Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2286

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2285 and EX28DRAFT_2286 overlap by 4 nucleotidesEX28DRAFT_2286 and EX28DRAFT_2287 are separated by 104 nucleotides EX28DRAFT_2285: EX28DRAFT_2285 - ornithine decarboxylase SpeF, at 2,311,651 to 2,313,849 _2285 EX28DRAFT_2286: EX28DRAFT_2286 - putrescine-ornithine antiporter, at 2,313,846 to 2,315,159 _2286 EX28DRAFT_2287: EX28DRAFT_2287 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 2,315,264 to 2,316,904 _2287 Position (kb) 2313 2314 2315 2316Strain fitness (log2 ratio) -2 -1 0 1at 2313.101 kb on - strand, within EX28DRAFT_2285at 2313.101 kb on - strand, within EX28DRAFT_2285at 2313.115 kb on + strand, within EX28DRAFT_2285at 2313.116 kb on - strand, within EX28DRAFT_2285at 2313.116 kb on - strand, within EX28DRAFT_2285at 2313.116 kb on - strand, within EX28DRAFT_2285at 2313.120 kb on + strand, within EX28DRAFT_2285at 2313.179 kb on - strand, within EX28DRAFT_2285at 2313.204 kb on + strand, within EX28DRAFT_2285at 2313.204 kb on + strand, within EX28DRAFT_2285at 2313.294 kb on + strand, within EX28DRAFT_2285at 2313.391 kb on - strand, within EX28DRAFT_2285at 2313.391 kb on - strand, within EX28DRAFT_2285at 2313.418 kb on + strand, within EX28DRAFT_2285at 2313.458 kb on - strand, within EX28DRAFT_2285at 2313.755 kb on - strandat 2313.845 kb on + strandat 2313.860 kb on + strandat 2313.921 kb on - strandat 2314.041 kb on - strand, within EX28DRAFT_2286at 2314.107 kb on + strand, within EX28DRAFT_2286at 2314.107 kb on + strand, within EX28DRAFT_2286at 2314.107 kb on + strand, within EX28DRAFT_2286at 2314.108 kb on - strand, within EX28DRAFT_2286at 2314.109 kb on + strand, within EX28DRAFT_2286at 2314.110 kb on - strand, within EX28DRAFT_2286at 2314.113 kb on + strand, within EX28DRAFT_2286at 2314.114 kb on - strand, within EX28DRAFT_2286at 2314.314 kb on - strand, within EX28DRAFT_2286at 2314.368 kb on + strand, within EX28DRAFT_2286at 2314.551 kb on + strand, within EX28DRAFT_2286at 2314.551 kb on + strand, within EX28DRAFT_2286at 2314.552 kb on - strand, within EX28DRAFT_2286at 2314.552 kb on - strand, within EX28DRAFT_2286at 2314.552 kb on - strand, within EX28DRAFT_2286at 2314.553 kb on + strand, within EX28DRAFT_2286at 2314.739 kb on + strand, within EX28DRAFT_2286at 2314.761 kb on + strand, within EX28DRAFT_2286at 2314.762 kb on - strand, within EX28DRAFT_2286at 2314.762 kb on - strand, within EX28DRAFT_2286at 2314.762 kb on - strand, within EX28DRAFT_2286at 2314.862 kb on + strand, within EX28DRAFT_2286at 2314.929 kb on + strand, within EX28DRAFT_2286at 2314.929 kb on + strand, within EX28DRAFT_2286at 2314.930 kb on - strand, within EX28DRAFT_2286at 2315.040 kb on + strandat 2315.040 kb on + strandat 2315.040 kb on + strandat 2315.040 kb on + strandat 2315.041 kb on - strandat 2315.049 kb on + strandat 2315.049 kb on + strandat 2315.113 kb on - strandat 2315.157 kb on + strandat 2315.158 kb on - strandat 2315.197 kb on - strandat 2315.571 kb on + strand, within EX28DRAFT_2287at 2315.608 kb on - strand, within EX28DRAFT_2287at 2315.913 kb on + strand, within EX28DRAFT_2287at 2315.917 kb on + strand, within EX28DRAFT_2287at 2316.101 kb on - strand, within EX28DRAFT_2287at 2316.153 kb on + strand, within EX28DRAFT_2287

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,313,101 - EX28DRAFT_2285 0.66 +0.6
2,313,101 - EX28DRAFT_2285 0.66 -0.5
2,313,115 + EX28DRAFT_2285 0.67 -0.1
2,313,116 - EX28DRAFT_2285 0.67 +0.9
2,313,116 - EX28DRAFT_2285 0.67 -0.2
2,313,116 - EX28DRAFT_2285 0.67 +0.6
2,313,120 + EX28DRAFT_2285 0.67 +0.2
2,313,179 - EX28DRAFT_2285 0.69 +0.7
2,313,204 + EX28DRAFT_2285 0.71 -0.5
2,313,204 + EX28DRAFT_2285 0.71 +0.0
2,313,294 + EX28DRAFT_2285 0.75 -0.1
2,313,391 - EX28DRAFT_2285 0.79 +0.1
2,313,391 - EX28DRAFT_2285 0.79 -0.1
2,313,418 + EX28DRAFT_2285 0.80 -0.9
2,313,458 - EX28DRAFT_2285 0.82 -0.7
2,313,755 - -0.2
2,313,845 + +0.1
2,313,860 + -0.3
2,313,921 - +0.0
2,314,041 - EX28DRAFT_2286 0.15 +1.1
2,314,107 + EX28DRAFT_2286 0.20 +0.4
2,314,107 + EX28DRAFT_2286 0.20 +0.5
2,314,107 + EX28DRAFT_2286 0.20 -0.0
2,314,108 - EX28DRAFT_2286 0.20 +0.1
2,314,109 + EX28DRAFT_2286 0.20 -0.1
2,314,110 - EX28DRAFT_2286 0.20 +0.0
2,314,113 + EX28DRAFT_2286 0.20 -0.7
2,314,114 - EX28DRAFT_2286 0.20 -0.3
2,314,314 - EX28DRAFT_2286 0.36 +0.0
2,314,368 + EX28DRAFT_2286 0.40 +0.1
2,314,551 + EX28DRAFT_2286 0.54 +0.0
2,314,551 + EX28DRAFT_2286 0.54 -0.1
2,314,552 - EX28DRAFT_2286 0.54 -0.8
2,314,552 - EX28DRAFT_2286 0.54 -0.8
2,314,552 - EX28DRAFT_2286 0.54 +0.2
2,314,553 + EX28DRAFT_2286 0.54 -0.4
2,314,739 + EX28DRAFT_2286 0.68 -0.3
2,314,761 + EX28DRAFT_2286 0.70 -0.7
2,314,762 - EX28DRAFT_2286 0.70 +0.7
2,314,762 - EX28DRAFT_2286 0.70 -0.6
2,314,762 - EX28DRAFT_2286 0.70 -0.1
2,314,862 + EX28DRAFT_2286 0.77 -0.2
2,314,929 + EX28DRAFT_2286 0.82 -0.3
2,314,929 + EX28DRAFT_2286 0.82 -0.7
2,314,930 - EX28DRAFT_2286 0.82 -0.6
2,315,040 + -1.0
2,315,040 + +1.3
2,315,040 + +1.0
2,315,040 + +0.2
2,315,041 - +0.4
2,315,049 + -0.1
2,315,049 + -2.2
2,315,113 - +1.0
2,315,157 + -1.2
2,315,158 - -1.3
2,315,197 - +0.4
2,315,571 + EX28DRAFT_2287 0.19 +0.1
2,315,608 - EX28DRAFT_2287 0.21 -0.6
2,315,913 + EX28DRAFT_2287 0.40 -1.3
2,315,917 + EX28DRAFT_2287 0.40 +0.2
2,316,101 - EX28DRAFT_2287 0.51 +0.0
2,316,153 + EX28DRAFT_2287 0.54 +0.8

Or see this region's nucleotide sequence