Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2414

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2412 and EX28DRAFT_2413 overlap by 4 nucleotidesEX28DRAFT_2413 and EX28DRAFT_2414 overlap by 29 nucleotidesEX28DRAFT_2414 and EX28DRAFT_2415 are separated by 76 nucleotidesEX28DRAFT_2415 and EX28DRAFT_2416 overlap by 4 nucleotides EX28DRAFT_2412: EX28DRAFT_2412 - RND family efflux transporter, MFP subunit, at 2,435,268 to 2,436,131 _2412 EX28DRAFT_2413: EX28DRAFT_2413 - Protein of unknown function (DUF1656), at 2,436,128 to 2,436,364 _2413 EX28DRAFT_2414: EX28DRAFT_2414 - Predicted membrane protein, at 2,436,336 to 2,438,318 _2414 EX28DRAFT_2415: EX28DRAFT_2415 - AraC-type DNA-binding domain-containing proteins, at 2,438,395 to 2,439,189 _2415 EX28DRAFT_2416: EX28DRAFT_2416 - 2-dehydropantoate 2-reductase, at 2,439,186 to 2,440,076 _2416 Position (kb) 2436 2437 2438 2439Strain fitness (log2 ratio) -2 -1 0 1at 2435.548 kb on + strand, within EX28DRAFT_2412at 2435.592 kb on - strand, within EX28DRAFT_2412at 2435.592 kb on - strand, within EX28DRAFT_2412at 2435.625 kb on - strand, within EX28DRAFT_2412at 2435.630 kb on + strand, within EX28DRAFT_2412at 2435.722 kb on + strand, within EX28DRAFT_2412at 2435.722 kb on + strand, within EX28DRAFT_2412at 2435.722 kb on + strand, within EX28DRAFT_2412at 2435.723 kb on - strand, within EX28DRAFT_2412at 2435.764 kb on - strand, within EX28DRAFT_2412at 2435.883 kb on - strand, within EX28DRAFT_2412at 2435.905 kb on + strand, within EX28DRAFT_2412at 2435.905 kb on + strand, within EX28DRAFT_2412at 2435.905 kb on + strand, within EX28DRAFT_2412at 2435.906 kb on - strand, within EX28DRAFT_2412at 2436.037 kb on + strand, within EX28DRAFT_2412at 2436.053 kb on + strandat 2436.087 kb on + strandat 2436.087 kb on + strandat 2436.088 kb on - strandat 2436.401 kb on + strandat 2436.437 kb on + strandat 2436.850 kb on + strand, within EX28DRAFT_2414at 2436.851 kb on - strand, within EX28DRAFT_2414at 2436.905 kb on + strand, within EX28DRAFT_2414at 2436.905 kb on + strand, within EX28DRAFT_2414at 2436.949 kb on + strand, within EX28DRAFT_2414at 2437.016 kb on - strand, within EX28DRAFT_2414at 2437.104 kb on - strand, within EX28DRAFT_2414at 2437.220 kb on + strand, within EX28DRAFT_2414at 2437.296 kb on + strand, within EX28DRAFT_2414at 2437.359 kb on - strand, within EX28DRAFT_2414at 2437.649 kb on + strand, within EX28DRAFT_2414at 2437.649 kb on + strand, within EX28DRAFT_2414at 2437.650 kb on - strand, within EX28DRAFT_2414at 2437.650 kb on - strand, within EX28DRAFT_2414at 2437.722 kb on - strand, within EX28DRAFT_2414at 2437.774 kb on - strand, within EX28DRAFT_2414at 2437.816 kb on + strand, within EX28DRAFT_2414at 2437.816 kb on + strand, within EX28DRAFT_2414at 2437.817 kb on - strand, within EX28DRAFT_2414at 2438.001 kb on + strand, within EX28DRAFT_2414at 2438.002 kb on - strand, within EX28DRAFT_2414at 2438.002 kb on - strand, within EX28DRAFT_2414at 2438.042 kb on + strand, within EX28DRAFT_2414at 2438.156 kb on - strandat 2438.165 kb on + strandat 2438.166 kb on - strandat 2438.166 kb on - strandat 2438.209 kb on + strandat 2438.212 kb on + strandat 2438.213 kb on - strandat 2438.248 kb on + strandat 2438.248 kb on + strandat 2438.289 kb on - strandat 2438.289 kb on - strandat 2438.351 kb on - strandat 2438.378 kb on + strandat 2438.412 kb on + strandat 2438.413 kb on - strandat 2438.415 kb on + strandat 2438.422 kb on + strandat 2438.422 kb on + strandat 2438.423 kb on - strandat 2438.480 kb on - strand, within EX28DRAFT_2415at 2438.656 kb on + strand, within EX28DRAFT_2415at 2438.657 kb on - strand, within EX28DRAFT_2415at 2439.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,435,548 + EX28DRAFT_2412 0.32 +0.0
2,435,592 - EX28DRAFT_2412 0.38 -1.4
2,435,592 - EX28DRAFT_2412 0.38 -1.1
2,435,625 - EX28DRAFT_2412 0.41 -0.1
2,435,630 + EX28DRAFT_2412 0.42 -1.4
2,435,722 + EX28DRAFT_2412 0.53 -0.9
2,435,722 + EX28DRAFT_2412 0.53 -0.3
2,435,722 + EX28DRAFT_2412 0.53 -0.6
2,435,723 - EX28DRAFT_2412 0.53 -0.6
2,435,764 - EX28DRAFT_2412 0.57 +0.3
2,435,883 - EX28DRAFT_2412 0.71 +0.5
2,435,905 + EX28DRAFT_2412 0.74 +0.0
2,435,905 + EX28DRAFT_2412 0.74 -1.9
2,435,905 + EX28DRAFT_2412 0.74 +0.0
2,435,906 - EX28DRAFT_2412 0.74 -0.6
2,436,037 + EX28DRAFT_2412 0.89 +0.3
2,436,053 + -0.1
2,436,087 + +0.1
2,436,087 + +0.1
2,436,088 - +0.6
2,436,401 + -0.3
2,436,437 + +0.5
2,436,850 + EX28DRAFT_2414 0.26 -0.3
2,436,851 - EX28DRAFT_2414 0.26 -1.2
2,436,905 + EX28DRAFT_2414 0.29 -0.2
2,436,905 + EX28DRAFT_2414 0.29 +0.3
2,436,949 + EX28DRAFT_2414 0.31 +0.9
2,437,016 - EX28DRAFT_2414 0.34 -1.1
2,437,104 - EX28DRAFT_2414 0.39 -0.2
2,437,220 + EX28DRAFT_2414 0.45 +0.1
2,437,296 + EX28DRAFT_2414 0.48 -0.7
2,437,359 - EX28DRAFT_2414 0.52 -0.6
2,437,649 + EX28DRAFT_2414 0.66 -0.1
2,437,649 + EX28DRAFT_2414 0.66 -0.7
2,437,650 - EX28DRAFT_2414 0.66 +0.0
2,437,650 - EX28DRAFT_2414 0.66 -0.2
2,437,722 - EX28DRAFT_2414 0.70 -0.2
2,437,774 - EX28DRAFT_2414 0.73 -0.1
2,437,816 + EX28DRAFT_2414 0.75 +0.7
2,437,816 + EX28DRAFT_2414 0.75 +0.8
2,437,817 - EX28DRAFT_2414 0.75 -0.2
2,438,001 + EX28DRAFT_2414 0.84 -0.2
2,438,002 - EX28DRAFT_2414 0.84 +0.3
2,438,002 - EX28DRAFT_2414 0.84 +0.4
2,438,042 + EX28DRAFT_2414 0.86 -0.1
2,438,156 - -0.3
2,438,165 + -0.1
2,438,166 - +0.2
2,438,166 - +0.0
2,438,209 + -0.4
2,438,212 + +0.2
2,438,213 - +0.1
2,438,248 + +0.4
2,438,248 + +0.1
2,438,289 - -0.4
2,438,289 - -0.1
2,438,351 - -0.1
2,438,378 + -0.2
2,438,412 + -0.3
2,438,413 - +0.1
2,438,415 + +0.4
2,438,422 + +0.2
2,438,422 + -0.3
2,438,423 - +0.1
2,438,480 - EX28DRAFT_2415 0.11 +0.1
2,438,656 + EX28DRAFT_2415 0.33 +0.0
2,438,657 - EX28DRAFT_2415 0.33 +0.2
2,439,158 - -0.0

Or see this region's nucleotide sequence