Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2672

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2670 and EX28DRAFT_2671 are separated by 9 nucleotidesEX28DRAFT_2671 and EX28DRAFT_2672 are separated by 2 nucleotidesEX28DRAFT_2672 and EX28DRAFT_2673 are separated by 18 nucleotides EX28DRAFT_2670: EX28DRAFT_2670 - Gamma-glutamyltransferase, at 2,708,218 to 2,709,819 _2670 EX28DRAFT_2671: EX28DRAFT_2671 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,709,829 to 2,710,704 _2671 EX28DRAFT_2672: EX28DRAFT_2672 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,710,707 to 2,711,648 _2672 EX28DRAFT_2673: EX28DRAFT_2673 - ABC-type dipeptide transport system, periplasmic component, at 2,711,667 to 2,713,181 _2673 Position (kb) 2710 2711 2712Strain fitness (log2 ratio) -1 0 1at 2709.874 kb on + strandat 2709.879 kb on + strandat 2710.104 kb on + strand, within EX28DRAFT_2671at 2710.104 kb on + strand, within EX28DRAFT_2671at 2710.104 kb on + strand, within EX28DRAFT_2671at 2710.104 kb on + strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.154 kb on + strand, within EX28DRAFT_2671at 2710.154 kb on + strand, within EX28DRAFT_2671at 2710.154 kb on + strand, within EX28DRAFT_2671at 2710.155 kb on - strand, within EX28DRAFT_2671at 2710.155 kb on - strand, within EX28DRAFT_2671at 2710.411 kb on - strand, within EX28DRAFT_2671at 2710.411 kb on - strand, within EX28DRAFT_2671at 2710.411 kb on - strand, within EX28DRAFT_2671at 2710.447 kb on - strand, within EX28DRAFT_2671at 2710.493 kb on + strand, within EX28DRAFT_2671at 2710.494 kb on - strand, within EX28DRAFT_2671at 2710.494 kb on - strand, within EX28DRAFT_2671at 2710.738 kb on + strandat 2710.994 kb on + strand, within EX28DRAFT_2672at 2711.014 kb on + strand, within EX28DRAFT_2672at 2711.014 kb on + strand, within EX28DRAFT_2672at 2711.015 kb on - strand, within EX28DRAFT_2672at 2711.328 kb on - strand, within EX28DRAFT_2672at 2711.455 kb on + strand, within EX28DRAFT_2672at 2711.668 kb on + strandat 2711.669 kb on - strandat 2711.669 kb on - strandat 2711.768 kb on - strandat 2711.773 kb on + strandat 2711.927 kb on + strand, within EX28DRAFT_2673at 2711.927 kb on + strand, within EX28DRAFT_2673at 2711.928 kb on - strand, within EX28DRAFT_2673at 2712.082 kb on - strand, within EX28DRAFT_2673at 2712.256 kb on + strand, within EX28DRAFT_2673at 2712.257 kb on - strand, within EX28DRAFT_2673at 2712.257 kb on - strand, within EX28DRAFT_2673at 2712.257 kb on - strand, within EX28DRAFT_2673at 2712.257 kb on - strand, within EX28DRAFT_2673at 2712.535 kb on + strand, within EX28DRAFT_2673at 2712.535 kb on + strand, within EX28DRAFT_2673at 2712.536 kb on - strand, within EX28DRAFT_2673

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,709,874 + +1.6
2,709,879 + +0.6
2,710,104 + EX28DRAFT_2671 0.31 +0.0
2,710,104 + EX28DRAFT_2671 0.31 +0.6
2,710,104 + EX28DRAFT_2671 0.31 +0.6
2,710,104 + EX28DRAFT_2671 0.31 +0.3
2,710,105 - EX28DRAFT_2671 0.32 -1.4
2,710,105 - EX28DRAFT_2671 0.32 -0.2
2,710,105 - EX28DRAFT_2671 0.32 -0.0
2,710,105 - EX28DRAFT_2671 0.32 -0.2
2,710,105 - EX28DRAFT_2671 0.32 -0.4
2,710,154 + EX28DRAFT_2671 0.37 -0.0
2,710,154 + EX28DRAFT_2671 0.37 +0.5
2,710,154 + EX28DRAFT_2671 0.37 +0.1
2,710,155 - EX28DRAFT_2671 0.37 -0.6
2,710,155 - EX28DRAFT_2671 0.37 -0.1
2,710,411 - EX28DRAFT_2671 0.66 +0.3
2,710,411 - EX28DRAFT_2671 0.66 -0.2
2,710,411 - EX28DRAFT_2671 0.66 -0.8
2,710,447 - EX28DRAFT_2671 0.71 -1.5
2,710,493 + EX28DRAFT_2671 0.76 +0.4
2,710,494 - EX28DRAFT_2671 0.76 -1.1
2,710,494 - EX28DRAFT_2671 0.76 +0.7
2,710,738 + +0.1
2,710,994 + EX28DRAFT_2672 0.30 -0.0
2,711,014 + EX28DRAFT_2672 0.33 +0.3
2,711,014 + EX28DRAFT_2672 0.33 +0.3
2,711,015 - EX28DRAFT_2672 0.33 -1.4
2,711,328 - EX28DRAFT_2672 0.66 -0.1
2,711,455 + EX28DRAFT_2672 0.79 -0.4
2,711,668 + -0.2
2,711,669 - -0.2
2,711,669 - +0.1
2,711,768 - -0.5
2,711,773 + -0.4
2,711,927 + EX28DRAFT_2673 0.17 -0.5
2,711,927 + EX28DRAFT_2673 0.17 +0.3
2,711,928 - EX28DRAFT_2673 0.17 -0.1
2,712,082 - EX28DRAFT_2673 0.27 +0.7
2,712,256 + EX28DRAFT_2673 0.39 +0.1
2,712,257 - EX28DRAFT_2673 0.39 +0.2
2,712,257 - EX28DRAFT_2673 0.39 +0.2
2,712,257 - EX28DRAFT_2673 0.39 -0.3
2,712,257 - EX28DRAFT_2673 0.39 +0.1
2,712,535 + EX28DRAFT_2673 0.57 -0.0
2,712,535 + EX28DRAFT_2673 0.57 +0.2
2,712,536 - EX28DRAFT_2673 0.57 +0.0

Or see this region's nucleotide sequence