Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2361

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2360 and EX28DRAFT_2361 are separated by 89 nucleotidesEX28DRAFT_2361 and EX28DRAFT_2362 are separated by 19 nucleotides EX28DRAFT_2360: EX28DRAFT_2360 - Uncharacterized conserved protein, at 2,380,162 to 2,381,403 _2360 EX28DRAFT_2361: EX28DRAFT_2361 - ABC-type sugar transport system, periplasmic component, at 2,381,493 to 2,382,557 _2361 EX28DRAFT_2362: EX28DRAFT_2362 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 2,382,577 to 2,383,572 _2362 Position (kb) 2381 2382 2383Strain fitness (log2 ratio) -2 -1 0 1 2at 2380.895 kb on + strand, within EX28DRAFT_2360at 2380.896 kb on - strand, within EX28DRAFT_2360at 2380.929 kb on - strand, within EX28DRAFT_2360at 2381.023 kb on - strand, within EX28DRAFT_2360at 2381.096 kb on + strand, within EX28DRAFT_2360at 2381.096 kb on + strand, within EX28DRAFT_2360at 2381.097 kb on - strand, within EX28DRAFT_2360at 2381.292 kb on - strandat 2381.408 kb on - strandat 2381.495 kb on - strandat 2381.495 kb on - strandat 2381.495 kb on - strandat 2382.017 kb on - strand, within EX28DRAFT_2361at 2382.266 kb on + strand, within EX28DRAFT_2361at 2382.277 kb on + strand, within EX28DRAFT_2361at 2382.277 kb on + strand, within EX28DRAFT_2361at 2382.393 kb on - strand, within EX28DRAFT_2361at 2382.590 kb on - strandat 2382.590 kb on - strandat 2382.593 kb on + strandat 2382.631 kb on + strandat 2382.631 kb on + strandat 2382.632 kb on - strandat 2382.632 kb on - strandat 2382.634 kb on - strandat 2382.634 kb on - strandat 2382.647 kb on + strandat 2382.648 kb on - strandat 2382.947 kb on + strand, within EX28DRAFT_2362at 2382.947 kb on + strand, within EX28DRAFT_2362at 2383.062 kb on + strand, within EX28DRAFT_2362at 2383.127 kb on + strand, within EX28DRAFT_2362at 2383.127 kb on + strand, within EX28DRAFT_2362at 2383.188 kb on + strand, within EX28DRAFT_2362at 2383.216 kb on - strand, within EX28DRAFT_2362at 2383.381 kb on - strand, within EX28DRAFT_2362at 2383.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,380,895 + EX28DRAFT_2360 0.59 -0.6
2,380,896 - EX28DRAFT_2360 0.59 +0.1
2,380,929 - EX28DRAFT_2360 0.62 +2.3
2,381,023 - EX28DRAFT_2360 0.69 -0.4
2,381,096 + EX28DRAFT_2360 0.75 +0.6
2,381,096 + EX28DRAFT_2360 0.75 -0.2
2,381,097 - EX28DRAFT_2360 0.75 -2.2
2,381,292 - +0.4
2,381,408 - -0.1
2,381,495 - -0.1
2,381,495 - +0.3
2,381,495 - +0.5
2,382,017 - EX28DRAFT_2361 0.49 -0.2
2,382,266 + EX28DRAFT_2361 0.73 -0.4
2,382,277 + EX28DRAFT_2361 0.74 -0.6
2,382,277 + EX28DRAFT_2361 0.74 -1.8
2,382,393 - EX28DRAFT_2361 0.85 +0.3
2,382,590 - +0.3
2,382,590 - +0.4
2,382,593 + -0.2
2,382,631 + +0.5
2,382,631 + +1.5
2,382,632 - +0.3
2,382,632 - +0.3
2,382,634 - +0.6
2,382,634 - +0.1
2,382,647 + +0.7
2,382,648 - +0.3
2,382,947 + EX28DRAFT_2362 0.37 +1.8
2,382,947 + EX28DRAFT_2362 0.37 -0.1
2,383,062 + EX28DRAFT_2362 0.49 -0.2
2,383,127 + EX28DRAFT_2362 0.55 -0.8
2,383,127 + EX28DRAFT_2362 0.55 +0.2
2,383,188 + EX28DRAFT_2362 0.61 +0.0
2,383,216 - EX28DRAFT_2362 0.64 +0.0
2,383,381 - EX28DRAFT_2362 0.81 -0.6
2,383,509 - +0.8

Or see this region's nucleotide sequence