Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2617

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2615 and EX28DRAFT_2616 are separated by 50 nucleotidesEX28DRAFT_2616 and EX28DRAFT_2617 are separated by 99 nucleotidesEX28DRAFT_2617 and EX28DRAFT_2618 are separated by 665 nucleotides EX28DRAFT_2615: EX28DRAFT_2615 - drug resistance transporter, EmrB/QacA subfamily, at 2,653,197 to 2,654,741 _2615 EX28DRAFT_2616: EX28DRAFT_2616 - hypothetical protein, at 2,654,792 to 2,655,088 _2616 EX28DRAFT_2617: EX28DRAFT_2617 - Ion channel, at 2,655,188 to 2,655,883 _2617 EX28DRAFT_2618: EX28DRAFT_2618 - Uncharacterized protein conserved in bacteria, at 2,656,549 to 2,657,043 _2618 Position (kb) 2655 2656Strain fitness (log2 ratio) -1 0 1at 2654.190 kb on - strand, within EX28DRAFT_2615at 2654.219 kb on - strand, within EX28DRAFT_2615at 2654.222 kb on + strand, within EX28DRAFT_2615at 2654.222 kb on + strand, within EX28DRAFT_2615at 2654.308 kb on + strand, within EX28DRAFT_2615at 2654.343 kb on + strand, within EX28DRAFT_2615at 2654.343 kb on + strand, within EX28DRAFT_2615at 2654.344 kb on - strand, within EX28DRAFT_2615at 2654.346 kb on + strand, within EX28DRAFT_2615at 2654.346 kb on + strand, within EX28DRAFT_2615at 2654.346 kb on + strand, within EX28DRAFT_2615at 2654.346 kb on + strand, within EX28DRAFT_2615at 2654.347 kb on - strand, within EX28DRAFT_2615at 2654.380 kb on + strand, within EX28DRAFT_2615at 2654.380 kb on + strand, within EX28DRAFT_2615at 2654.381 kb on - strand, within EX28DRAFT_2615at 2654.489 kb on + strand, within EX28DRAFT_2615at 2654.490 kb on - strand, within EX28DRAFT_2615at 2654.491 kb on + strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.526 kb on - strand, within EX28DRAFT_2615at 2654.549 kb on + strand, within EX28DRAFT_2615at 2654.606 kb on - strandat 2654.807 kb on + strandat 2655.235 kb on + strandat 2655.595 kb on + strand, within EX28DRAFT_2617at 2655.607 kb on + strand, within EX28DRAFT_2617at 2655.667 kb on + strand, within EX28DRAFT_2617at 2655.759 kb on + strand, within EX28DRAFT_2617at 2655.775 kb on + strand, within EX28DRAFT_2617at 2655.813 kb on - strand, within EX28DRAFT_2617at 2655.851 kb on - strandat 2655.912 kb on + strandat 2655.913 kb on - strandat 2655.981 kb on - strandat 2656.294 kb on + strandat 2656.303 kb on + strandat 2656.487 kb on + strandat 2656.572 kb on - strandat 2656.747 kb on + strand, within EX28DRAFT_2618at 2656.818 kb on + strand, within EX28DRAFT_2618at 2656.818 kb on + strand, within EX28DRAFT_2618at 2656.819 kb on - strand, within EX28DRAFT_2618at 2656.819 kb on - strand, within EX28DRAFT_2618at 2656.875 kb on + strand, within EX28DRAFT_2618

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
2,654,190 - EX28DRAFT_2615 0.64 +0.2
2,654,219 - EX28DRAFT_2615 0.66 -0.9
2,654,222 + EX28DRAFT_2615 0.66 -0.2
2,654,222 + EX28DRAFT_2615 0.66 -0.3
2,654,308 + EX28DRAFT_2615 0.72 +1.0
2,654,343 + EX28DRAFT_2615 0.74 +0.0
2,654,343 + EX28DRAFT_2615 0.74 +0.1
2,654,344 - EX28DRAFT_2615 0.74 +0.4
2,654,346 + EX28DRAFT_2615 0.74 +0.6
2,654,346 + EX28DRAFT_2615 0.74 +0.6
2,654,346 + EX28DRAFT_2615 0.74 -0.6
2,654,346 + EX28DRAFT_2615 0.74 -0.0
2,654,347 - EX28DRAFT_2615 0.74 -0.6
2,654,380 + EX28DRAFT_2615 0.77 +1.0
2,654,380 + EX28DRAFT_2615 0.77 -0.1
2,654,381 - EX28DRAFT_2615 0.77 +0.9
2,654,489 + EX28DRAFT_2615 0.84 -0.6
2,654,490 - EX28DRAFT_2615 0.84 -0.3
2,654,491 + EX28DRAFT_2615 0.84 +0.2
2,654,492 - EX28DRAFT_2615 0.84 -1.2
2,654,492 - EX28DRAFT_2615 0.84 +0.5
2,654,492 - EX28DRAFT_2615 0.84 -0.3
2,654,492 - EX28DRAFT_2615 0.84 -0.1
2,654,492 - EX28DRAFT_2615 0.84 -0.6
2,654,492 - EX28DRAFT_2615 0.84 +0.0
2,654,526 - EX28DRAFT_2615 0.86 +0.3
2,654,549 + EX28DRAFT_2615 0.88 +0.2
2,654,606 - -0.1
2,654,807 + -0.0
2,655,235 + -0.7
2,655,595 + EX28DRAFT_2617 0.58 -0.2
2,655,607 + EX28DRAFT_2617 0.60 +0.1
2,655,667 + EX28DRAFT_2617 0.69 -0.1
2,655,759 + EX28DRAFT_2617 0.82 -1.0
2,655,775 + EX28DRAFT_2617 0.84 -0.7
2,655,813 - EX28DRAFT_2617 0.90 -0.1
2,655,851 - +0.4
2,655,912 + +1.1
2,655,913 - -0.8
2,655,981 - -0.4
2,656,294 + -0.4
2,656,303 + -0.8
2,656,487 + -0.3
2,656,572 - -0.8
2,656,747 + EX28DRAFT_2618 0.40 -0.1
2,656,818 + EX28DRAFT_2618 0.54 -0.5
2,656,818 + EX28DRAFT_2618 0.54 -0.0
2,656,819 - EX28DRAFT_2618 0.55 -0.0
2,656,819 - EX28DRAFT_2618 0.55 +0.1
2,656,875 + EX28DRAFT_2618 0.66 +0.5

Or see this region's nucleotide sequence