Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2385 and EX28DRAFT_2386 are separated by 128 nucleotides EX28DRAFT_2386 and EX28DRAFT_2387 are separated by 13 nucleotides EX28DRAFT_2387 and EX28DRAFT_2388 are separated by 13 nucleotides
EX28DRAFT_2385: EX28DRAFT_2385 - choline/carnitine/betaine transport, at 2,409,296 to 2,411,329
_2385
EX28DRAFT_2386: EX28DRAFT_2386 - transcriptional regulator, TetR family, at 2,411,458 to 2,412,045
_2386
EX28DRAFT_2387: EX28DRAFT_2387 - betaine-aldehyde dehydrogenase, at 2,412,059 to 2,413,531
_2387
EX28DRAFT_2388: EX28DRAFT_2388 - choline dehydrogenase, at 2,413,545 to 2,415,209
_2388
Position (kb)
2412
2413
2414 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2411.136 kb on + strand at 2411.137 kb on - strand at 2411.157 kb on + strand at 2411.158 kb on - strand at 2411.161 kb on - strand at 2411.272 kb on + strand at 2411.395 kb on - strand at 2411.421 kb on + strand at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.602 kb on + strand, within EX28DRAFT_2386 at 2411.603 kb on - strand, within EX28DRAFT_2386 at 2412.006 kb on + strand at 2412.032 kb on + strand at 2412.059 kb on - strand at 2412.086 kb on + strand at 2412.086 kb on + strand at 2412.087 kb on - strand at 2412.087 kb on - strand at 2412.088 kb on + strand at 2412.088 kb on + strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.103 kb on + strand at 2412.103 kb on + strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.402 kb on - strand, within EX28DRAFT_2387 at 2412.632 kb on + strand, within EX28DRAFT_2387 at 2412.660 kb on + strand, within EX28DRAFT_2387 at 2413.251 kb on - strand, within EX28DRAFT_2387 at 2413.251 kb on - strand, within EX28DRAFT_2387 at 2413.525 kb on - strand at 2413.525 kb on - strand at 2413.557 kb on + strand at 2413.625 kb on + strand at 2413.722 kb on + strand, within EX28DRAFT_2388 at 2413.723 kb on - strand, within EX28DRAFT_2388 at 2413.755 kb on + strand, within EX28DRAFT_2388 at 2413.755 kb on + strand, within EX28DRAFT_2388 at 2413.756 kb on - strand, within EX28DRAFT_2388 at 2413.830 kb on + strand, within EX28DRAFT_2388 at 2413.830 kb on + strand, within EX28DRAFT_2388 at 2413.830 kb on + strand, within EX28DRAFT_2388 at 2413.831 kb on - strand, within EX28DRAFT_2388 at 2413.897 kb on - strand, within EX28DRAFT_2388 at 2413.897 kb on - strand, within EX28DRAFT_2388 at 2414.169 kb on - strand, within EX28DRAFT_2388 at 2414.217 kb on - strand, within EX28DRAFT_2388 at 2414.217 kb on - strand, within EX28DRAFT_2388 at 2414.220 kb on - strand, within EX28DRAFT_2388 at 2414.297 kb on + strand, within EX28DRAFT_2388 at 2414.452 kb on - strand, within EX28DRAFT_2388
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,411,136 + +0.3 2,411,137 - -0.0 2,411,157 + -0.1 2,411,158 - +2.3 2,411,161 - +0.1 2,411,272 + -0.5 2,411,395 - -0.4 2,411,421 + +1.3 2,411,522 + EX28DRAFT_2386 0.11 -0.7 2,411,522 + EX28DRAFT_2386 0.11 +1.0 2,411,522 + EX28DRAFT_2386 0.11 -0.1 2,411,602 + EX28DRAFT_2386 0.24 -0.8 2,411,603 - EX28DRAFT_2386 0.25 -0.2 2,412,006 + -1.9 2,412,032 + -0.4 2,412,059 - +0.1 2,412,086 + -2.5 2,412,086 + -0.3 2,412,087 - -0.2 2,412,087 - +2.1 2,412,088 + -0.3 2,412,088 + -0.1 2,412,089 - +0.2 2,412,089 - +0.2 2,412,089 - -0.9 2,412,089 - +0.2 2,412,103 + -0.5 2,412,103 + -1.1 2,412,104 - -1.2 2,412,104 - -0.4 2,412,104 - +0.4 2,412,104 - -0.1 2,412,104 - -0.3 2,412,402 - EX28DRAFT_2387 0.23 -0.2 2,412,632 + EX28DRAFT_2387 0.39 -0.3 2,412,660 + EX28DRAFT_2387 0.41 -0.1 2,413,251 - EX28DRAFT_2387 0.81 -0.7 2,413,251 - EX28DRAFT_2387 0.81 -1.8 2,413,525 - +0.2 2,413,525 - -0.2 2,413,557 + +0.1 2,413,625 + -0.4 2,413,722 + EX28DRAFT_2388 0.11 +0.3 2,413,723 - EX28DRAFT_2388 0.11 +1.7 2,413,755 + EX28DRAFT_2388 0.13 -0.4 2,413,755 + EX28DRAFT_2388 0.13 +0.1 2,413,756 - EX28DRAFT_2388 0.13 +0.9 2,413,830 + EX28DRAFT_2388 0.17 +0.5 2,413,830 + EX28DRAFT_2388 0.17 -0.2 2,413,830 + EX28DRAFT_2388 0.17 -0.7 2,413,831 - EX28DRAFT_2388 0.17 +0.3 2,413,897 - EX28DRAFT_2388 0.21 +0.3 2,413,897 - EX28DRAFT_2388 0.21 -0.2 2,414,169 - EX28DRAFT_2388 0.37 +0.4 2,414,217 - EX28DRAFT_2388 0.40 -0.4 2,414,217 - EX28DRAFT_2388 0.40 +0.1 2,414,220 - EX28DRAFT_2388 0.41 -0.4 2,414,297 + EX28DRAFT_2388 0.45 +0.1 2,414,452 - EX28DRAFT_2388 0.54 +0.1
Or see this region's nucleotide sequence