Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2538

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2536 and EX28DRAFT_2537 are separated by 308 nucleotidesEX28DRAFT_2537 and EX28DRAFT_2538 are separated by 46 nucleotidesEX28DRAFT_2538 and EX28DRAFT_2539 are separated by 477 nucleotides EX28DRAFT_2536: EX28DRAFT_2536 - Stress-induced morphogen (activity unknown), at 2,568,431 to 2,568,745 _2536 EX28DRAFT_2537: EX28DRAFT_2537 - Uncharacterized lipoprotein, at 2,569,054 to 2,569,632 _2537 EX28DRAFT_2538: EX28DRAFT_2538 - AmpG-like permease, at 2,569,679 to 2,571,154 _2538 EX28DRAFT_2539: EX28DRAFT_2539 - cytochrome o ubiquinol oxidase subunit II, at 2,571,632 to 2,572,579 _2539 Position (kb) 2569 2570 2571 2572Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2568.695 kb on + strand, within EX28DRAFT_2536at 2568.696 kb on - strand, within EX28DRAFT_2536at 2568.717 kb on - strandat 2568.728 kb on + strandat 2568.728 kb on + strandat 2568.728 kb on + strandat 2568.728 kb on + strandat 2568.729 kb on - strandat 2568.729 kb on - strandat 2568.730 kb on + strandat 2568.730 kb on + strandat 2568.731 kb on - strandat 2568.731 kb on - strandat 2568.731 kb on - strandat 2568.740 kb on + strandat 2568.741 kb on - strandat 2568.906 kb on + strandat 2568.961 kb on + strandat 2568.999 kb on + strandat 2569.000 kb on - strandat 2569.023 kb on + strandat 2569.024 kb on - strandat 2569.024 kb on - strandat 2569.025 kb on + strandat 2569.025 kb on + strandat 2569.025 kb on + strandat 2569.031 kb on + strandat 2569.498 kb on + strand, within EX28DRAFT_2537at 2569.499 kb on - strand, within EX28DRAFT_2537at 2569.499 kb on - strand, within EX28DRAFT_2537at 2569.581 kb on + strandat 2569.654 kb on - strandat 2569.654 kb on - strandat 2569.654 kb on - strandat 2569.691 kb on + strandat 2569.691 kb on + strandat 2569.692 kb on - strandat 2569.692 kb on - strandat 2569.692 kb on - strandat 2569.695 kb on + strandat 2569.854 kb on - strand, within EX28DRAFT_2538at 2569.861 kb on + strand, within EX28DRAFT_2538at 2569.892 kb on + strand, within EX28DRAFT_2538at 2569.893 kb on - strand, within EX28DRAFT_2538at 2570.186 kb on + strand, within EX28DRAFT_2538at 2570.207 kb on + strand, within EX28DRAFT_2538at 2570.208 kb on - strand, within EX28DRAFT_2538at 2570.208 kb on - strand, within EX28DRAFT_2538at 2570.208 kb on - strand, within EX28DRAFT_2538at 2570.378 kb on + strand, within EX28DRAFT_2538at 2570.379 kb on - strand, within EX28DRAFT_2538at 2570.379 kb on - strand, within EX28DRAFT_2538at 2570.380 kb on + strand, within EX28DRAFT_2538at 2570.380 kb on + strand, within EX28DRAFT_2538at 2570.381 kb on - strand, within EX28DRAFT_2538at 2570.471 kb on - strand, within EX28DRAFT_2538at 2570.511 kb on - strand, within EX28DRAFT_2538at 2570.624 kb on - strand, within EX28DRAFT_2538at 2570.624 kb on - strand, within EX28DRAFT_2538at 2570.900 kb on + strand, within EX28DRAFT_2538at 2570.923 kb on + strand, within EX28DRAFT_2538at 2571.017 kb on - strandat 2571.020 kb on - strandat 2571.043 kb on - strandat 2571.445 kb on - strandat 2571.446 kb on + strandat 2571.486 kb on + strandat 2571.487 kb on - strandat 2571.691 kb on - strandat 2571.863 kb on + strand, within EX28DRAFT_2539at 2571.863 kb on + strand, within EX28DRAFT_2539at 2571.864 kb on - strand, within EX28DRAFT_2539at 2571.866 kb on - strand, within EX28DRAFT_2539at 2571.920 kb on - strand, within EX28DRAFT_2539at 2572.012 kb on + strand, within EX28DRAFT_2539

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,568,695 + EX28DRAFT_2536 0.84 -1.0
2,568,696 - EX28DRAFT_2536 0.84 +0.3
2,568,717 - -0.1
2,568,728 + -1.5
2,568,728 + -3.2
2,568,728 + -0.4
2,568,728 + -0.3
2,568,729 - +0.1
2,568,729 - +0.2
2,568,730 + -0.8
2,568,730 + -0.7
2,568,731 - +0.4
2,568,731 - -0.2
2,568,731 - -0.2
2,568,740 + -0.1
2,568,741 - -1.0
2,568,906 + +0.3
2,568,961 + -0.4
2,568,999 + -1.4
2,569,000 - -0.5
2,569,023 + -0.6
2,569,024 - +1.0
2,569,024 - -0.6
2,569,025 + -0.6
2,569,025 + -2.0
2,569,025 + -0.1
2,569,031 + +0.1
2,569,498 + EX28DRAFT_2537 0.77 -0.2
2,569,499 - EX28DRAFT_2537 0.77 -0.2
2,569,499 - EX28DRAFT_2537 0.77 -0.5
2,569,581 + +0.3
2,569,654 - +0.1
2,569,654 - +0.4
2,569,654 - +0.1
2,569,691 + -0.4
2,569,691 + -0.4
2,569,692 - +1.2
2,569,692 - -0.3
2,569,692 - +0.2
2,569,695 + +0.2
2,569,854 - EX28DRAFT_2538 0.12 +0.3
2,569,861 + EX28DRAFT_2538 0.12 -2.3
2,569,892 + EX28DRAFT_2538 0.14 -0.6
2,569,893 - EX28DRAFT_2538 0.14 -0.2
2,570,186 + EX28DRAFT_2538 0.34 -0.0
2,570,207 + EX28DRAFT_2538 0.36 +0.2
2,570,208 - EX28DRAFT_2538 0.36 +0.2
2,570,208 - EX28DRAFT_2538 0.36 -0.4
2,570,208 - EX28DRAFT_2538 0.36 -0.5
2,570,378 + EX28DRAFT_2538 0.47 -0.3
2,570,379 - EX28DRAFT_2538 0.47 +0.7
2,570,379 - EX28DRAFT_2538 0.47 -0.1
2,570,380 + EX28DRAFT_2538 0.47 +0.0
2,570,380 + EX28DRAFT_2538 0.47 -1.3
2,570,381 - EX28DRAFT_2538 0.48 -0.1
2,570,471 - EX28DRAFT_2538 0.54 -0.2
2,570,511 - EX28DRAFT_2538 0.56 +0.1
2,570,624 - EX28DRAFT_2538 0.64 -0.0
2,570,624 - EX28DRAFT_2538 0.64 -0.5
2,570,900 + EX28DRAFT_2538 0.83 +1.2
2,570,923 + EX28DRAFT_2538 0.84 +1.5
2,571,017 - +2.6
2,571,020 - -0.1
2,571,043 - +0.2
2,571,445 - -0.3
2,571,446 + -0.1
2,571,486 + +0.3
2,571,487 - -1.0
2,571,691 - -0.9
2,571,863 + EX28DRAFT_2539 0.24 +0.6
2,571,863 + EX28DRAFT_2539 0.24 -0.3
2,571,864 - EX28DRAFT_2539 0.24 -1.8
2,571,866 - EX28DRAFT_2539 0.25 -2.4
2,571,920 - EX28DRAFT_2539 0.30 -0.1
2,572,012 + EX28DRAFT_2539 0.40 -0.9

Or see this region's nucleotide sequence