Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2412 and EX28DRAFT_2413 overlap by 4 nucleotides EX28DRAFT_2413 and EX28DRAFT_2414 overlap by 29 nucleotides EX28DRAFT_2414 and EX28DRAFT_2415 are separated by 76 nucleotides EX28DRAFT_2415 and EX28DRAFT_2416 overlap by 4 nucleotides
EX28DRAFT_2412: EX28DRAFT_2412 - RND family efflux transporter, MFP subunit, at 2,435,268 to 2,436,131
_2412
EX28DRAFT_2413: EX28DRAFT_2413 - Protein of unknown function (DUF1656), at 2,436,128 to 2,436,364
_2413
EX28DRAFT_2414: EX28DRAFT_2414 - Predicted membrane protein, at 2,436,336 to 2,438,318
_2414
EX28DRAFT_2415: EX28DRAFT_2415 - AraC-type DNA-binding domain-containing proteins, at 2,438,395 to 2,439,189
_2415
EX28DRAFT_2416: EX28DRAFT_2416 - 2-dehydropantoate 2-reductase, at 2,439,186 to 2,440,076
_2416
Position (kb)
2436
2437
2438
2439 Strain fitness (log2 ratio)
-2
-1
0
1 at 2435.548 kb on + strand, within EX28DRAFT_2412 at 2435.592 kb on - strand, within EX28DRAFT_2412 at 2435.592 kb on - strand, within EX28DRAFT_2412 at 2435.625 kb on - strand, within EX28DRAFT_2412 at 2435.630 kb on + strand, within EX28DRAFT_2412 at 2435.722 kb on + strand, within EX28DRAFT_2412 at 2435.722 kb on + strand, within EX28DRAFT_2412 at 2435.722 kb on + strand, within EX28DRAFT_2412 at 2435.723 kb on - strand, within EX28DRAFT_2412 at 2435.764 kb on - strand, within EX28DRAFT_2412 at 2435.883 kb on - strand, within EX28DRAFT_2412 at 2435.905 kb on + strand, within EX28DRAFT_2412 at 2435.905 kb on + strand, within EX28DRAFT_2412 at 2435.905 kb on + strand, within EX28DRAFT_2412 at 2435.906 kb on - strand, within EX28DRAFT_2412 at 2436.037 kb on + strand, within EX28DRAFT_2412 at 2436.053 kb on + strand at 2436.087 kb on + strand at 2436.087 kb on + strand at 2436.088 kb on - strand at 2436.401 kb on + strand at 2436.437 kb on + strand at 2436.850 kb on + strand, within EX28DRAFT_2414 at 2436.851 kb on - strand, within EX28DRAFT_2414 at 2436.905 kb on + strand, within EX28DRAFT_2414 at 2436.905 kb on + strand, within EX28DRAFT_2414 at 2436.949 kb on + strand, within EX28DRAFT_2414 at 2437.016 kb on - strand, within EX28DRAFT_2414 at 2437.104 kb on - strand, within EX28DRAFT_2414 at 2437.220 kb on + strand, within EX28DRAFT_2414 at 2437.296 kb on + strand, within EX28DRAFT_2414 at 2437.359 kb on - strand, within EX28DRAFT_2414 at 2437.649 kb on + strand, within EX28DRAFT_2414 at 2437.649 kb on + strand, within EX28DRAFT_2414 at 2437.650 kb on - strand, within EX28DRAFT_2414 at 2437.650 kb on - strand, within EX28DRAFT_2414 at 2437.722 kb on - strand, within EX28DRAFT_2414 at 2437.774 kb on - strand, within EX28DRAFT_2414 at 2437.816 kb on + strand, within EX28DRAFT_2414 at 2437.816 kb on + strand, within EX28DRAFT_2414 at 2437.817 kb on - strand, within EX28DRAFT_2414 at 2438.001 kb on + strand, within EX28DRAFT_2414 at 2438.002 kb on - strand, within EX28DRAFT_2414 at 2438.002 kb on - strand, within EX28DRAFT_2414 at 2438.042 kb on + strand, within EX28DRAFT_2414 at 2438.156 kb on - strand at 2438.165 kb on + strand at 2438.166 kb on - strand at 2438.166 kb on - strand at 2438.209 kb on + strand at 2438.212 kb on + strand at 2438.213 kb on - strand at 2438.248 kb on + strand at 2438.248 kb on + strand at 2438.289 kb on - strand at 2438.289 kb on - strand at 2438.351 kb on - strand at 2438.378 kb on + strand at 2438.412 kb on + strand at 2438.413 kb on - strand at 2438.415 kb on + strand at 2438.422 kb on + strand at 2438.422 kb on + strand at 2438.423 kb on - strand at 2438.480 kb on - strand, within EX28DRAFT_2415 at 2438.656 kb on + strand, within EX28DRAFT_2415 at 2438.657 kb on - strand, within EX28DRAFT_2415 at 2439.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,435,548 + EX28DRAFT_2412 0.32 +0.0 2,435,592 - EX28DRAFT_2412 0.38 -1.4 2,435,592 - EX28DRAFT_2412 0.38 -1.1 2,435,625 - EX28DRAFT_2412 0.41 -0.1 2,435,630 + EX28DRAFT_2412 0.42 -1.4 2,435,722 + EX28DRAFT_2412 0.53 -0.9 2,435,722 + EX28DRAFT_2412 0.53 -0.3 2,435,722 + EX28DRAFT_2412 0.53 -0.6 2,435,723 - EX28DRAFT_2412 0.53 -0.6 2,435,764 - EX28DRAFT_2412 0.57 +0.3 2,435,883 - EX28DRAFT_2412 0.71 +0.5 2,435,905 + EX28DRAFT_2412 0.74 +0.0 2,435,905 + EX28DRAFT_2412 0.74 -1.9 2,435,905 + EX28DRAFT_2412 0.74 +0.0 2,435,906 - EX28DRAFT_2412 0.74 -0.6 2,436,037 + EX28DRAFT_2412 0.89 +0.3 2,436,053 + -0.1 2,436,087 + +0.1 2,436,087 + +0.1 2,436,088 - +0.6 2,436,401 + -0.3 2,436,437 + +0.5 2,436,850 + EX28DRAFT_2414 0.26 -0.3 2,436,851 - EX28DRAFT_2414 0.26 -1.2 2,436,905 + EX28DRAFT_2414 0.29 -0.2 2,436,905 + EX28DRAFT_2414 0.29 +0.3 2,436,949 + EX28DRAFT_2414 0.31 +0.9 2,437,016 - EX28DRAFT_2414 0.34 -1.1 2,437,104 - EX28DRAFT_2414 0.39 -0.2 2,437,220 + EX28DRAFT_2414 0.45 +0.1 2,437,296 + EX28DRAFT_2414 0.48 -0.7 2,437,359 - EX28DRAFT_2414 0.52 -0.6 2,437,649 + EX28DRAFT_2414 0.66 -0.1 2,437,649 + EX28DRAFT_2414 0.66 -0.7 2,437,650 - EX28DRAFT_2414 0.66 +0.0 2,437,650 - EX28DRAFT_2414 0.66 -0.2 2,437,722 - EX28DRAFT_2414 0.70 -0.2 2,437,774 - EX28DRAFT_2414 0.73 -0.1 2,437,816 + EX28DRAFT_2414 0.75 +0.7 2,437,816 + EX28DRAFT_2414 0.75 +0.8 2,437,817 - EX28DRAFT_2414 0.75 -0.2 2,438,001 + EX28DRAFT_2414 0.84 -0.2 2,438,002 - EX28DRAFT_2414 0.84 +0.3 2,438,002 - EX28DRAFT_2414 0.84 +0.4 2,438,042 + EX28DRAFT_2414 0.86 -0.1 2,438,156 - -0.3 2,438,165 + -0.1 2,438,166 - +0.2 2,438,166 - +0.0 2,438,209 + -0.4 2,438,212 + +0.2 2,438,213 - +0.1 2,438,248 + +0.4 2,438,248 + +0.1 2,438,289 - -0.4 2,438,289 - -0.1 2,438,351 - -0.1 2,438,378 + -0.2 2,438,412 + -0.3 2,438,413 - +0.1 2,438,415 + +0.4 2,438,422 + +0.2 2,438,422 + -0.3 2,438,423 - +0.1 2,438,480 - EX28DRAFT_2415 0.11 +0.1 2,438,656 + EX28DRAFT_2415 0.33 +0.0 2,438,657 - EX28DRAFT_2415 0.33 +0.2 2,439,158 - -0.0
Or see this region's nucleotide sequence