Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2402 and EX28DRAFT_2403 are separated by 13 nucleotides EX28DRAFT_2403 and EX28DRAFT_2404 are separated by 105 nucleotides EX28DRAFT_2404 and EX28DRAFT_2405 are separated by 74 nucleotides EX28DRAFT_2405 and EX28DRAFT_2406 are separated by 75 nucleotides
EX28DRAFT_2402: EX28DRAFT_2402 - acetolactate synthase, large subunit (EC 2.2.1.6), at 2,427,399 to 2,429,078
_2402
EX28DRAFT_2403: EX28DRAFT_2403 - alpha-acetolactate decarboxylase, at 2,429,092 to 2,429,871
_2403
EX28DRAFT_2404: EX28DRAFT_2404 - Transcriptional regulator, at 2,429,977 to 2,430,858
_2404
EX28DRAFT_2405: EX28DRAFT_2405 - Mannose-6-phosphate isomerase, at 2,430,933 to 2,431,295
_2405
EX28DRAFT_2406: EX28DRAFT_2406 - AraC-type DNA-binding domain-containing proteins, at 2,431,371 to 2,432,189
_2406
Position (kb)
2429
2430
2431 Strain fitness (log2 ratio)
-1
0
1
2 at 2429.094 kb on - strand at 2429.640 kb on - strand, within EX28DRAFT_2403 at 2429.755 kb on + strand, within EX28DRAFT_2403 at 2429.770 kb on + strand, within EX28DRAFT_2403 at 2429.894 kb on - strand at 2429.945 kb on + strand at 2429.946 kb on - strand at 2429.972 kb on + strand at 2429.972 kb on + strand at 2429.972 kb on + strand at 2429.973 kb on - strand at 2430.121 kb on - strand, within EX28DRAFT_2404 at 2430.170 kb on - strand, within EX28DRAFT_2404 at 2430.363 kb on + strand, within EX28DRAFT_2404 at 2430.363 kb on + strand, within EX28DRAFT_2404 at 2430.364 kb on - strand, within EX28DRAFT_2404 at 2430.364 kb on - strand, within EX28DRAFT_2404 at 2430.776 kb on - strand at 2430.865 kb on + strand at 2430.921 kb on + strand at 2431.005 kb on + strand, within EX28DRAFT_2405 at 2431.006 kb on - strand, within EX28DRAFT_2405 at 2431.006 kb on - strand, within EX28DRAFT_2405 at 2431.006 kb on - strand, within EX28DRAFT_2405 at 2431.006 kb on - strand, within EX28DRAFT_2405 at 2431.020 kb on + strand, within EX28DRAFT_2405 at 2431.043 kb on + strand, within EX28DRAFT_2405 at 2431.043 kb on + strand, within EX28DRAFT_2405 at 2431.044 kb on - strand, within EX28DRAFT_2405 at 2431.044 kb on - strand, within EX28DRAFT_2405 at 2431.069 kb on + strand, within EX28DRAFT_2405 at 2431.070 kb on - strand, within EX28DRAFT_2405 at 2431.116 kb on - strand, within EX28DRAFT_2405 at 2431.119 kb on + strand, within EX28DRAFT_2405 at 2431.175 kb on + strand, within EX28DRAFT_2405 at 2431.175 kb on + strand, within EX28DRAFT_2405 at 2431.176 kb on - strand, within EX28DRAFT_2405 at 2431.176 kb on - strand, within EX28DRAFT_2405 at 2431.203 kb on - strand, within EX28DRAFT_2405 at 2431.210 kb on + strand, within EX28DRAFT_2405 at 2431.268 kb on + strand at 2431.289 kb on + strand at 2431.291 kb on + strand at 2431.291 kb on + strand at 2431.291 kb on + strand at 2431.291 kb on + strand at 2431.292 kb on - strand at 2431.292 kb on - strand at 2431.308 kb on + strand at 2431.308 kb on + strand at 2431.308 kb on + strand at 2431.330 kb on + strand at 2431.331 kb on - strand at 2431.550 kb on - strand, within EX28DRAFT_2406 at 2431.571 kb on - strand, within EX28DRAFT_2406 at 2431.665 kb on + strand, within EX28DRAFT_2406 at 2431.665 kb on + strand, within EX28DRAFT_2406 at 2431.665 kb on + strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.666 kb on - strand, within EX28DRAFT_2406 at 2431.667 kb on + strand, within EX28DRAFT_2406 at 2431.667 kb on + strand, within EX28DRAFT_2406 at 2431.667 kb on + strand, within EX28DRAFT_2406 at 2431.668 kb on - strand, within EX28DRAFT_2406 at 2431.668 kb on - strand, within EX28DRAFT_2406 at 2431.668 kb on - strand, within EX28DRAFT_2406 at 2431.670 kb on - strand, within EX28DRAFT_2406 at 2431.670 kb on - strand, within EX28DRAFT_2406 at 2431.696 kb on + strand, within EX28DRAFT_2406 at 2431.810 kb on - strand, within EX28DRAFT_2406
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,429,094 - +0.8 2,429,640 - EX28DRAFT_2403 0.70 +0.6 2,429,755 + EX28DRAFT_2403 0.85 -0.2 2,429,770 + EX28DRAFT_2403 0.87 +0.0 2,429,894 - -0.5 2,429,945 + +0.0 2,429,946 - +0.2 2,429,972 + -1.1 2,429,972 + +0.8 2,429,972 + -0.0 2,429,973 - +0.2 2,430,121 - EX28DRAFT_2404 0.16 -0.1 2,430,170 - EX28DRAFT_2404 0.22 +0.9 2,430,363 + EX28DRAFT_2404 0.44 -0.5 2,430,363 + EX28DRAFT_2404 0.44 +0.4 2,430,364 - EX28DRAFT_2404 0.44 +0.8 2,430,364 - EX28DRAFT_2404 0.44 +0.2 2,430,776 - +0.3 2,430,865 + -0.3 2,430,921 + -0.4 2,431,005 + EX28DRAFT_2405 0.20 +0.7 2,431,006 - EX28DRAFT_2405 0.20 -0.2 2,431,006 - EX28DRAFT_2405 0.20 -0.4 2,431,006 - EX28DRAFT_2405 0.20 +0.4 2,431,006 - EX28DRAFT_2405 0.20 -0.1 2,431,020 + EX28DRAFT_2405 0.24 +0.0 2,431,043 + EX28DRAFT_2405 0.30 +0.2 2,431,043 + EX28DRAFT_2405 0.30 -1.0 2,431,044 - EX28DRAFT_2405 0.31 -0.0 2,431,044 - EX28DRAFT_2405 0.31 -0.2 2,431,069 + EX28DRAFT_2405 0.37 +0.5 2,431,070 - EX28DRAFT_2405 0.38 -0.1 2,431,116 - EX28DRAFT_2405 0.50 +0.3 2,431,119 + EX28DRAFT_2405 0.51 -0.1 2,431,175 + EX28DRAFT_2405 0.67 -0.3 2,431,175 + EX28DRAFT_2405 0.67 -0.0 2,431,176 - EX28DRAFT_2405 0.67 +0.2 2,431,176 - EX28DRAFT_2405 0.67 -1.0 2,431,203 - EX28DRAFT_2405 0.74 -0.5 2,431,210 + EX28DRAFT_2405 0.76 +0.0 2,431,268 + +0.1 2,431,289 + -0.1 2,431,291 + +0.2 2,431,291 + -0.9 2,431,291 + -0.4 2,431,291 + +0.7 2,431,292 - +2.2 2,431,292 - -0.2 2,431,308 + +0.3 2,431,308 + -0.3 2,431,308 + -0.5 2,431,330 + -0.8 2,431,331 - +1.2 2,431,550 - EX28DRAFT_2406 0.22 +0.3 2,431,571 - EX28DRAFT_2406 0.24 +0.4 2,431,665 + EX28DRAFT_2406 0.36 +0.4 2,431,665 + EX28DRAFT_2406 0.36 -0.4 2,431,665 + EX28DRAFT_2406 0.36 +0.4 2,431,666 - EX28DRAFT_2406 0.36 -0.4 2,431,666 - EX28DRAFT_2406 0.36 +0.0 2,431,666 - EX28DRAFT_2406 0.36 -0.2 2,431,666 - EX28DRAFT_2406 0.36 -0.3 2,431,666 - EX28DRAFT_2406 0.36 -0.4 2,431,667 + EX28DRAFT_2406 0.36 -0.2 2,431,667 + EX28DRAFT_2406 0.36 +0.4 2,431,667 + EX28DRAFT_2406 0.36 -0.1 2,431,668 - EX28DRAFT_2406 0.36 -0.6 2,431,668 - EX28DRAFT_2406 0.36 -0.1 2,431,668 - EX28DRAFT_2406 0.36 +0.0 2,431,670 - EX28DRAFT_2406 0.37 +1.6 2,431,670 - EX28DRAFT_2406 0.37 +0.6 2,431,696 + EX28DRAFT_2406 0.40 -1.1 2,431,810 - EX28DRAFT_2406 0.54 -0.5
Or see this region's nucleotide sequence