Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2631

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2629 and EX28DRAFT_2630 overlap by 8 nucleotidesEX28DRAFT_2630 and EX28DRAFT_2631 are separated by 14 nucleotidesEX28DRAFT_2631 and EX28DRAFT_2632 overlap by 4 nucleotides EX28DRAFT_2629: EX28DRAFT_2629 - nucleoside diphosphate kinase (EC 2.7.4.6), at 2,668,309 to 2,669,370 _2629 EX28DRAFT_2630: EX28DRAFT_2630 - hypothetical protein, at 2,669,363 to 2,670,073 _2630 EX28DRAFT_2631: EX28DRAFT_2631 - Protein of unknown function (DUF2817), at 2,670,088 to 2,671,146 _2631 EX28DRAFT_2632: EX28DRAFT_2632 - Major Facilitator Superfamily, at 2,671,143 to 2,672,324 _2632 Position (kb) 2670 2671 2672Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2669.270 kb on + strandat 2669.314 kb on - strandat 2669.377 kb on + strandat 2669.553 kb on + strand, within EX28DRAFT_2630at 2669.611 kb on + strand, within EX28DRAFT_2630at 2669.611 kb on + strand, within EX28DRAFT_2630at 2669.730 kb on - strand, within EX28DRAFT_2630at 2670.011 kb on - strandat 2670.030 kb on - strandat 2670.084 kb on + strandat 2670.085 kb on - strandat 2670.085 kb on - strandat 2670.097 kb on + strandat 2670.097 kb on + strandat 2670.097 kb on + strandat 2670.097 kb on + strandat 2670.098 kb on - strandat 2670.098 kb on - strandat 2670.121 kb on - strandat 2670.153 kb on - strandat 2670.200 kb on + strand, within EX28DRAFT_2631at 2670.205 kb on + strand, within EX28DRAFT_2631at 2670.206 kb on - strand, within EX28DRAFT_2631at 2670.208 kb on - strand, within EX28DRAFT_2631at 2670.208 kb on - strand, within EX28DRAFT_2631at 2670.279 kb on - strand, within EX28DRAFT_2631at 2670.334 kb on - strand, within EX28DRAFT_2631at 2670.373 kb on - strand, within EX28DRAFT_2631at 2670.405 kb on + strand, within EX28DRAFT_2631at 2670.406 kb on - strand, within EX28DRAFT_2631at 2670.546 kb on + strand, within EX28DRAFT_2631at 2670.570 kb on - strand, within EX28DRAFT_2631at 2670.570 kb on - strand, within EX28DRAFT_2631at 2670.619 kb on + strand, within EX28DRAFT_2631at 2670.665 kb on + strand, within EX28DRAFT_2631at 2670.665 kb on + strand, within EX28DRAFT_2631at 2670.665 kb on + strand, within EX28DRAFT_2631at 2670.665 kb on + strand, within EX28DRAFT_2631at 2670.666 kb on - strand, within EX28DRAFT_2631at 2670.666 kb on - strand, within EX28DRAFT_2631at 2670.743 kb on + strand, within EX28DRAFT_2631at 2670.743 kb on + strand, within EX28DRAFT_2631at 2670.743 kb on + strand, within EX28DRAFT_2631at 2670.743 kb on + strand, within EX28DRAFT_2631at 2670.743 kb on + strand, within EX28DRAFT_2631at 2670.744 kb on - strand, within EX28DRAFT_2631at 2670.744 kb on - strand, within EX28DRAFT_2631at 2670.744 kb on - strand, within EX28DRAFT_2631at 2670.744 kb on - strand, within EX28DRAFT_2631at 2670.744 kb on - strand, within EX28DRAFT_2631at 2670.744 kb on - strand, within EX28DRAFT_2631at 2670.747 kb on + strand, within EX28DRAFT_2631at 2670.748 kb on - strand, within EX28DRAFT_2631at 2670.804 kb on + strand, within EX28DRAFT_2631at 2670.809 kb on - strand, within EX28DRAFT_2631at 2670.899 kb on - strand, within EX28DRAFT_2631at 2670.899 kb on - strand, within EX28DRAFT_2631at 2670.911 kb on + strand, within EX28DRAFT_2631at 2670.912 kb on - strand, within EX28DRAFT_2631at 2670.997 kb on + strand, within EX28DRAFT_2631at 2671.074 kb on + strandat 2671.075 kb on - strandat 2671.078 kb on + strandat 2671.136 kb on + strandat 2671.137 kb on - strandat 2671.167 kb on - strandat 2671.257 kb on + strandat 2671.258 kb on - strandat 2671.258 kb on - strandat 2671.273 kb on - strand, within EX28DRAFT_2632at 2671.281 kb on + strand, within EX28DRAFT_2632at 2671.282 kb on - strand, within EX28DRAFT_2632at 2671.284 kb on - strand, within EX28DRAFT_2632at 2671.295 kb on + strand, within EX28DRAFT_2632at 2671.295 kb on + strand, within EX28DRAFT_2632at 2671.340 kb on + strand, within EX28DRAFT_2632at 2671.364 kb on + strand, within EX28DRAFT_2632at 2671.367 kb on - strand, within EX28DRAFT_2632at 2671.412 kb on + strand, within EX28DRAFT_2632at 2671.412 kb on + strand, within EX28DRAFT_2632at 2671.413 kb on - strand, within EX28DRAFT_2632at 2671.413 kb on - strand, within EX28DRAFT_2632at 2671.414 kb on + strand, within EX28DRAFT_2632at 2671.415 kb on - strand, within EX28DRAFT_2632at 2671.425 kb on + strand, within EX28DRAFT_2632at 2671.435 kb on + strand, within EX28DRAFT_2632at 2671.436 kb on - strand, within EX28DRAFT_2632at 2671.440 kb on - strand, within EX28DRAFT_2632at 2671.440 kb on - strand, within EX28DRAFT_2632at 2671.440 kb on - strand, within EX28DRAFT_2632at 2671.442 kb on + strand, within EX28DRAFT_2632at 2671.458 kb on + strand, within EX28DRAFT_2632at 2671.479 kb on - strand, within EX28DRAFT_2632at 2671.491 kb on + strand, within EX28DRAFT_2632at 2671.491 kb on + strand, within EX28DRAFT_2632at 2671.491 kb on + strand, within EX28DRAFT_2632at 2671.529 kb on + strand, within EX28DRAFT_2632at 2671.779 kb on - strand, within EX28DRAFT_2632at 2671.779 kb on - strand, within EX28DRAFT_2632at 2671.849 kb on + strand, within EX28DRAFT_2632at 2671.850 kb on - strand, within EX28DRAFT_2632at 2671.937 kb on + strand, within EX28DRAFT_2632at 2671.938 kb on - strand, within EX28DRAFT_2632at 2671.998 kb on + strand, within EX28DRAFT_2632at 2672.011 kb on - strand, within EX28DRAFT_2632

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,669,270 + -0.3
2,669,314 - -0.1
2,669,377 + -0.1
2,669,553 + EX28DRAFT_2630 0.27 -0.6
2,669,611 + EX28DRAFT_2630 0.35 +0.3
2,669,611 + EX28DRAFT_2630 0.35 +0.0
2,669,730 - EX28DRAFT_2630 0.52 +1.6
2,670,011 - +0.4
2,670,030 - +1.0
2,670,084 + -0.2
2,670,085 - -1.7
2,670,085 - +0.0
2,670,097 + -0.2
2,670,097 + -0.2
2,670,097 + +0.0
2,670,097 + -0.1
2,670,098 - +0.1
2,670,098 - +0.2
2,670,121 - -0.5
2,670,153 - -3.7
2,670,200 + EX28DRAFT_2631 0.11 +0.2
2,670,205 + EX28DRAFT_2631 0.11 +1.2
2,670,206 - EX28DRAFT_2631 0.11 -0.8
2,670,208 - EX28DRAFT_2631 0.11 +0.3
2,670,208 - EX28DRAFT_2631 0.11 +0.3
2,670,279 - EX28DRAFT_2631 0.18 +0.2
2,670,334 - EX28DRAFT_2631 0.23 -0.4
2,670,373 - EX28DRAFT_2631 0.27 +0.6
2,670,405 + EX28DRAFT_2631 0.30 -0.0
2,670,406 - EX28DRAFT_2631 0.30 +0.2
2,670,546 + EX28DRAFT_2631 0.43 -0.4
2,670,570 - EX28DRAFT_2631 0.46 -0.3
2,670,570 - EX28DRAFT_2631 0.46 -0.7
2,670,619 + EX28DRAFT_2631 0.50 +0.4
2,670,665 + EX28DRAFT_2631 0.54 -0.7
2,670,665 + EX28DRAFT_2631 0.54 -1.0
2,670,665 + EX28DRAFT_2631 0.54 +0.2
2,670,665 + EX28DRAFT_2631 0.54 -0.2
2,670,666 - EX28DRAFT_2631 0.55 +0.6
2,670,666 - EX28DRAFT_2631 0.55 +0.3
2,670,743 + EX28DRAFT_2631 0.62 +0.4
2,670,743 + EX28DRAFT_2631 0.62 +0.2
2,670,743 + EX28DRAFT_2631 0.62 +0.4
2,670,743 + EX28DRAFT_2631 0.62 +0.0
2,670,743 + EX28DRAFT_2631 0.62 +0.7
2,670,744 - EX28DRAFT_2631 0.62 -1.1
2,670,744 - EX28DRAFT_2631 0.62 -0.9
2,670,744 - EX28DRAFT_2631 0.62 -0.8
2,670,744 - EX28DRAFT_2631 0.62 -1.0
2,670,744 - EX28DRAFT_2631 0.62 -0.3
2,670,744 - EX28DRAFT_2631 0.62 +0.3
2,670,747 + EX28DRAFT_2631 0.62 -0.1
2,670,748 - EX28DRAFT_2631 0.62 +0.7
2,670,804 + EX28DRAFT_2631 0.68 +0.6
2,670,809 - EX28DRAFT_2631 0.68 -0.8
2,670,899 - EX28DRAFT_2631 0.77 -0.6
2,670,899 - EX28DRAFT_2631 0.77 +0.1
2,670,911 + EX28DRAFT_2631 0.78 -0.1
2,670,912 - EX28DRAFT_2631 0.78 +0.4
2,670,997 + EX28DRAFT_2631 0.86 -0.1
2,671,074 + -0.0
2,671,075 - -0.2
2,671,078 + -0.5
2,671,136 + -2.7
2,671,137 - -0.7
2,671,167 - -5.3
2,671,257 + -1.2
2,671,258 - +0.3
2,671,258 - -5.6
2,671,273 - EX28DRAFT_2632 0.11 -3.7
2,671,281 + EX28DRAFT_2632 0.12 -0.8
2,671,282 - EX28DRAFT_2632 0.12 -5.1
2,671,284 - EX28DRAFT_2632 0.12 -2.5
2,671,295 + EX28DRAFT_2632 0.13 -3.3
2,671,295 + EX28DRAFT_2632 0.13 -2.2
2,671,340 + EX28DRAFT_2632 0.17 -3.8
2,671,364 + EX28DRAFT_2632 0.19 -1.9
2,671,367 - EX28DRAFT_2632 0.19 -4.2
2,671,412 + EX28DRAFT_2632 0.23 -1.9
2,671,412 + EX28DRAFT_2632 0.23 -1.9
2,671,413 - EX28DRAFT_2632 0.23 +0.8
2,671,413 - EX28DRAFT_2632 0.23 -3.4
2,671,414 + EX28DRAFT_2632 0.23 -1.1
2,671,415 - EX28DRAFT_2632 0.23 -5.1
2,671,425 + EX28DRAFT_2632 0.24 -1.9
2,671,435 + EX28DRAFT_2632 0.25 -3.6
2,671,436 - EX28DRAFT_2632 0.25 -3.8
2,671,440 - EX28DRAFT_2632 0.25 -1.4
2,671,440 - EX28DRAFT_2632 0.25 -1.5
2,671,440 - EX28DRAFT_2632 0.25 -3.9
2,671,442 + EX28DRAFT_2632 0.25 -1.7
2,671,458 + EX28DRAFT_2632 0.27 -1.1
2,671,479 - EX28DRAFT_2632 0.28 -1.3
2,671,491 + EX28DRAFT_2632 0.29 -0.8
2,671,491 + EX28DRAFT_2632 0.29 -1.5
2,671,491 + EX28DRAFT_2632 0.29 -1.4
2,671,529 + EX28DRAFT_2632 0.33 -2.4
2,671,779 - EX28DRAFT_2632 0.54 -2.3
2,671,779 - EX28DRAFT_2632 0.54 -3.9
2,671,849 + EX28DRAFT_2632 0.60 -2.0
2,671,850 - EX28DRAFT_2632 0.60 -4.1
2,671,937 + EX28DRAFT_2632 0.67 -3.2
2,671,938 - EX28DRAFT_2632 0.67 -0.7
2,671,998 + EX28DRAFT_2632 0.72 -4.8
2,672,011 - EX28DRAFT_2632 0.73 -2.7

Or see this region's nucleotide sequence