Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2404

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2402 and EX28DRAFT_2403 are separated by 13 nucleotidesEX28DRAFT_2403 and EX28DRAFT_2404 are separated by 105 nucleotidesEX28DRAFT_2404 and EX28DRAFT_2405 are separated by 74 nucleotidesEX28DRAFT_2405 and EX28DRAFT_2406 are separated by 75 nucleotides EX28DRAFT_2402: EX28DRAFT_2402 - acetolactate synthase, large subunit (EC 2.2.1.6), at 2,427,399 to 2,429,078 _2402 EX28DRAFT_2403: EX28DRAFT_2403 - alpha-acetolactate decarboxylase, at 2,429,092 to 2,429,871 _2403 EX28DRAFT_2404: EX28DRAFT_2404 - Transcriptional regulator, at 2,429,977 to 2,430,858 _2404 EX28DRAFT_2405: EX28DRAFT_2405 - Mannose-6-phosphate isomerase, at 2,430,933 to 2,431,295 _2405 EX28DRAFT_2406: EX28DRAFT_2406 - AraC-type DNA-binding domain-containing proteins, at 2,431,371 to 2,432,189 _2406 Position (kb) 2429 2430 2431Strain fitness (log2 ratio) -1 0 1 2at 2429.094 kb on - strandat 2429.640 kb on - strand, within EX28DRAFT_2403at 2429.755 kb on + strand, within EX28DRAFT_2403at 2429.770 kb on + strand, within EX28DRAFT_2403at 2429.894 kb on - strandat 2429.945 kb on + strandat 2429.946 kb on - strandat 2429.972 kb on + strandat 2429.972 kb on + strandat 2429.972 kb on + strandat 2429.973 kb on - strandat 2430.121 kb on - strand, within EX28DRAFT_2404at 2430.170 kb on - strand, within EX28DRAFT_2404at 2430.363 kb on + strand, within EX28DRAFT_2404at 2430.363 kb on + strand, within EX28DRAFT_2404at 2430.364 kb on - strand, within EX28DRAFT_2404at 2430.364 kb on - strand, within EX28DRAFT_2404at 2430.776 kb on - strandat 2430.865 kb on + strandat 2430.921 kb on + strandat 2431.005 kb on + strand, within EX28DRAFT_2405at 2431.006 kb on - strand, within EX28DRAFT_2405at 2431.006 kb on - strand, within EX28DRAFT_2405at 2431.006 kb on - strand, within EX28DRAFT_2405at 2431.006 kb on - strand, within EX28DRAFT_2405at 2431.020 kb on + strand, within EX28DRAFT_2405at 2431.043 kb on + strand, within EX28DRAFT_2405at 2431.043 kb on + strand, within EX28DRAFT_2405at 2431.044 kb on - strand, within EX28DRAFT_2405at 2431.044 kb on - strand, within EX28DRAFT_2405at 2431.069 kb on + strand, within EX28DRAFT_2405at 2431.070 kb on - strand, within EX28DRAFT_2405at 2431.116 kb on - strand, within EX28DRAFT_2405at 2431.119 kb on + strand, within EX28DRAFT_2405at 2431.175 kb on + strand, within EX28DRAFT_2405at 2431.175 kb on + strand, within EX28DRAFT_2405at 2431.176 kb on - strand, within EX28DRAFT_2405at 2431.176 kb on - strand, within EX28DRAFT_2405at 2431.203 kb on - strand, within EX28DRAFT_2405at 2431.210 kb on + strand, within EX28DRAFT_2405at 2431.268 kb on + strandat 2431.289 kb on + strandat 2431.291 kb on + strandat 2431.291 kb on + strandat 2431.291 kb on + strandat 2431.291 kb on + strandat 2431.292 kb on - strandat 2431.292 kb on - strandat 2431.308 kb on + strandat 2431.308 kb on + strandat 2431.308 kb on + strandat 2431.330 kb on + strandat 2431.331 kb on - strandat 2431.550 kb on - strand, within EX28DRAFT_2406at 2431.571 kb on - strand, within EX28DRAFT_2406at 2431.665 kb on + strand, within EX28DRAFT_2406at 2431.665 kb on + strand, within EX28DRAFT_2406at 2431.665 kb on + strand, within EX28DRAFT_2406at 2431.666 kb on - strand, within EX28DRAFT_2406at 2431.666 kb on - strand, within EX28DRAFT_2406at 2431.666 kb on - strand, within EX28DRAFT_2406at 2431.666 kb on - strand, within EX28DRAFT_2406at 2431.666 kb on - strand, within EX28DRAFT_2406at 2431.667 kb on + strand, within EX28DRAFT_2406at 2431.667 kb on + strand, within EX28DRAFT_2406at 2431.667 kb on + strand, within EX28DRAFT_2406at 2431.668 kb on - strand, within EX28DRAFT_2406at 2431.668 kb on - strand, within EX28DRAFT_2406at 2431.668 kb on - strand, within EX28DRAFT_2406at 2431.670 kb on - strand, within EX28DRAFT_2406at 2431.670 kb on - strand, within EX28DRAFT_2406at 2431.696 kb on + strand, within EX28DRAFT_2406at 2431.810 kb on - strand, within EX28DRAFT_2406

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,429,094 - +0.8
2,429,640 - EX28DRAFT_2403 0.70 +0.6
2,429,755 + EX28DRAFT_2403 0.85 -0.2
2,429,770 + EX28DRAFT_2403 0.87 +0.0
2,429,894 - -0.5
2,429,945 + +0.0
2,429,946 - +0.2
2,429,972 + -1.1
2,429,972 + +0.8
2,429,972 + -0.0
2,429,973 - +0.2
2,430,121 - EX28DRAFT_2404 0.16 -0.1
2,430,170 - EX28DRAFT_2404 0.22 +0.9
2,430,363 + EX28DRAFT_2404 0.44 -0.5
2,430,363 + EX28DRAFT_2404 0.44 +0.4
2,430,364 - EX28DRAFT_2404 0.44 +0.8
2,430,364 - EX28DRAFT_2404 0.44 +0.2
2,430,776 - +0.3
2,430,865 + -0.3
2,430,921 + -0.4
2,431,005 + EX28DRAFT_2405 0.20 +0.7
2,431,006 - EX28DRAFT_2405 0.20 -0.2
2,431,006 - EX28DRAFT_2405 0.20 -0.4
2,431,006 - EX28DRAFT_2405 0.20 +0.4
2,431,006 - EX28DRAFT_2405 0.20 -0.1
2,431,020 + EX28DRAFT_2405 0.24 +0.0
2,431,043 + EX28DRAFT_2405 0.30 +0.2
2,431,043 + EX28DRAFT_2405 0.30 -1.0
2,431,044 - EX28DRAFT_2405 0.31 -0.0
2,431,044 - EX28DRAFT_2405 0.31 -0.2
2,431,069 + EX28DRAFT_2405 0.37 +0.5
2,431,070 - EX28DRAFT_2405 0.38 -0.1
2,431,116 - EX28DRAFT_2405 0.50 +0.3
2,431,119 + EX28DRAFT_2405 0.51 -0.1
2,431,175 + EX28DRAFT_2405 0.67 -0.3
2,431,175 + EX28DRAFT_2405 0.67 -0.0
2,431,176 - EX28DRAFT_2405 0.67 +0.2
2,431,176 - EX28DRAFT_2405 0.67 -1.0
2,431,203 - EX28DRAFT_2405 0.74 -0.5
2,431,210 + EX28DRAFT_2405 0.76 +0.0
2,431,268 + +0.1
2,431,289 + -0.1
2,431,291 + +0.2
2,431,291 + -0.9
2,431,291 + -0.4
2,431,291 + +0.7
2,431,292 - +2.2
2,431,292 - -0.2
2,431,308 + +0.3
2,431,308 + -0.3
2,431,308 + -0.5
2,431,330 + -0.8
2,431,331 - +1.2
2,431,550 - EX28DRAFT_2406 0.22 +0.3
2,431,571 - EX28DRAFT_2406 0.24 +0.4
2,431,665 + EX28DRAFT_2406 0.36 +0.4
2,431,665 + EX28DRAFT_2406 0.36 -0.4
2,431,665 + EX28DRAFT_2406 0.36 +0.4
2,431,666 - EX28DRAFT_2406 0.36 -0.4
2,431,666 - EX28DRAFT_2406 0.36 +0.0
2,431,666 - EX28DRAFT_2406 0.36 -0.2
2,431,666 - EX28DRAFT_2406 0.36 -0.3
2,431,666 - EX28DRAFT_2406 0.36 -0.4
2,431,667 + EX28DRAFT_2406 0.36 -0.2
2,431,667 + EX28DRAFT_2406 0.36 +0.4
2,431,667 + EX28DRAFT_2406 0.36 -0.1
2,431,668 - EX28DRAFT_2406 0.36 -0.6
2,431,668 - EX28DRAFT_2406 0.36 -0.1
2,431,668 - EX28DRAFT_2406 0.36 +0.0
2,431,670 - EX28DRAFT_2406 0.37 +1.6
2,431,670 - EX28DRAFT_2406 0.37 +0.6
2,431,696 + EX28DRAFT_2406 0.40 -1.1
2,431,810 - EX28DRAFT_2406 0.54 -0.5

Or see this region's nucleotide sequence