Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2590 and EX28DRAFT_2591 are separated by 168 nucleotides EX28DRAFT_2591 and EX28DRAFT_2592 are separated by 103 nucleotides
EX28DRAFT_2590: EX28DRAFT_2590 - Arabinose efflux permease, at 2,624,551 to 2,625,765
_2590
EX28DRAFT_2591: EX28DRAFT_2591 - Uncharacterized protein conserved in bacteria, at 2,625,934 to 2,626,617
_2591
EX28DRAFT_2592: EX28DRAFT_2592 - D-alanine--D-alanine ligase, at 2,626,721 to 2,627,821
_2592
Position (kb)
2625
2626
2627 Strain fitness (log2 ratio)
-1
0
1 at 2625.103 kb on - strand, within EX28DRAFT_2590 at 2625.184 kb on - strand, within EX28DRAFT_2590 at 2625.264 kb on + strand, within EX28DRAFT_2590 at 2625.264 kb on + strand, within EX28DRAFT_2590 at 2625.264 kb on + strand, within EX28DRAFT_2590 at 2625.265 kb on - strand, within EX28DRAFT_2590 at 2625.265 kb on - strand, within EX28DRAFT_2590 at 2625.265 kb on - strand, within EX28DRAFT_2590 at 2625.268 kb on + strand, within EX28DRAFT_2590 at 2625.355 kb on - strand, within EX28DRAFT_2590 at 2625.671 kb on + strand at 2625.672 kb on - strand at 2625.774 kb on - strand at 2625.866 kb on + strand at 2625.866 kb on + strand at 2625.867 kb on - strand at 2625.925 kb on + strand at 2625.928 kb on + strand at 2625.928 kb on + strand at 2625.994 kb on - strand at 2625.995 kb on + strand at 2625.995 kb on + strand at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.482 kb on + strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.483 kb on - strand, within EX28DRAFT_2591 at 2626.484 kb on + strand, within EX28DRAFT_2591 at 2626.485 kb on - strand, within EX28DRAFT_2591 at 2626.495 kb on - strand, within EX28DRAFT_2591 at 2626.528 kb on - strand, within EX28DRAFT_2591 at 2626.539 kb on - strand, within EX28DRAFT_2591 at 2626.539 kb on - strand, within EX28DRAFT_2591 at 2626.540 kb on - strand, within EX28DRAFT_2591 at 2626.541 kb on + strand, within EX28DRAFT_2591 at 2626.683 kb on + strand at 2626.683 kb on + strand at 2626.683 kb on + strand at 2626.684 kb on - strand at 2626.684 kb on - strand at 2626.684 kb on - strand at 2626.689 kb on - strand at 2626.689 kb on - strand at 2626.727 kb on - strand at 2626.741 kb on + strand at 2626.742 kb on - strand at 2626.852 kb on + strand, within EX28DRAFT_2592 at 2627.369 kb on - strand, within EX28DRAFT_2592 at 2627.389 kb on + strand, within EX28DRAFT_2592 at 2627.393 kb on - strand, within EX28DRAFT_2592 at 2627.393 kb on - strand, within EX28DRAFT_2592 at 2627.466 kb on + strand, within EX28DRAFT_2592 at 2627.467 kb on - strand, within EX28DRAFT_2592 at 2627.467 kb on - strand, within EX28DRAFT_2592 at 2627.487 kb on - strand, within EX28DRAFT_2592 at 2627.498 kb on + strand, within EX28DRAFT_2592 at 2627.498 kb on + strand, within EX28DRAFT_2592 at 2627.498 kb on + strand, within EX28DRAFT_2592 at 2627.499 kb on - strand, within EX28DRAFT_2592 at 2627.499 kb on - strand, within EX28DRAFT_2592 at 2627.499 kb on - strand, within EX28DRAFT_2592 at 2627.560 kb on + strand, within EX28DRAFT_2592
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,625,103 - EX28DRAFT_2590 0.45 +0.0 2,625,184 - EX28DRAFT_2590 0.52 +0.3 2,625,264 + EX28DRAFT_2590 0.59 +0.1 2,625,264 + EX28DRAFT_2590 0.59 -1.7 2,625,264 + EX28DRAFT_2590 0.59 -0.3 2,625,265 - EX28DRAFT_2590 0.59 +0.2 2,625,265 - EX28DRAFT_2590 0.59 -0.2 2,625,265 - EX28DRAFT_2590 0.59 +0.7 2,625,268 + EX28DRAFT_2590 0.59 -0.7 2,625,355 - EX28DRAFT_2590 0.66 -0.3 2,625,671 + +0.8 2,625,672 - +0.0 2,625,774 - +0.0 2,625,866 + -1.1 2,625,866 + +0.0 2,625,867 - +0.4 2,625,925 + +0.1 2,625,928 + -1.2 2,625,928 + -0.2 2,625,994 - -0.3 2,625,995 + -0.2 2,625,995 + +0.7 2,626,482 + EX28DRAFT_2591 0.80 -0.1 2,626,482 + EX28DRAFT_2591 0.80 +0.1 2,626,482 + EX28DRAFT_2591 0.80 +0.2 2,626,482 + EX28DRAFT_2591 0.80 +1.0 2,626,482 + EX28DRAFT_2591 0.80 +0.1 2,626,483 - EX28DRAFT_2591 0.80 -0.1 2,626,483 - EX28DRAFT_2591 0.80 +0.5 2,626,483 - EX28DRAFT_2591 0.80 -0.6 2,626,483 - EX28DRAFT_2591 0.80 -0.0 2,626,484 + EX28DRAFT_2591 0.80 +0.2 2,626,485 - EX28DRAFT_2591 0.81 +0.2 2,626,495 - EX28DRAFT_2591 0.82 +1.5 2,626,528 - EX28DRAFT_2591 0.87 +0.0 2,626,539 - EX28DRAFT_2591 0.88 +0.2 2,626,539 - EX28DRAFT_2591 0.88 +0.1 2,626,540 - EX28DRAFT_2591 0.89 -0.1 2,626,541 + EX28DRAFT_2591 0.89 -0.8 2,626,683 + -0.1 2,626,683 + +0.4 2,626,683 + -0.8 2,626,684 - -0.5 2,626,684 - -0.3 2,626,684 - -0.2 2,626,689 - -0.6 2,626,689 - +0.7 2,626,727 - +0.0 2,626,741 + +0.3 2,626,742 - -0.8 2,626,852 + EX28DRAFT_2592 0.12 -0.6 2,627,369 - EX28DRAFT_2592 0.59 -0.0 2,627,389 + EX28DRAFT_2592 0.61 -0.7 2,627,393 - EX28DRAFT_2592 0.61 +0.6 2,627,393 - EX28DRAFT_2592 0.61 -0.5 2,627,466 + EX28DRAFT_2592 0.68 -0.2 2,627,467 - EX28DRAFT_2592 0.68 +0.5 2,627,467 - EX28DRAFT_2592 0.68 +0.3 2,627,487 - EX28DRAFT_2592 0.70 +0.6 2,627,498 + EX28DRAFT_2592 0.71 +0.1 2,627,498 + EX28DRAFT_2592 0.71 +0.2 2,627,498 + EX28DRAFT_2592 0.71 +0.4 2,627,499 - EX28DRAFT_2592 0.71 +1.2 2,627,499 - EX28DRAFT_2592 0.71 -0.4 2,627,499 - EX28DRAFT_2592 0.71 -0.4 2,627,560 + EX28DRAFT_2592 0.76 -1.7
Or see this region's nucleotide sequence