Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2311

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2310 and EX28DRAFT_2311 are separated by 163 nucleotidesEX28DRAFT_2311 and EX28DRAFT_2312 overlap by 4 nucleotidesEX28DRAFT_2312 and EX28DRAFT_2313 are separated by 44 nucleotides EX28DRAFT_2310: EX28DRAFT_2310 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 2,335,058 to 2,336,482 _2310 EX28DRAFT_2311: EX28DRAFT_2311 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 2,336,646 to 2,337,692 _2311 EX28DRAFT_2312: EX28DRAFT_2312 - probable rRNA maturation factor YbeY, at 2,337,689 to 2,338,156 _2312 EX28DRAFT_2313: EX28DRAFT_2313 - Putative Mg2+ and Co2+ transporter CorC, at 2,338,201 to 2,339,124 _2313 Position (kb) 2336 2337 2338Strain fitness (log2 ratio) -2 -1 0 1at 2335.749 kb on + strand, within EX28DRAFT_2310at 2335.750 kb on - strand, within EX28DRAFT_2310at 2335.750 kb on - strand, within EX28DRAFT_2310at 2335.750 kb on - strand, within EX28DRAFT_2310at 2335.811 kb on + strand, within EX28DRAFT_2310at 2335.913 kb on + strand, within EX28DRAFT_2310at 2336.144 kb on + strand, within EX28DRAFT_2310at 2336.144 kb on + strand, within EX28DRAFT_2310at 2336.144 kb on + strand, within EX28DRAFT_2310at 2336.144 kb on + strand, within EX28DRAFT_2310at 2336.145 kb on - strand, within EX28DRAFT_2310at 2336.160 kb on + strand, within EX28DRAFT_2310at 2336.161 kb on + strand, within EX28DRAFT_2310at 2336.161 kb on + strand, within EX28DRAFT_2310at 2336.161 kb on + strand, within EX28DRAFT_2310at 2336.162 kb on - strand, within EX28DRAFT_2310at 2336.195 kb on - strand, within EX28DRAFT_2310at 2336.404 kb on + strandat 2336.405 kb on - strandat 2336.481 kb on - strandat 2336.515 kb on - strandat 2336.515 kb on - strandat 2336.537 kb on - strandat 2336.653 kb on + strandat 2336.654 kb on - strandat 2336.844 kb on + strand, within EX28DRAFT_2311at 2336.844 kb on + strand, within EX28DRAFT_2311at 2336.852 kb on + strand, within EX28DRAFT_2311at 2337.027 kb on + strand, within EX28DRAFT_2311at 2337.093 kb on + strand, within EX28DRAFT_2311at 2337.327 kb on + strand, within EX28DRAFT_2311at 2337.327 kb on + strand, within EX28DRAFT_2311at 2337.327 kb on + strand, within EX28DRAFT_2311at 2337.428 kb on + strand, within EX28DRAFT_2311at 2337.635 kb on + strandat 2337.659 kb on + strandat 2338.220 kb on + strandat 2338.287 kb on + strandat 2338.404 kb on + strand, within EX28DRAFT_2313at 2338.405 kb on - strand, within EX28DRAFT_2313at 2338.405 kb on - strand, within EX28DRAFT_2313at 2338.662 kb on - strand, within EX28DRAFT_2313

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,335,749 + EX28DRAFT_2310 0.48 -2.2
2,335,750 - EX28DRAFT_2310 0.49 +0.3
2,335,750 - EX28DRAFT_2310 0.49 +0.7
2,335,750 - EX28DRAFT_2310 0.49 -0.4
2,335,811 + EX28DRAFT_2310 0.53 -0.1
2,335,913 + EX28DRAFT_2310 0.60 +1.2
2,336,144 + EX28DRAFT_2310 0.76 -0.3
2,336,144 + EX28DRAFT_2310 0.76 +0.1
2,336,144 + EX28DRAFT_2310 0.76 +0.4
2,336,144 + EX28DRAFT_2310 0.76 +0.0
2,336,145 - EX28DRAFT_2310 0.76 +0.3
2,336,160 + EX28DRAFT_2310 0.77 -0.0
2,336,161 + EX28DRAFT_2310 0.77 +0.4
2,336,161 + EX28DRAFT_2310 0.77 -1.3
2,336,161 + EX28DRAFT_2310 0.77 +0.3
2,336,162 - EX28DRAFT_2310 0.77 -0.0
2,336,195 - EX28DRAFT_2310 0.80 +0.8
2,336,404 + +0.3
2,336,405 - +0.4
2,336,481 - +1.7
2,336,515 - +0.2
2,336,515 - +0.1
2,336,537 - +0.5
2,336,653 + +0.4
2,336,654 - -0.9
2,336,844 + EX28DRAFT_2311 0.19 -0.1
2,336,844 + EX28DRAFT_2311 0.19 -0.1
2,336,852 + EX28DRAFT_2311 0.20 +0.3
2,337,027 + EX28DRAFT_2311 0.36 -1.0
2,337,093 + EX28DRAFT_2311 0.43 -0.7
2,337,327 + EX28DRAFT_2311 0.65 -0.0
2,337,327 + EX28DRAFT_2311 0.65 +0.0
2,337,327 + EX28DRAFT_2311 0.65 -2.4
2,337,428 + EX28DRAFT_2311 0.75 +0.2
2,337,635 + -0.5
2,337,659 + +0.2
2,338,220 + +0.3
2,338,287 + -1.7
2,338,404 + EX28DRAFT_2313 0.22 -0.3
2,338,405 - EX28DRAFT_2313 0.22 +0.7
2,338,405 - EX28DRAFT_2313 0.22 +1.1
2,338,662 - EX28DRAFT_2313 0.50 -0.7

Or see this region's nucleotide sequence