Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2387

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2385 and EX28DRAFT_2386 are separated by 128 nucleotidesEX28DRAFT_2386 and EX28DRAFT_2387 are separated by 13 nucleotidesEX28DRAFT_2387 and EX28DRAFT_2388 are separated by 13 nucleotides EX28DRAFT_2385: EX28DRAFT_2385 - choline/carnitine/betaine transport, at 2,409,296 to 2,411,329 _2385 EX28DRAFT_2386: EX28DRAFT_2386 - transcriptional regulator, TetR family, at 2,411,458 to 2,412,045 _2386 EX28DRAFT_2387: EX28DRAFT_2387 - betaine-aldehyde dehydrogenase, at 2,412,059 to 2,413,531 _2387 EX28DRAFT_2388: EX28DRAFT_2388 - choline dehydrogenase, at 2,413,545 to 2,415,209 _2388 Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -2 -1 0 1 2at 2411.136 kb on + strandat 2411.137 kb on - strandat 2411.157 kb on + strandat 2411.158 kb on - strandat 2411.161 kb on - strandat 2411.272 kb on + strandat 2411.395 kb on - strandat 2411.421 kb on + strandat 2411.522 kb on + strand, within EX28DRAFT_2386at 2411.522 kb on + strand, within EX28DRAFT_2386at 2411.522 kb on + strand, within EX28DRAFT_2386at 2411.602 kb on + strand, within EX28DRAFT_2386at 2411.603 kb on - strand, within EX28DRAFT_2386at 2412.006 kb on + strandat 2412.032 kb on + strandat 2412.059 kb on - strandat 2412.086 kb on + strandat 2412.086 kb on + strandat 2412.087 kb on - strandat 2412.087 kb on - strandat 2412.088 kb on + strandat 2412.088 kb on + strandat 2412.089 kb on - strandat 2412.089 kb on - strandat 2412.089 kb on - strandat 2412.089 kb on - strandat 2412.103 kb on + strandat 2412.103 kb on + strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.402 kb on - strand, within EX28DRAFT_2387at 2412.632 kb on + strand, within EX28DRAFT_2387at 2412.660 kb on + strand, within EX28DRAFT_2387at 2413.251 kb on - strand, within EX28DRAFT_2387at 2413.251 kb on - strand, within EX28DRAFT_2387at 2413.525 kb on - strandat 2413.525 kb on - strandat 2413.557 kb on + strandat 2413.625 kb on + strandat 2413.722 kb on + strand, within EX28DRAFT_2388at 2413.723 kb on - strand, within EX28DRAFT_2388at 2413.755 kb on + strand, within EX28DRAFT_2388at 2413.755 kb on + strand, within EX28DRAFT_2388at 2413.756 kb on - strand, within EX28DRAFT_2388at 2413.830 kb on + strand, within EX28DRAFT_2388at 2413.830 kb on + strand, within EX28DRAFT_2388at 2413.830 kb on + strand, within EX28DRAFT_2388at 2413.831 kb on - strand, within EX28DRAFT_2388at 2413.897 kb on - strand, within EX28DRAFT_2388at 2413.897 kb on - strand, within EX28DRAFT_2388at 2414.169 kb on - strand, within EX28DRAFT_2388at 2414.217 kb on - strand, within EX28DRAFT_2388at 2414.217 kb on - strand, within EX28DRAFT_2388at 2414.220 kb on - strand, within EX28DRAFT_2388at 2414.297 kb on + strand, within EX28DRAFT_2388at 2414.452 kb on - strand, within EX28DRAFT_2388

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,411,136 + +0.3
2,411,137 - -0.0
2,411,157 + -0.1
2,411,158 - +2.3
2,411,161 - +0.1
2,411,272 + -0.5
2,411,395 - -0.4
2,411,421 + +1.3
2,411,522 + EX28DRAFT_2386 0.11 -0.7
2,411,522 + EX28DRAFT_2386 0.11 +1.0
2,411,522 + EX28DRAFT_2386 0.11 -0.1
2,411,602 + EX28DRAFT_2386 0.24 -0.8
2,411,603 - EX28DRAFT_2386 0.25 -0.2
2,412,006 + -1.9
2,412,032 + -0.4
2,412,059 - +0.1
2,412,086 + -2.5
2,412,086 + -0.3
2,412,087 - -0.2
2,412,087 - +2.1
2,412,088 + -0.3
2,412,088 + -0.1
2,412,089 - +0.2
2,412,089 - +0.2
2,412,089 - -0.9
2,412,089 - +0.2
2,412,103 + -0.5
2,412,103 + -1.1
2,412,104 - -1.2
2,412,104 - -0.4
2,412,104 - +0.4
2,412,104 - -0.1
2,412,104 - -0.3
2,412,402 - EX28DRAFT_2387 0.23 -0.2
2,412,632 + EX28DRAFT_2387 0.39 -0.3
2,412,660 + EX28DRAFT_2387 0.41 -0.1
2,413,251 - EX28DRAFT_2387 0.81 -0.7
2,413,251 - EX28DRAFT_2387 0.81 -1.8
2,413,525 - +0.2
2,413,525 - -0.2
2,413,557 + +0.1
2,413,625 + -0.4
2,413,722 + EX28DRAFT_2388 0.11 +0.3
2,413,723 - EX28DRAFT_2388 0.11 +1.7
2,413,755 + EX28DRAFT_2388 0.13 -0.4
2,413,755 + EX28DRAFT_2388 0.13 +0.1
2,413,756 - EX28DRAFT_2388 0.13 +0.9
2,413,830 + EX28DRAFT_2388 0.17 +0.5
2,413,830 + EX28DRAFT_2388 0.17 -0.2
2,413,830 + EX28DRAFT_2388 0.17 -0.7
2,413,831 - EX28DRAFT_2388 0.17 +0.3
2,413,897 - EX28DRAFT_2388 0.21 +0.3
2,413,897 - EX28DRAFT_2388 0.21 -0.2
2,414,169 - EX28DRAFT_2388 0.37 +0.4
2,414,217 - EX28DRAFT_2388 0.40 -0.4
2,414,217 - EX28DRAFT_2388 0.40 +0.1
2,414,220 - EX28DRAFT_2388 0.41 -0.4
2,414,297 + EX28DRAFT_2388 0.45 +0.1
2,414,452 - EX28DRAFT_2388 0.54 +0.1

Or see this region's nucleotide sequence