Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2285 and EX28DRAFT_2286 overlap by 4 nucleotides EX28DRAFT_2286 and EX28DRAFT_2287 are separated by 104 nucleotides
EX28DRAFT_2285: EX28DRAFT_2285 - ornithine decarboxylase SpeF, at 2,311,651 to 2,313,849
_2285
EX28DRAFT_2286: EX28DRAFT_2286 - putrescine-ornithine antiporter, at 2,313,846 to 2,315,159
_2286
EX28DRAFT_2287: EX28DRAFT_2287 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 2,315,264 to 2,316,904
_2287
Position (kb)
2313
2314
2315
2316 Strain fitness (log2 ratio)
-2
-1
0
1 at 2313.101 kb on - strand, within EX28DRAFT_2285 at 2313.101 kb on - strand, within EX28DRAFT_2285 at 2313.115 kb on + strand, within EX28DRAFT_2285 at 2313.116 kb on - strand, within EX28DRAFT_2285 at 2313.116 kb on - strand, within EX28DRAFT_2285 at 2313.116 kb on - strand, within EX28DRAFT_2285 at 2313.120 kb on + strand, within EX28DRAFT_2285 at 2313.179 kb on - strand, within EX28DRAFT_2285 at 2313.204 kb on + strand, within EX28DRAFT_2285 at 2313.204 kb on + strand, within EX28DRAFT_2285 at 2313.294 kb on + strand, within EX28DRAFT_2285 at 2313.391 kb on - strand, within EX28DRAFT_2285 at 2313.391 kb on - strand, within EX28DRAFT_2285 at 2313.418 kb on + strand, within EX28DRAFT_2285 at 2313.458 kb on - strand, within EX28DRAFT_2285 at 2313.755 kb on - strand at 2313.845 kb on + strand at 2313.860 kb on + strand at 2313.921 kb on - strand at 2314.041 kb on - strand, within EX28DRAFT_2286 at 2314.107 kb on + strand, within EX28DRAFT_2286 at 2314.107 kb on + strand, within EX28DRAFT_2286 at 2314.107 kb on + strand, within EX28DRAFT_2286 at 2314.108 kb on - strand, within EX28DRAFT_2286 at 2314.109 kb on + strand, within EX28DRAFT_2286 at 2314.110 kb on - strand, within EX28DRAFT_2286 at 2314.113 kb on + strand, within EX28DRAFT_2286 at 2314.114 kb on - strand, within EX28DRAFT_2286 at 2314.314 kb on - strand, within EX28DRAFT_2286 at 2314.368 kb on + strand, within EX28DRAFT_2286 at 2314.551 kb on + strand, within EX28DRAFT_2286 at 2314.551 kb on + strand, within EX28DRAFT_2286 at 2314.552 kb on - strand, within EX28DRAFT_2286 at 2314.552 kb on - strand, within EX28DRAFT_2286 at 2314.552 kb on - strand, within EX28DRAFT_2286 at 2314.553 kb on + strand, within EX28DRAFT_2286 at 2314.739 kb on + strand, within EX28DRAFT_2286 at 2314.761 kb on + strand, within EX28DRAFT_2286 at 2314.762 kb on - strand, within EX28DRAFT_2286 at 2314.762 kb on - strand, within EX28DRAFT_2286 at 2314.762 kb on - strand, within EX28DRAFT_2286 at 2314.862 kb on + strand, within EX28DRAFT_2286 at 2314.929 kb on + strand, within EX28DRAFT_2286 at 2314.929 kb on + strand, within EX28DRAFT_2286 at 2314.930 kb on - strand, within EX28DRAFT_2286 at 2315.040 kb on + strand at 2315.040 kb on + strand at 2315.040 kb on + strand at 2315.040 kb on + strand at 2315.041 kb on - strand at 2315.049 kb on + strand at 2315.049 kb on + strand at 2315.113 kb on - strand at 2315.157 kb on + strand at 2315.158 kb on - strand at 2315.197 kb on - strand at 2315.571 kb on + strand, within EX28DRAFT_2287 at 2315.608 kb on - strand, within EX28DRAFT_2287 at 2315.913 kb on + strand, within EX28DRAFT_2287 at 2315.917 kb on + strand, within EX28DRAFT_2287 at 2316.101 kb on - strand, within EX28DRAFT_2287 at 2316.153 kb on + strand, within EX28DRAFT_2287
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,313,101 - EX28DRAFT_2285 0.66 +0.6 2,313,101 - EX28DRAFT_2285 0.66 -0.5 2,313,115 + EX28DRAFT_2285 0.67 -0.1 2,313,116 - EX28DRAFT_2285 0.67 +0.9 2,313,116 - EX28DRAFT_2285 0.67 -0.2 2,313,116 - EX28DRAFT_2285 0.67 +0.6 2,313,120 + EX28DRAFT_2285 0.67 +0.2 2,313,179 - EX28DRAFT_2285 0.69 +0.7 2,313,204 + EX28DRAFT_2285 0.71 -0.5 2,313,204 + EX28DRAFT_2285 0.71 +0.0 2,313,294 + EX28DRAFT_2285 0.75 -0.1 2,313,391 - EX28DRAFT_2285 0.79 +0.1 2,313,391 - EX28DRAFT_2285 0.79 -0.1 2,313,418 + EX28DRAFT_2285 0.80 -0.9 2,313,458 - EX28DRAFT_2285 0.82 -0.7 2,313,755 - -0.2 2,313,845 + +0.1 2,313,860 + -0.3 2,313,921 - +0.0 2,314,041 - EX28DRAFT_2286 0.15 +1.1 2,314,107 + EX28DRAFT_2286 0.20 +0.4 2,314,107 + EX28DRAFT_2286 0.20 +0.5 2,314,107 + EX28DRAFT_2286 0.20 -0.0 2,314,108 - EX28DRAFT_2286 0.20 +0.1 2,314,109 + EX28DRAFT_2286 0.20 -0.1 2,314,110 - EX28DRAFT_2286 0.20 +0.0 2,314,113 + EX28DRAFT_2286 0.20 -0.7 2,314,114 - EX28DRAFT_2286 0.20 -0.3 2,314,314 - EX28DRAFT_2286 0.36 +0.0 2,314,368 + EX28DRAFT_2286 0.40 +0.1 2,314,551 + EX28DRAFT_2286 0.54 +0.0 2,314,551 + EX28DRAFT_2286 0.54 -0.1 2,314,552 - EX28DRAFT_2286 0.54 -0.8 2,314,552 - EX28DRAFT_2286 0.54 -0.8 2,314,552 - EX28DRAFT_2286 0.54 +0.2 2,314,553 + EX28DRAFT_2286 0.54 -0.4 2,314,739 + EX28DRAFT_2286 0.68 -0.3 2,314,761 + EX28DRAFT_2286 0.70 -0.7 2,314,762 - EX28DRAFT_2286 0.70 +0.7 2,314,762 - EX28DRAFT_2286 0.70 -0.6 2,314,762 - EX28DRAFT_2286 0.70 -0.1 2,314,862 + EX28DRAFT_2286 0.77 -0.2 2,314,929 + EX28DRAFT_2286 0.82 -0.3 2,314,929 + EX28DRAFT_2286 0.82 -0.7 2,314,930 - EX28DRAFT_2286 0.82 -0.6 2,315,040 + -1.0 2,315,040 + +1.3 2,315,040 + +1.0 2,315,040 + +0.2 2,315,041 - +0.4 2,315,049 + -0.1 2,315,049 + -2.2 2,315,113 - +1.0 2,315,157 + -1.2 2,315,158 - -1.3 2,315,197 - +0.4 2,315,571 + EX28DRAFT_2287 0.19 +0.1 2,315,608 - EX28DRAFT_2287 0.21 -0.6 2,315,913 + EX28DRAFT_2287 0.40 -1.3 2,315,917 + EX28DRAFT_2287 0.40 +0.2 2,316,101 - EX28DRAFT_2287 0.51 +0.0 2,316,153 + EX28DRAFT_2287 0.54 +0.8
Or see this region's nucleotide sequence