Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2417 and EX28DRAFT_2418 overlap by 71 nucleotides EX28DRAFT_2418 and EX28DRAFT_2419 are separated by 9 nucleotides
EX28DRAFT_2417: EX28DRAFT_2417 - carboxylate-amine ligase, YbdK family, at 2,440,182 to 2,441,303
_2417
EX28DRAFT_2418: EX28DRAFT_2418 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,441,233 to 2,444,388
_2418
EX28DRAFT_2419: EX28DRAFT_2419 - RND family efflux transporter, MFP subunit, at 2,444,398 to 2,445,462
_2419
Position (kb)
2441
2442
2443
2444
2445 Strain fitness (log2 ratio)
-2
-1
0
1 at 2440.527 kb on + strand, within EX28DRAFT_2417 at 2440.527 kb on + strand, within EX28DRAFT_2417 at 2440.529 kb on + strand, within EX28DRAFT_2417 at 2440.530 kb on - strand, within EX28DRAFT_2417 at 2440.577 kb on - strand, within EX28DRAFT_2417 at 2440.626 kb on + strand, within EX28DRAFT_2417 at 2440.627 kb on - strand, within EX28DRAFT_2417 at 2440.665 kb on - strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.691 kb on + strand, within EX28DRAFT_2417 at 2440.692 kb on - strand, within EX28DRAFT_2417 at 2440.692 kb on - strand, within EX28DRAFT_2417 at 2440.907 kb on + strand, within EX28DRAFT_2417 at 2440.990 kb on - strand, within EX28DRAFT_2417 at 2440.991 kb on + strand, within EX28DRAFT_2417 at 2440.992 kb on - strand, within EX28DRAFT_2417 at 2441.195 kb on - strand at 2441.583 kb on + strand, within EX28DRAFT_2418 at 2441.621 kb on - strand, within EX28DRAFT_2418 at 2441.629 kb on + strand, within EX28DRAFT_2418 at 2441.640 kb on - strand, within EX28DRAFT_2418 at 2441.640 kb on - strand, within EX28DRAFT_2418 at 2441.846 kb on + strand, within EX28DRAFT_2418 at 2441.846 kb on + strand, within EX28DRAFT_2418 at 2441.963 kb on + strand, within EX28DRAFT_2418 at 2441.964 kb on - strand, within EX28DRAFT_2418 at 2441.964 kb on - strand, within EX28DRAFT_2418 at 2442.113 kb on + strand, within EX28DRAFT_2418 at 2442.114 kb on - strand, within EX28DRAFT_2418 at 2442.724 kb on - strand, within EX28DRAFT_2418 at 2442.724 kb on - strand, within EX28DRAFT_2418 at 2442.802 kb on + strand, within EX28DRAFT_2418 at 2442.802 kb on + strand, within EX28DRAFT_2418 at 2442.866 kb on + strand, within EX28DRAFT_2418 at 2443.192 kb on - strand, within EX28DRAFT_2418 at 2443.418 kb on + strand, within EX28DRAFT_2418 at 2443.419 kb on - strand, within EX28DRAFT_2418 at 2443.511 kb on + strand, within EX28DRAFT_2418 at 2443.524 kb on - strand, within EX28DRAFT_2418 at 2443.841 kb on + strand, within EX28DRAFT_2418 at 2443.919 kb on + strand, within EX28DRAFT_2418 at 2443.919 kb on + strand, within EX28DRAFT_2418 at 2443.919 kb on + strand, within EX28DRAFT_2418 at 2443.920 kb on - strand, within EX28DRAFT_2418 at 2443.920 kb on - strand, within EX28DRAFT_2418 at 2444.157 kb on + strand at 2444.157 kb on + strand at 2444.157 kb on + strand at 2444.158 kb on - strand at 2444.158 kb on - strand at 2444.158 kb on - strand at 2444.158 kb on - strand at 2444.159 kb on + strand at 2444.159 kb on + strand at 2444.159 kb on + strand at 2444.159 kb on + strand at 2444.159 kb on + strand at 2444.160 kb on - strand at 2444.160 kb on - strand at 2444.160 kb on - strand at 2444.160 kb on - strand at 2444.160 kb on - strand at 2444.160 kb on - strand at 2444.161 kb on + strand at 2444.161 kb on + strand at 2444.161 kb on + strand at 2444.161 kb on + strand at 2444.161 kb on + strand at 2444.161 kb on + strand at 2444.162 kb on - strand at 2444.162 kb on - strand at 2444.399 kb on + strand at 2444.484 kb on + strand at 2444.993 kb on + strand, within EX28DRAFT_2419 at 2444.993 kb on + strand, within EX28DRAFT_2419 at 2444.994 kb on - strand, within EX28DRAFT_2419 at 2445.109 kb on - strand, within EX28DRAFT_2419 at 2445.176 kb on - strand, within EX28DRAFT_2419 at 2445.176 kb on - strand, within EX28DRAFT_2419 at 2445.254 kb on + strand, within EX28DRAFT_2419 at 2445.254 kb on + strand, within EX28DRAFT_2419 at 2445.254 kb on + strand, within EX28DRAFT_2419
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,440,527 + EX28DRAFT_2417 0.31 -0.3 2,440,527 + EX28DRAFT_2417 0.31 -2.3 2,440,529 + EX28DRAFT_2417 0.31 +1.2 2,440,530 - EX28DRAFT_2417 0.31 -0.4 2,440,577 - EX28DRAFT_2417 0.35 -0.5 2,440,626 + EX28DRAFT_2417 0.40 -1.4 2,440,627 - EX28DRAFT_2417 0.40 -0.1 2,440,665 - EX28DRAFT_2417 0.43 +0.4 2,440,689 + EX28DRAFT_2417 0.45 -0.9 2,440,689 + EX28DRAFT_2417 0.45 -0.9 2,440,689 + EX28DRAFT_2417 0.45 -0.9 2,440,689 + EX28DRAFT_2417 0.45 -0.1 2,440,691 + EX28DRAFT_2417 0.45 +1.0 2,440,692 - EX28DRAFT_2417 0.45 -1.6 2,440,692 - EX28DRAFT_2417 0.45 +0.2 2,440,907 + EX28DRAFT_2417 0.65 +0.1 2,440,990 - EX28DRAFT_2417 0.72 +0.7 2,440,991 + EX28DRAFT_2417 0.72 +0.4 2,440,992 - EX28DRAFT_2417 0.72 -2.2 2,441,195 - +0.8 2,441,583 + EX28DRAFT_2418 0.11 +0.1 2,441,621 - EX28DRAFT_2418 0.12 +0.4 2,441,629 + EX28DRAFT_2418 0.13 +1.2 2,441,640 - EX28DRAFT_2418 0.13 +0.4 2,441,640 - EX28DRAFT_2418 0.13 +0.0 2,441,846 + EX28DRAFT_2418 0.19 +1.1 2,441,846 + EX28DRAFT_2418 0.19 -0.2 2,441,963 + EX28DRAFT_2418 0.23 -0.3 2,441,964 - EX28DRAFT_2418 0.23 +0.3 2,441,964 - EX28DRAFT_2418 0.23 -0.0 2,442,113 + EX28DRAFT_2418 0.28 +0.4 2,442,114 - EX28DRAFT_2418 0.28 +0.2 2,442,724 - EX28DRAFT_2418 0.47 +0.7 2,442,724 - EX28DRAFT_2418 0.47 -0.2 2,442,802 + EX28DRAFT_2418 0.50 +0.1 2,442,802 + EX28DRAFT_2418 0.50 +0.1 2,442,866 + EX28DRAFT_2418 0.52 +0.8 2,443,192 - EX28DRAFT_2418 0.62 +0.5 2,443,418 + EX28DRAFT_2418 0.69 +0.6 2,443,419 - EX28DRAFT_2418 0.69 -0.6 2,443,511 + EX28DRAFT_2418 0.72 -0.6 2,443,524 - EX28DRAFT_2418 0.73 -0.1 2,443,841 + EX28DRAFT_2418 0.83 -0.3 2,443,919 + EX28DRAFT_2418 0.85 +0.3 2,443,919 + EX28DRAFT_2418 0.85 +0.3 2,443,919 + EX28DRAFT_2418 0.85 -0.1 2,443,920 - EX28DRAFT_2418 0.85 +0.0 2,443,920 - EX28DRAFT_2418 0.85 -0.3 2,444,157 + +0.0 2,444,157 + +0.1 2,444,157 + +0.3 2,444,158 - +0.0 2,444,158 - -0.4 2,444,158 - -2.1 2,444,158 - +1.7 2,444,159 + -0.4 2,444,159 + +0.5 2,444,159 + +0.9 2,444,159 + +0.1 2,444,159 + +0.0 2,444,160 - -0.4 2,444,160 - +0.9 2,444,160 - +0.2 2,444,160 - +0.8 2,444,160 - -0.3 2,444,160 - -0.4 2,444,161 + +0.3 2,444,161 + +1.3 2,444,161 + +0.3 2,444,161 + -0.7 2,444,161 + +0.4 2,444,161 + -0.1 2,444,162 - +0.9 2,444,162 - -0.2 2,444,399 + +0.6 2,444,484 + -0.9 2,444,993 + EX28DRAFT_2419 0.56 -0.4 2,444,993 + EX28DRAFT_2419 0.56 +1.3 2,444,994 - EX28DRAFT_2419 0.56 -0.0 2,445,109 - EX28DRAFT_2419 0.67 +1.0 2,445,176 - EX28DRAFT_2419 0.73 -0.1 2,445,176 - EX28DRAFT_2419 0.73 +0.1 2,445,254 + EX28DRAFT_2419 0.80 +0.2 2,445,254 + EX28DRAFT_2419 0.80 -0.1 2,445,254 + EX28DRAFT_2419 0.80 -0.3
Or see this region's nucleotide sequence