Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2412

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2410 and EX28DRAFT_2411 are separated by 167 nucleotidesEX28DRAFT_2411 and EX28DRAFT_2412 are separated by 112 nucleotidesEX28DRAFT_2412 and EX28DRAFT_2413 overlap by 4 nucleotidesEX28DRAFT_2413 and EX28DRAFT_2414 overlap by 29 nucleotides EX28DRAFT_2410: EX28DRAFT_2410 - hypothetical protein, at 2,434,149 to 2,434,604 _2410 EX28DRAFT_2411: EX28DRAFT_2411 - hypothetical protein, at 2,434,772 to 2,435,155 _2411 EX28DRAFT_2412: EX28DRAFT_2412 - RND family efflux transporter, MFP subunit, at 2,435,268 to 2,436,131 _2412 EX28DRAFT_2413: EX28DRAFT_2413 - Protein of unknown function (DUF1656), at 2,436,128 to 2,436,364 _2413 EX28DRAFT_2414: EX28DRAFT_2414 - Predicted membrane protein, at 2,436,336 to 2,438,318 _2414 Position (kb) 2435 2436 2437Strain fitness (log2 ratio) -2 -1 0 1at 2434.269 kb on + strand, within EX28DRAFT_2410at 2434.270 kb on - strand, within EX28DRAFT_2410at 2434.270 kb on - strand, within EX28DRAFT_2410at 2434.273 kb on + strand, within EX28DRAFT_2410at 2434.273 kb on + strand, within EX28DRAFT_2410at 2434.273 kb on + strand, within EX28DRAFT_2410at 2434.323 kb on - strand, within EX28DRAFT_2410at 2434.551 kb on - strand, within EX28DRAFT_2410at 2434.551 kb on - strand, within EX28DRAFT_2410at 2434.551 kb on - strand, within EX28DRAFT_2410at 2434.551 kb on - strand, within EX28DRAFT_2410at 2434.552 kb on + strand, within EX28DRAFT_2410at 2434.552 kb on + strand, within EX28DRAFT_2410at 2434.552 kb on + strand, within EX28DRAFT_2410at 2434.553 kb on - strand, within EX28DRAFT_2410at 2434.587 kb on + strandat 2434.587 kb on + strandat 2434.588 kb on - strandat 2434.588 kb on - strandat 2434.588 kb on - strandat 2434.588 kb on - strandat 2434.589 kb on + strandat 2434.716 kb on - strandat 2434.744 kb on + strandat 2434.798 kb on + strandat 2434.799 kb on - strandat 2434.817 kb on + strand, within EX28DRAFT_2411at 2434.915 kb on + strand, within EX28DRAFT_2411at 2435.033 kb on + strand, within EX28DRAFT_2411at 2435.033 kb on + strand, within EX28DRAFT_2411at 2435.170 kb on - strandat 2435.170 kb on - strandat 2435.200 kb on + strandat 2435.200 kb on + strandat 2435.201 kb on - strandat 2435.201 kb on - strandat 2435.201 kb on - strandat 2435.248 kb on - strandat 2435.258 kb on - strandat 2435.548 kb on + strand, within EX28DRAFT_2412at 2435.592 kb on - strand, within EX28DRAFT_2412at 2435.592 kb on - strand, within EX28DRAFT_2412at 2435.625 kb on - strand, within EX28DRAFT_2412at 2435.630 kb on + strand, within EX28DRAFT_2412at 2435.722 kb on + strand, within EX28DRAFT_2412at 2435.722 kb on + strand, within EX28DRAFT_2412at 2435.722 kb on + strand, within EX28DRAFT_2412at 2435.723 kb on - strand, within EX28DRAFT_2412at 2435.764 kb on - strand, within EX28DRAFT_2412at 2435.883 kb on - strand, within EX28DRAFT_2412at 2435.905 kb on + strand, within EX28DRAFT_2412at 2435.905 kb on + strand, within EX28DRAFT_2412at 2435.905 kb on + strand, within EX28DRAFT_2412at 2435.906 kb on - strand, within EX28DRAFT_2412at 2436.037 kb on + strand, within EX28DRAFT_2412at 2436.053 kb on + strandat 2436.087 kb on + strandat 2436.087 kb on + strandat 2436.088 kb on - strandat 2436.401 kb on + strandat 2436.437 kb on + strandat 2436.850 kb on + strand, within EX28DRAFT_2414at 2436.851 kb on - strand, within EX28DRAFT_2414at 2436.905 kb on + strand, within EX28DRAFT_2414at 2436.905 kb on + strand, within EX28DRAFT_2414at 2436.949 kb on + strand, within EX28DRAFT_2414at 2437.016 kb on - strand, within EX28DRAFT_2414at 2437.104 kb on - strand, within EX28DRAFT_2414

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,434,269 + EX28DRAFT_2410 0.26 +0.5
2,434,270 - EX28DRAFT_2410 0.27 +0.2
2,434,270 - EX28DRAFT_2410 0.27 +0.3
2,434,273 + EX28DRAFT_2410 0.27 -0.1
2,434,273 + EX28DRAFT_2410 0.27 -0.8
2,434,273 + EX28DRAFT_2410 0.27 -0.0
2,434,323 - EX28DRAFT_2410 0.38 -0.5
2,434,551 - EX28DRAFT_2410 0.88 -0.1
2,434,551 - EX28DRAFT_2410 0.88 -0.6
2,434,551 - EX28DRAFT_2410 0.88 +0.7
2,434,551 - EX28DRAFT_2410 0.88 +0.1
2,434,552 + EX28DRAFT_2410 0.88 -0.8
2,434,552 + EX28DRAFT_2410 0.88 +0.0
2,434,552 + EX28DRAFT_2410 0.88 -0.5
2,434,553 - EX28DRAFT_2410 0.89 -0.1
2,434,587 + +1.0
2,434,587 + -0.1
2,434,588 - -1.8
2,434,588 - -0.1
2,434,588 - +0.2
2,434,588 - -0.5
2,434,589 + -0.5
2,434,716 - +0.2
2,434,744 + +0.7
2,434,798 + +0.1
2,434,799 - -0.5
2,434,817 + EX28DRAFT_2411 0.12 -2.4
2,434,915 + EX28DRAFT_2411 0.37 +0.2
2,435,033 + EX28DRAFT_2411 0.68 -0.8
2,435,033 + EX28DRAFT_2411 0.68 +0.0
2,435,170 - -0.4
2,435,170 - -0.4
2,435,200 + -0.0
2,435,200 + +0.0
2,435,201 - -0.1
2,435,201 - -0.1
2,435,201 - +0.1
2,435,248 - -0.1
2,435,258 - +0.1
2,435,548 + EX28DRAFT_2412 0.32 +0.0
2,435,592 - EX28DRAFT_2412 0.38 -1.4
2,435,592 - EX28DRAFT_2412 0.38 -1.1
2,435,625 - EX28DRAFT_2412 0.41 -0.1
2,435,630 + EX28DRAFT_2412 0.42 -1.4
2,435,722 + EX28DRAFT_2412 0.53 -0.9
2,435,722 + EX28DRAFT_2412 0.53 -0.3
2,435,722 + EX28DRAFT_2412 0.53 -0.6
2,435,723 - EX28DRAFT_2412 0.53 -0.6
2,435,764 - EX28DRAFT_2412 0.57 +0.3
2,435,883 - EX28DRAFT_2412 0.71 +0.5
2,435,905 + EX28DRAFT_2412 0.74 +0.0
2,435,905 + EX28DRAFT_2412 0.74 -1.9
2,435,905 + EX28DRAFT_2412 0.74 +0.0
2,435,906 - EX28DRAFT_2412 0.74 -0.6
2,436,037 + EX28DRAFT_2412 0.89 +0.3
2,436,053 + -0.1
2,436,087 + +0.1
2,436,087 + +0.1
2,436,088 - +0.6
2,436,401 + -0.3
2,436,437 + +0.5
2,436,850 + EX28DRAFT_2414 0.26 -0.3
2,436,851 - EX28DRAFT_2414 0.26 -1.2
2,436,905 + EX28DRAFT_2414 0.29 -0.2
2,436,905 + EX28DRAFT_2414 0.29 +0.3
2,436,949 + EX28DRAFT_2414 0.31 +0.9
2,437,016 - EX28DRAFT_2414 0.34 -1.1
2,437,104 - EX28DRAFT_2414 0.39 -0.2

Or see this region's nucleotide sequence