Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2629 and EX28DRAFT_2630 overlap by 8 nucleotides EX28DRAFT_2630 and EX28DRAFT_2631 are separated by 14 nucleotides EX28DRAFT_2631 and EX28DRAFT_2632 overlap by 4 nucleotides
EX28DRAFT_2629: EX28DRAFT_2629 - nucleoside diphosphate kinase (EC 2.7.4.6), at 2,668,309 to 2,669,370
_2629
EX28DRAFT_2630: EX28DRAFT_2630 - hypothetical protein, at 2,669,363 to 2,670,073
_2630
EX28DRAFT_2631: EX28DRAFT_2631 - Protein of unknown function (DUF2817), at 2,670,088 to 2,671,146
_2631
EX28DRAFT_2632: EX28DRAFT_2632 - Major Facilitator Superfamily, at 2,671,143 to 2,672,324
_2632
Position (kb)
2670
2671
2672 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2669.270 kb on + strand at 2669.314 kb on - strand at 2669.377 kb on + strand at 2669.553 kb on + strand, within EX28DRAFT_2630 at 2669.611 kb on + strand, within EX28DRAFT_2630 at 2669.611 kb on + strand, within EX28DRAFT_2630 at 2669.730 kb on - strand, within EX28DRAFT_2630 at 2670.011 kb on - strand at 2670.030 kb on - strand at 2670.084 kb on + strand at 2670.085 kb on - strand at 2670.085 kb on - strand at 2670.097 kb on + strand at 2670.097 kb on + strand at 2670.097 kb on + strand at 2670.097 kb on + strand at 2670.098 kb on - strand at 2670.098 kb on - strand at 2670.121 kb on - strand at 2670.153 kb on - strand at 2670.200 kb on + strand, within EX28DRAFT_2631 at 2670.205 kb on + strand, within EX28DRAFT_2631 at 2670.206 kb on - strand, within EX28DRAFT_2631 at 2670.208 kb on - strand, within EX28DRAFT_2631 at 2670.208 kb on - strand, within EX28DRAFT_2631 at 2670.279 kb on - strand, within EX28DRAFT_2631 at 2670.334 kb on - strand, within EX28DRAFT_2631 at 2670.373 kb on - strand, within EX28DRAFT_2631 at 2670.405 kb on + strand, within EX28DRAFT_2631 at 2670.406 kb on - strand, within EX28DRAFT_2631 at 2670.546 kb on + strand, within EX28DRAFT_2631 at 2670.570 kb on - strand, within EX28DRAFT_2631 at 2670.570 kb on - strand, within EX28DRAFT_2631 at 2670.619 kb on + strand, within EX28DRAFT_2631 at 2670.665 kb on + strand, within EX28DRAFT_2631 at 2670.665 kb on + strand, within EX28DRAFT_2631 at 2670.665 kb on + strand, within EX28DRAFT_2631 at 2670.665 kb on + strand, within EX28DRAFT_2631 at 2670.666 kb on - strand, within EX28DRAFT_2631 at 2670.666 kb on - strand, within EX28DRAFT_2631 at 2670.743 kb on + strand, within EX28DRAFT_2631 at 2670.743 kb on + strand, within EX28DRAFT_2631 at 2670.743 kb on + strand, within EX28DRAFT_2631 at 2670.743 kb on + strand, within EX28DRAFT_2631 at 2670.743 kb on + strand, within EX28DRAFT_2631 at 2670.744 kb on - strand, within EX28DRAFT_2631 at 2670.744 kb on - strand, within EX28DRAFT_2631 at 2670.744 kb on - strand, within EX28DRAFT_2631 at 2670.744 kb on - strand, within EX28DRAFT_2631 at 2670.744 kb on - strand, within EX28DRAFT_2631 at 2670.744 kb on - strand, within EX28DRAFT_2631 at 2670.747 kb on + strand, within EX28DRAFT_2631 at 2670.748 kb on - strand, within EX28DRAFT_2631 at 2670.804 kb on + strand, within EX28DRAFT_2631 at 2670.809 kb on - strand, within EX28DRAFT_2631 at 2670.899 kb on - strand, within EX28DRAFT_2631 at 2670.899 kb on - strand, within EX28DRAFT_2631 at 2670.911 kb on + strand, within EX28DRAFT_2631 at 2670.912 kb on - strand, within EX28DRAFT_2631 at 2670.997 kb on + strand, within EX28DRAFT_2631 at 2671.074 kb on + strand at 2671.075 kb on - strand at 2671.078 kb on + strand at 2671.136 kb on + strand at 2671.137 kb on - strand at 2671.167 kb on - strand at 2671.257 kb on + strand at 2671.258 kb on - strand at 2671.258 kb on - strand at 2671.273 kb on - strand, within EX28DRAFT_2632 at 2671.281 kb on + strand, within EX28DRAFT_2632 at 2671.282 kb on - strand, within EX28DRAFT_2632 at 2671.284 kb on - strand, within EX28DRAFT_2632 at 2671.295 kb on + strand, within EX28DRAFT_2632 at 2671.295 kb on + strand, within EX28DRAFT_2632 at 2671.340 kb on + strand, within EX28DRAFT_2632 at 2671.364 kb on + strand, within EX28DRAFT_2632 at 2671.367 kb on - strand, within EX28DRAFT_2632 at 2671.412 kb on + strand, within EX28DRAFT_2632 at 2671.412 kb on + strand, within EX28DRAFT_2632 at 2671.413 kb on - strand, within EX28DRAFT_2632 at 2671.413 kb on - strand, within EX28DRAFT_2632 at 2671.414 kb on + strand, within EX28DRAFT_2632 at 2671.415 kb on - strand, within EX28DRAFT_2632 at 2671.425 kb on + strand, within EX28DRAFT_2632 at 2671.435 kb on + strand, within EX28DRAFT_2632 at 2671.436 kb on - strand, within EX28DRAFT_2632 at 2671.440 kb on - strand, within EX28DRAFT_2632 at 2671.440 kb on - strand, within EX28DRAFT_2632 at 2671.440 kb on - strand, within EX28DRAFT_2632 at 2671.442 kb on + strand, within EX28DRAFT_2632 at 2671.458 kb on + strand, within EX28DRAFT_2632 at 2671.479 kb on - strand, within EX28DRAFT_2632 at 2671.491 kb on + strand, within EX28DRAFT_2632 at 2671.491 kb on + strand, within EX28DRAFT_2632 at 2671.491 kb on + strand, within EX28DRAFT_2632 at 2671.529 kb on + strand, within EX28DRAFT_2632 at 2671.779 kb on - strand, within EX28DRAFT_2632 at 2671.779 kb on - strand, within EX28DRAFT_2632 at 2671.849 kb on + strand, within EX28DRAFT_2632 at 2671.850 kb on - strand, within EX28DRAFT_2632 at 2671.937 kb on + strand, within EX28DRAFT_2632 at 2671.938 kb on - strand, within EX28DRAFT_2632 at 2671.998 kb on + strand, within EX28DRAFT_2632 at 2672.011 kb on - strand, within EX28DRAFT_2632
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,669,270 + -0.3 2,669,314 - -0.1 2,669,377 + -0.1 2,669,553 + EX28DRAFT_2630 0.27 -0.6 2,669,611 + EX28DRAFT_2630 0.35 +0.3 2,669,611 + EX28DRAFT_2630 0.35 +0.0 2,669,730 - EX28DRAFT_2630 0.52 +1.6 2,670,011 - +0.4 2,670,030 - +1.0 2,670,084 + -0.2 2,670,085 - -1.7 2,670,085 - +0.0 2,670,097 + -0.2 2,670,097 + -0.2 2,670,097 + +0.0 2,670,097 + -0.1 2,670,098 - +0.1 2,670,098 - +0.2 2,670,121 - -0.5 2,670,153 - -3.7 2,670,200 + EX28DRAFT_2631 0.11 +0.2 2,670,205 + EX28DRAFT_2631 0.11 +1.2 2,670,206 - EX28DRAFT_2631 0.11 -0.8 2,670,208 - EX28DRAFT_2631 0.11 +0.3 2,670,208 - EX28DRAFT_2631 0.11 +0.3 2,670,279 - EX28DRAFT_2631 0.18 +0.2 2,670,334 - EX28DRAFT_2631 0.23 -0.4 2,670,373 - EX28DRAFT_2631 0.27 +0.6 2,670,405 + EX28DRAFT_2631 0.30 -0.0 2,670,406 - EX28DRAFT_2631 0.30 +0.2 2,670,546 + EX28DRAFT_2631 0.43 -0.4 2,670,570 - EX28DRAFT_2631 0.46 -0.3 2,670,570 - EX28DRAFT_2631 0.46 -0.7 2,670,619 + EX28DRAFT_2631 0.50 +0.4 2,670,665 + EX28DRAFT_2631 0.54 -0.7 2,670,665 + EX28DRAFT_2631 0.54 -1.0 2,670,665 + EX28DRAFT_2631 0.54 +0.2 2,670,665 + EX28DRAFT_2631 0.54 -0.2 2,670,666 - EX28DRAFT_2631 0.55 +0.6 2,670,666 - EX28DRAFT_2631 0.55 +0.3 2,670,743 + EX28DRAFT_2631 0.62 +0.4 2,670,743 + EX28DRAFT_2631 0.62 +0.2 2,670,743 + EX28DRAFT_2631 0.62 +0.4 2,670,743 + EX28DRAFT_2631 0.62 +0.0 2,670,743 + EX28DRAFT_2631 0.62 +0.7 2,670,744 - EX28DRAFT_2631 0.62 -1.1 2,670,744 - EX28DRAFT_2631 0.62 -0.9 2,670,744 - EX28DRAFT_2631 0.62 -0.8 2,670,744 - EX28DRAFT_2631 0.62 -1.0 2,670,744 - EX28DRAFT_2631 0.62 -0.3 2,670,744 - EX28DRAFT_2631 0.62 +0.3 2,670,747 + EX28DRAFT_2631 0.62 -0.1 2,670,748 - EX28DRAFT_2631 0.62 +0.7 2,670,804 + EX28DRAFT_2631 0.68 +0.6 2,670,809 - EX28DRAFT_2631 0.68 -0.8 2,670,899 - EX28DRAFT_2631 0.77 -0.6 2,670,899 - EX28DRAFT_2631 0.77 +0.1 2,670,911 + EX28DRAFT_2631 0.78 -0.1 2,670,912 - EX28DRAFT_2631 0.78 +0.4 2,670,997 + EX28DRAFT_2631 0.86 -0.1 2,671,074 + -0.0 2,671,075 - -0.2 2,671,078 + -0.5 2,671,136 + -2.7 2,671,137 - -0.7 2,671,167 - -5.3 2,671,257 + -1.2 2,671,258 - +0.3 2,671,258 - -5.6 2,671,273 - EX28DRAFT_2632 0.11 -3.7 2,671,281 + EX28DRAFT_2632 0.12 -0.8 2,671,282 - EX28DRAFT_2632 0.12 -5.1 2,671,284 - EX28DRAFT_2632 0.12 -2.5 2,671,295 + EX28DRAFT_2632 0.13 -3.3 2,671,295 + EX28DRAFT_2632 0.13 -2.2 2,671,340 + EX28DRAFT_2632 0.17 -3.8 2,671,364 + EX28DRAFT_2632 0.19 -1.9 2,671,367 - EX28DRAFT_2632 0.19 -4.2 2,671,412 + EX28DRAFT_2632 0.23 -1.9 2,671,412 + EX28DRAFT_2632 0.23 -1.9 2,671,413 - EX28DRAFT_2632 0.23 +0.8 2,671,413 - EX28DRAFT_2632 0.23 -3.4 2,671,414 + EX28DRAFT_2632 0.23 -1.1 2,671,415 - EX28DRAFT_2632 0.23 -5.1 2,671,425 + EX28DRAFT_2632 0.24 -1.9 2,671,435 + EX28DRAFT_2632 0.25 -3.6 2,671,436 - EX28DRAFT_2632 0.25 -3.8 2,671,440 - EX28DRAFT_2632 0.25 -1.4 2,671,440 - EX28DRAFT_2632 0.25 -1.5 2,671,440 - EX28DRAFT_2632 0.25 -3.9 2,671,442 + EX28DRAFT_2632 0.25 -1.7 2,671,458 + EX28DRAFT_2632 0.27 -1.1 2,671,479 - EX28DRAFT_2632 0.28 -1.3 2,671,491 + EX28DRAFT_2632 0.29 -0.8 2,671,491 + EX28DRAFT_2632 0.29 -1.5 2,671,491 + EX28DRAFT_2632 0.29 -1.4 2,671,529 + EX28DRAFT_2632 0.33 -2.4 2,671,779 - EX28DRAFT_2632 0.54 -2.3 2,671,779 - EX28DRAFT_2632 0.54 -3.9 2,671,849 + EX28DRAFT_2632 0.60 -2.0 2,671,850 - EX28DRAFT_2632 0.60 -4.1 2,671,937 + EX28DRAFT_2632 0.67 -3.2 2,671,938 - EX28DRAFT_2632 0.67 -0.7 2,671,998 + EX28DRAFT_2632 0.72 -4.8 2,672,011 - EX28DRAFT_2632 0.73 -2.7
Or see this region's nucleotide sequence