Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2693

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2692 and EX28DRAFT_2693 are separated by 446 nucleotidesEX28DRAFT_2693 and EX28DRAFT_2694 are separated by 129 nucleotidesEX28DRAFT_2694 and EX28DRAFT_2695 overlap by 4 nucleotides EX28DRAFT_2692: EX28DRAFT_2692 - 16S, at 1 to 51 _2692 EX28DRAFT_2693: EX28DRAFT_2693 - ATP-dependent chaperone ClpB, at 498 to 3,071 _2693 EX28DRAFT_2694: EX28DRAFT_2694 - YfiH family protein, at 3,201 to 3,932 _2694 EX28DRAFT_2695: EX28DRAFT_2695 - pseudouridine synthase, RluA family, at 3,929 to 4,909 _2695 Position (kb) 0 1 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.351 kb on + strandat 0.351 kb on + strandat 0.393 kb on - strandat 0.395 kb on - strandat 0.500 kb on - strandat 0.621 kb on + strandat 0.637 kb on + strandat 0.638 kb on - strandat 0.725 kb on - strandat 0.753 kb on - strandat 0.753 kb on - strandat 0.803 kb on + strand, within EX28DRAFT_2693at 0.803 kb on + strand, within EX28DRAFT_2693at 0.831 kb on - strand, within EX28DRAFT_2693at 0.864 kb on - strand, within EX28DRAFT_2693at 0.938 kb on + strand, within EX28DRAFT_2693at 1.106 kb on - strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.110 kb on + strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.111 kb on - strand, within EX28DRAFT_2693at 1.114 kb on + strand, within EX28DRAFT_2693at 1.178 kb on + strand, within EX28DRAFT_2693at 1.183 kb on - strand, within EX28DRAFT_2693at 1.183 kb on - strand, within EX28DRAFT_2693at 1.208 kb on + strand, within EX28DRAFT_2693at 1.209 kb on - strand, within EX28DRAFT_2693at 1.209 kb on - strand, within EX28DRAFT_2693at 1.241 kb on + strand, within EX28DRAFT_2693at 1.322 kb on + strand, within EX28DRAFT_2693at 1.485 kb on - strand, within EX28DRAFT_2693at 1.487 kb on + strand, within EX28DRAFT_2693at 1.487 kb on + strand, within EX28DRAFT_2693at 1.488 kb on - strand, within EX28DRAFT_2693at 1.488 kb on - strand, within EX28DRAFT_2693at 1.528 kb on - strand, within EX28DRAFT_2693at 1.761 kb on - strand, within EX28DRAFT_2693at 1.865 kb on + strand, within EX28DRAFT_2693at 1.931 kb on + strand, within EX28DRAFT_2693at 1.933 kb on + strand, within EX28DRAFT_2693at 1.933 kb on + strand, within EX28DRAFT_2693at 1.934 kb on - strand, within EX28DRAFT_2693at 2.036 kb on + strand, within EX28DRAFT_2693at 2.036 kb on + strand, within EX28DRAFT_2693at 2.036 kb on + strand, within EX28DRAFT_2693at 2.108 kb on - strand, within EX28DRAFT_2693at 2.116 kb on + strand, within EX28DRAFT_2693at 2.210 kb on + strand, within EX28DRAFT_2693at 2.321 kb on - strand, within EX28DRAFT_2693at 2.406 kb on - strand, within EX28DRAFT_2693at 2.494 kb on - strand, within EX28DRAFT_2693at 2.505 kb on - strand, within EX28DRAFT_2693at 2.580 kb on - strand, within EX28DRAFT_2693at 2.757 kb on - strand, within EX28DRAFT_2693at 2.757 kb on - strand, within EX28DRAFT_2693at 2.907 kb on - strandat 2.923 kb on - strandat 2.925 kb on + strandat 2.926 kb on - strandat 2.970 kb on + strandat 2.970 kb on + strandat 2.988 kb on - strandat 3.051 kb on - strandat 3.051 kb on - strandat 3.053 kb on + strandat 3.071 kb on + strandat 3.072 kb on - strandat 3.154 kb on + strandat 3.204 kb on + strandat 3.204 kb on + strandat 3.353 kb on + strand, within EX28DRAFT_2694at 3.365 kb on - strand, within EX28DRAFT_2694at 3.488 kb on + strand, within EX28DRAFT_2694at 3.489 kb on - strand, within EX28DRAFT_2694at 3.489 kb on - strand, within EX28DRAFT_2694at 3.650 kb on + strand, within EX28DRAFT_2694at 3.654 kb on - strand, within EX28DRAFT_2694at 3.658 kb on + strand, within EX28DRAFT_2694at 3.678 kb on - strand, within EX28DRAFT_2694at 3.685 kb on + strand, within EX28DRAFT_2694at 3.685 kb on + strand, within EX28DRAFT_2694at 3.879 kb on - strandat 3.952 kb on + strandat 3.952 kb on + strandat 3.953 kb on - strandat 3.986 kb on - strandat 3.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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351 + +1.3
351 + +0.3
393 - +0.2
395 - -0.1
500 - +0.4
621 + +0.4
637 + +0.7
638 - -0.2
725 - -0.2
753 - -0.9
753 - -0.0
803 + EX28DRAFT_2693 0.12 +0.3
803 + EX28DRAFT_2693 0.12 -0.1
831 - EX28DRAFT_2693 0.13 +0.6
864 - EX28DRAFT_2693 0.14 +0.5
938 + EX28DRAFT_2693 0.17 +0.3
1,106 - EX28DRAFT_2693 0.24 +0.2
1,110 + EX28DRAFT_2693 0.24 +1.1
1,110 + EX28DRAFT_2693 0.24 -0.2
1,110 + EX28DRAFT_2693 0.24 -0.4
1,110 + EX28DRAFT_2693 0.24 +0.2
1,110 + EX28DRAFT_2693 0.24 +0.2
1,110 + EX28DRAFT_2693 0.24 -1.7
1,110 + EX28DRAFT_2693 0.24 -1.1
1,110 + EX28DRAFT_2693 0.24 +0.1
1,110 + EX28DRAFT_2693 0.24 -0.4
1,110 + EX28DRAFT_2693 0.24 -0.4
1,111 - EX28DRAFT_2693 0.24 +0.4
1,111 - EX28DRAFT_2693 0.24 +0.7
1,111 - EX28DRAFT_2693 0.24 -0.5
1,111 - EX28DRAFT_2693 0.24 +2.0
1,111 - EX28DRAFT_2693 0.24 +0.8
1,111 - EX28DRAFT_2693 0.24 -0.2
1,111 - EX28DRAFT_2693 0.24 +0.2
1,111 - EX28DRAFT_2693 0.24 +0.4
1,111 - EX28DRAFT_2693 0.24 -1.3
1,114 + EX28DRAFT_2693 0.24 -0.2
1,178 + EX28DRAFT_2693 0.26 +0.5
1,183 - EX28DRAFT_2693 0.27 -1.2
1,183 - EX28DRAFT_2693 0.27 +0.5
1,208 + EX28DRAFT_2693 0.28 +0.3
1,209 - EX28DRAFT_2693 0.28 +0.5
1,209 - EX28DRAFT_2693 0.28 +0.1
1,241 + EX28DRAFT_2693 0.29 -0.4
1,322 + EX28DRAFT_2693 0.32 +0.6
1,485 - EX28DRAFT_2693 0.38 -0.0
1,487 + EX28DRAFT_2693 0.38 +1.5
1,487 + EX28DRAFT_2693 0.38 +0.8
1,488 - EX28DRAFT_2693 0.38 -0.2
1,488 - EX28DRAFT_2693 0.38 -0.1
1,528 - EX28DRAFT_2693 0.40 +0.4
1,761 - EX28DRAFT_2693 0.49 +0.0
1,865 + EX28DRAFT_2693 0.53 -0.5
1,931 + EX28DRAFT_2693 0.56 +1.4
1,933 + EX28DRAFT_2693 0.56 +1.1
1,933 + EX28DRAFT_2693 0.56 -0.1
1,934 - EX28DRAFT_2693 0.56 +0.4
2,036 + EX28DRAFT_2693 0.60 +0.0
2,036 + EX28DRAFT_2693 0.60 +1.3
2,036 + EX28DRAFT_2693 0.60 -0.7
2,108 - EX28DRAFT_2693 0.63 -0.7
2,116 + EX28DRAFT_2693 0.63 +1.0
2,210 + EX28DRAFT_2693 0.67 +0.5
2,321 - EX28DRAFT_2693 0.71 -0.4
2,406 - EX28DRAFT_2693 0.74 -0.7
2,494 - EX28DRAFT_2693 0.78 +0.3
2,505 - EX28DRAFT_2693 0.78 -0.9
2,580 - EX28DRAFT_2693 0.81 +1.0
2,757 - EX28DRAFT_2693 0.88 -0.6
2,757 - EX28DRAFT_2693 0.88 -3.1
2,907 - -0.0
2,923 - +0.3
2,925 + +0.2
2,926 - -0.1
2,970 + -0.3
2,970 + +0.2
2,988 - +0.3
3,051 - +0.4
3,051 - -1.0
3,053 + +1.0
3,071 + -0.3
3,072 - -0.4
3,154 + +1.3
3,204 + +0.2
3,204 + +0.7
3,353 + EX28DRAFT_2694 0.21 +1.9
3,365 - EX28DRAFT_2694 0.22 -0.3
3,488 + EX28DRAFT_2694 0.39 +0.2
3,489 - EX28DRAFT_2694 0.39 +0.5
3,489 - EX28DRAFT_2694 0.39 -0.0
3,650 + EX28DRAFT_2694 0.61 +0.3
3,654 - EX28DRAFT_2694 0.62 +0.9
3,658 + EX28DRAFT_2694 0.62 -2.1
3,678 - EX28DRAFT_2694 0.65 +0.2
3,685 + EX28DRAFT_2694 0.66 +0.2
3,685 + EX28DRAFT_2694 0.66 +0.1
3,879 - +0.1
3,952 + +0.4
3,952 + +0.4
3,953 - -2.5
3,986 - -1.4
3,998 - +1.5

Or see this region's nucleotide sequence