Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2198 and EX28DRAFT_2199 are separated by 9 nucleotides EX28DRAFT_2199 and EX28DRAFT_2200 overlap by 39 nucleotides EX28DRAFT_2200 and EX28DRAFT_2201 are separated by 133 nucleotides
EX28DRAFT_2198: EX28DRAFT_2198 - ABC-type multidrug transport system, permease component, at 2,222,493 to 2,223,626
_2198
EX28DRAFT_2199: EX28DRAFT_2199 - ABC-type multidrug transport system, permease component, at 2,223,636 to 2,224,742
_2199
EX28DRAFT_2200: EX28DRAFT_2200 - Putative inner membrane protein YbhQ, at 2,224,704 to 2,225,114
_2200
EX28DRAFT_2201: EX28DRAFT_2201 - Metal-dependent hydrolase, at 2,225,248 to 2,226,009
_2201
Position (kb)
2223
2224
2225 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2222.846 kb on + strand, within EX28DRAFT_2198 at 2222.847 kb on - strand, within EX28DRAFT_2198 at 2222.870 kb on + strand, within EX28DRAFT_2198 at 2223.039 kb on - strand, within EX28DRAFT_2198 at 2223.062 kb on + strand, within EX28DRAFT_2198 at 2223.192 kb on + strand, within EX28DRAFT_2198 at 2223.195 kb on + strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.308 kb on - strand, within EX28DRAFT_2198 at 2223.441 kb on - strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.473 kb on + strand, within EX28DRAFT_2198 at 2223.562 kb on + strand at 2223.563 kb on - strand at 2224.007 kb on + strand, within EX28DRAFT_2199 at 2224.038 kb on + strand, within EX28DRAFT_2199 at 2224.039 kb on - strand, within EX28DRAFT_2199 at 2224.128 kb on + strand, within EX28DRAFT_2199 at 2224.129 kb on - strand, within EX28DRAFT_2199 at 2224.146 kb on + strand, within EX28DRAFT_2199 at 2224.146 kb on + strand, within EX28DRAFT_2199 at 2224.147 kb on - strand, within EX28DRAFT_2199 at 2224.508 kb on + strand, within EX28DRAFT_2199 at 2224.537 kb on - strand, within EX28DRAFT_2199 at 2224.608 kb on - strand, within EX28DRAFT_2199 at 2224.874 kb on - strand, within EX28DRAFT_2200 at 2224.874 kb on - strand, within EX28DRAFT_2200 at 2224.941 kb on + strand, within EX28DRAFT_2200 at 2224.941 kb on + strand, within EX28DRAFT_2200 at 2225.061 kb on + strand, within EX28DRAFT_2200 at 2225.214 kb on - strand at 2225.247 kb on + strand at 2225.247 kb on + strand at 2225.248 kb on - strand at 2225.248 kb on - strand at 2225.277 kb on + strand at 2225.301 kb on + strand at 2225.455 kb on + strand, within EX28DRAFT_2201
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,222,846 + EX28DRAFT_2198 0.31 -1.0 2,222,847 - EX28DRAFT_2198 0.31 +0.5 2,222,870 + EX28DRAFT_2198 0.33 +0.7 2,223,039 - EX28DRAFT_2198 0.48 +0.0 2,223,062 + EX28DRAFT_2198 0.50 +1.2 2,223,192 + EX28DRAFT_2198 0.62 +0.1 2,223,195 + EX28DRAFT_2198 0.62 -0.3 2,223,196 - EX28DRAFT_2198 0.62 +1.1 2,223,196 - EX28DRAFT_2198 0.62 +0.1 2,223,196 - EX28DRAFT_2198 0.62 -0.1 2,223,196 - EX28DRAFT_2198 0.62 +0.3 2,223,308 - EX28DRAFT_2198 0.72 +0.1 2,223,441 - EX28DRAFT_2198 0.84 +0.3 2,223,468 + EX28DRAFT_2198 0.86 -0.2 2,223,468 + EX28DRAFT_2198 0.86 -0.4 2,223,468 + EX28DRAFT_2198 0.86 +0.7 2,223,468 + EX28DRAFT_2198 0.86 -0.2 2,223,468 + EX28DRAFT_2198 0.86 -1.9 2,223,469 - EX28DRAFT_2198 0.86 -0.5 2,223,469 - EX28DRAFT_2198 0.86 +0.2 2,223,469 - EX28DRAFT_2198 0.86 +0.3 2,223,469 - EX28DRAFT_2198 0.86 -0.1 2,223,469 - EX28DRAFT_2198 0.86 +0.2 2,223,469 - EX28DRAFT_2198 0.86 +0.1 2,223,469 - EX28DRAFT_2198 0.86 -0.7 2,223,469 - EX28DRAFT_2198 0.86 +0.6 2,223,473 + EX28DRAFT_2198 0.86 -0.4 2,223,562 + +1.0 2,223,563 - -0.4 2,224,007 + EX28DRAFT_2199 0.34 +0.5 2,224,038 + EX28DRAFT_2199 0.36 +0.5 2,224,039 - EX28DRAFT_2199 0.36 -0.9 2,224,128 + EX28DRAFT_2199 0.44 +0.3 2,224,129 - EX28DRAFT_2199 0.45 +0.4 2,224,146 + EX28DRAFT_2199 0.46 +2.2 2,224,146 + EX28DRAFT_2199 0.46 +2.0 2,224,147 - EX28DRAFT_2199 0.46 +0.6 2,224,508 + EX28DRAFT_2199 0.79 -0.2 2,224,537 - EX28DRAFT_2199 0.81 -0.4 2,224,608 - EX28DRAFT_2199 0.88 +0.0 2,224,874 - EX28DRAFT_2200 0.41 -0.5 2,224,874 - EX28DRAFT_2200 0.41 -0.1 2,224,941 + EX28DRAFT_2200 0.58 -0.1 2,224,941 + EX28DRAFT_2200 0.58 -0.3 2,225,061 + EX28DRAFT_2200 0.87 -0.2 2,225,214 - +0.3 2,225,247 + +0.6 2,225,247 + +0.3 2,225,248 - -0.5 2,225,248 - +1.3 2,225,277 + +0.8 2,225,301 + -1.6 2,225,455 + EX28DRAFT_2201 0.27 -0.7
Or see this region's nucleotide sequence