405 + EX28DRAFT_2733 0.51 -0.3
45,405 + EX28DRAFT_2733 0.51 +0.0
45,405 + EX28DRAFT_2733 0.51 +0.5
45,405 + EX28DRAFT_2733 0.51 +0.1
45,406 - EX28DRAFT_2733 0.51 -0.9
45,406 - EX28DRAFT_2733 0.51 +0.3
45,406 - EX28DRAFT_2733 0.51 -0.1
45,496 - EX28DRAFT_2733 0.55 +0.0
45,738 + EX28DRAFT_2733 0.66 +0.2
45,738 + EX28DRAFT_2733 0.66 -0.6
45,738 + EX28DRAFT_2733 0.66 +0.5
46,676 + EX28DRAFT_2734 0.17 +0.1
46,676 + EX28DRAFT_2734 0.17 +0.4
46,979 + EX28DRAFT_2734 0.42 -1.7
46,980 - EX28DRAFT_2734 0.42 -0.1
46,980 - EX28DRAFT_2734 0.42 +0.3
47,102 + EX28DRAFT_2734 0.53 +0.0
47,102 + EX28DRAFT_2734 0.53 +0.1
47,103 - EX28DRAFT_2734 0.53 -0.3
47,117 - EX28DRAFT_2734 0.54 -1.9
47,117 - EX28DRAFT_2734 0.54 +0.2
47,163 + EX28DRAFT_2734 0.58 +0.2
47,465 + EX28DRAFT_2734 0.83 +0.6

Or see this region's nucleotide sequence