Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2445 and EX28DRAFT_2446 are separated by 14 nucleotides EX28DRAFT_2446 and EX28DRAFT_2447 are separated by 34 nucleotides EX28DRAFT_2447 and EX28DRAFT_2448 are separated by 68 nucleotides EX28DRAFT_2448 and EX28DRAFT_2449 are separated by 310 nucleotides
EX28DRAFT_2445: EX28DRAFT_2445 - P pilus assembly protein, porin PapC, at 2,475,184 to 2,477,745
_2445
EX28DRAFT_2446: EX28DRAFT_2446 - P pilus assembly protein, chaperone PapD, at 2,477,760 to 2,478,452
_2446
EX28DRAFT_2447: EX28DRAFT_2447 - P pilus assembly protein, pilin FimA, at 2,478,487 to 2,479,032
_2447
EX28DRAFT_2448: EX28DRAFT_2448 - P pilus assembly protein, pilin FimA, at 2,479,101 to 2,479,664
_2448
EX28DRAFT_2449: EX28DRAFT_2449 - 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase, at 2,479,975 to 2,480,841
_2449
Position (kb)
2478
2479
2480 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2477.929 kb on + strand, within EX28DRAFT_2446 at 2477.930 kb on - strand, within EX28DRAFT_2446 at 2477.932 kb on + strand, within EX28DRAFT_2446 at 2477.932 kb on + strand, within EX28DRAFT_2446 at 2477.933 kb on - strand, within EX28DRAFT_2446 at 2477.933 kb on - strand, within EX28DRAFT_2446 at 2478.128 kb on - strand, within EX28DRAFT_2446 at 2478.174 kb on - strand, within EX28DRAFT_2446 at 2478.174 kb on - strand, within EX28DRAFT_2446 at 2478.174 kb on - strand, within EX28DRAFT_2446 at 2478.177 kb on - strand, within EX28DRAFT_2446 at 2478.177 kb on - strand, within EX28DRAFT_2446 at 2478.280 kb on - strand, within EX28DRAFT_2446 at 2478.280 kb on - strand, within EX28DRAFT_2446 at 2478.280 kb on - strand, within EX28DRAFT_2446 at 2478.438 kb on - strand at 2478.468 kb on - strand at 2478.495 kb on - strand at 2478.505 kb on - strand at 2478.552 kb on + strand, within EX28DRAFT_2447 at 2478.808 kb on - strand, within EX28DRAFT_2447 at 2478.808 kb on - strand, within EX28DRAFT_2447 at 2478.808 kb on - strand, within EX28DRAFT_2447 at 2478.885 kb on + strand, within EX28DRAFT_2447 at 2478.886 kb on - strand, within EX28DRAFT_2447 at 2478.886 kb on - strand, within EX28DRAFT_2447 at 2479.013 kb on - strand at 2479.102 kb on + strand at 2479.102 kb on + strand at 2479.103 kb on - strand at 2479.103 kb on - strand at 2479.108 kb on + strand at 2479.109 kb on - strand at 2479.109 kb on - strand at 2479.109 kb on - strand at 2479.116 kb on + strand at 2479.175 kb on - strand, within EX28DRAFT_2448 at 2479.431 kb on - strand, within EX28DRAFT_2448 at 2479.433 kb on + strand, within EX28DRAFT_2448 at 2479.433 kb on + strand, within EX28DRAFT_2448 at 2479.434 kb on - strand, within EX28DRAFT_2448 at 2479.458 kb on - strand, within EX28DRAFT_2448 at 2479.475 kb on - strand, within EX28DRAFT_2448 at 2479.512 kb on - strand, within EX28DRAFT_2448 at 2479.516 kb on - strand, within EX28DRAFT_2448 at 2479.516 kb on - strand, within EX28DRAFT_2448 at 2479.516 kb on - strand, within EX28DRAFT_2448 at 2479.548 kb on - strand, within EX28DRAFT_2448 at 2479.548 kb on - strand, within EX28DRAFT_2448 at 2479.548 kb on - strand, within EX28DRAFT_2448 at 2479.554 kb on + strand, within EX28DRAFT_2448 at 2479.554 kb on + strand, within EX28DRAFT_2448 at 2479.555 kb on - strand, within EX28DRAFT_2448 at 2479.555 kb on - strand, within EX28DRAFT_2448 at 2479.555 kb on - strand, within EX28DRAFT_2448 at 2479.555 kb on - strand, within EX28DRAFT_2448 at 2479.628 kb on + strand at 2479.628 kb on + strand at 2479.629 kb on - strand at 2479.629 kb on - strand at 2479.629 kb on - strand at 2479.629 kb on - strand at 2479.634 kb on + strand at 2479.635 kb on - strand at 2479.635 kb on - strand at 2479.640 kb on + strand at 2479.640 kb on + strand at 2479.640 kb on + strand at 2479.640 kb on + strand at 2479.641 kb on - strand at 2479.641 kb on - strand at 2479.641 kb on - strand at 2479.668 kb on + strand at 2479.669 kb on - strand at 2479.669 kb on - strand at 2479.669 kb on - strand at 2479.676 kb on + strand at 2479.684 kb on - strand at 2479.684 kb on - strand at 2479.687 kb on + strand at 2479.687 kb on + strand at 2479.688 kb on - strand at 2479.688 kb on - strand at 2479.688 kb on - strand at 2479.714 kb on - strand at 2479.720 kb on + strand at 2479.721 kb on - strand at 2479.721 kb on - strand at 2479.721 kb on - strand at 2479.721 kb on - strand at 2479.721 kb on - strand at 2479.734 kb on + strand at 2479.746 kb on + strand at 2479.747 kb on - strand at 2479.765 kb on + strand at 2479.766 kb on - strand at 2479.784 kb on + strand at 2479.785 kb on - strand at 2479.785 kb on - strand at 2479.788 kb on + strand at 2479.788 kb on + strand at 2479.788 kb on + strand at 2479.788 kb on + strand at 2479.789 kb on - strand at 2479.824 kb on + strand at 2479.824 kb on + strand at 2479.834 kb on + strand at 2479.835 kb on - strand at 2479.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,477,929 + EX28DRAFT_2446 0.24 +0.1 2,477,930 - EX28DRAFT_2446 0.25 -1.2 2,477,932 + EX28DRAFT_2446 0.25 -0.1 2,477,932 + EX28DRAFT_2446 0.25 +0.4 2,477,933 - EX28DRAFT_2446 0.25 -0.0 2,477,933 - EX28DRAFT_2446 0.25 -0.9 2,478,128 - EX28DRAFT_2446 0.53 -1.5 2,478,174 - EX28DRAFT_2446 0.60 +2.2 2,478,174 - EX28DRAFT_2446 0.60 -0.7 2,478,174 - EX28DRAFT_2446 0.60 -0.7 2,478,177 - EX28DRAFT_2446 0.60 +0.0 2,478,177 - EX28DRAFT_2446 0.60 +0.9 2,478,280 - EX28DRAFT_2446 0.75 -0.3 2,478,280 - EX28DRAFT_2446 0.75 -0.1 2,478,280 - EX28DRAFT_2446 0.75 +1.0 2,478,438 - +0.2 2,478,468 - -0.7 2,478,495 - +3.1 2,478,505 - -1.0 2,478,552 + EX28DRAFT_2447 0.12 +0.3 2,478,808 - EX28DRAFT_2447 0.59 +1.2 2,478,808 - EX28DRAFT_2447 0.59 +0.7 2,478,808 - EX28DRAFT_2447 0.59 -0.5 2,478,885 + EX28DRAFT_2447 0.73 +0.9 2,478,886 - EX28DRAFT_2447 0.73 +1.0 2,478,886 - EX28DRAFT_2447 0.73 -0.3 2,479,013 - +0.4 2,479,102 + +0.9 2,479,102 + +0.3 2,479,103 - +0.0 2,479,103 - +0.9 2,479,108 + +0.4 2,479,109 - +0.6 2,479,109 - +0.7 2,479,109 - +0.4 2,479,116 + +0.3 2,479,175 - EX28DRAFT_2448 0.13 +0.1 2,479,431 - EX28DRAFT_2448 0.59 -0.4 2,479,433 + EX28DRAFT_2448 0.59 -0.1 2,479,433 + EX28DRAFT_2448 0.59 -0.1 2,479,434 - EX28DRAFT_2448 0.59 -0.6 2,479,458 - EX28DRAFT_2448 0.63 -0.1 2,479,475 - EX28DRAFT_2448 0.66 -0.4 2,479,512 - EX28DRAFT_2448 0.73 +0.4 2,479,516 - EX28DRAFT_2448 0.74 +0.2 2,479,516 - EX28DRAFT_2448 0.74 +0.6 2,479,516 - EX28DRAFT_2448 0.74 -0.2 2,479,548 - EX28DRAFT_2448 0.79 +0.4 2,479,548 - EX28DRAFT_2448 0.79 -1.2 2,479,548 - EX28DRAFT_2448 0.79 +0.6 2,479,554 + EX28DRAFT_2448 0.80 +0.4 2,479,554 + EX28DRAFT_2448 0.80 +0.1 2,479,555 - EX28DRAFT_2448 0.80 +0.6 2,479,555 - EX28DRAFT_2448 0.80 +0.4 2,479,555 - EX28DRAFT_2448 0.80 +0.2 2,479,555 - EX28DRAFT_2448 0.80 +0.1 2,479,628 + +0.8 2,479,628 + +0.8 2,479,629 - +0.2 2,479,629 - +0.4 2,479,629 - -1.7 2,479,629 - +0.3 2,479,634 + -0.5 2,479,635 - +0.5 2,479,635 - -0.3 2,479,640 + +0.6 2,479,640 + +0.0 2,479,640 + +1.2 2,479,640 + +1.9 2,479,641 - +0.1 2,479,641 - -0.2 2,479,641 - -0.0 2,479,668 + -1.3 2,479,669 - +0.4 2,479,669 - +0.1 2,479,669 - +0.2 2,479,676 + +0.4 2,479,684 - +0.4 2,479,684 - +0.4 2,479,687 + +0.2 2,479,687 + +0.4 2,479,688 - +1.0 2,479,688 - +2.0 2,479,688 - +0.3 2,479,714 - -0.1 2,479,720 + +0.7 2,479,721 - +0.0 2,479,721 - +0.7 2,479,721 - -0.7 2,479,721 - +0.2 2,479,721 - +0.3 2,479,734 + +0.1 2,479,746 + +0.2 2,479,747 - +0.3 2,479,765 + -0.0 2,479,766 - +0.7 2,479,784 + +0.6 2,479,785 - -0.6 2,479,785 - +2.0 2,479,788 + +0.5 2,479,788 + +0.7 2,479,788 + -0.3 2,479,788 + -0.6 2,479,789 - -0.1 2,479,824 + +1.1 2,479,824 + -0.3 2,479,834 + +0.4 2,479,835 - +0.4 2,479,927 + -0.9
Or see this region's nucleotide sequence