Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2191 and EX28DRAFT_2192 overlap by 4 nucleotides EX28DRAFT_2192 and EX28DRAFT_2193 overlap by 14 nucleotides EX28DRAFT_2193 and EX28DRAFT_2194 are separated by 97 nucleotides
EX28DRAFT_2191: EX28DRAFT_2191 - P pilus assembly protein, pilin FimA, at 2,213,752 to 2,214,747
_2191
EX28DRAFT_2192: EX28DRAFT_2192 - P pilus assembly protein, pilin FimA, at 2,214,744 to 2,215,247
_2192
EX28DRAFT_2193: EX28DRAFT_2193 - Rad3-related DNA helicases, at 2,215,234 to 2,217,411
_2193
EX28DRAFT_2194: EX28DRAFT_2194 - Superfamily II DNA and RNA helicases, at 2,217,509 to 2,218,894
_2194
Position (kb)
2215
2216
2217
2218 Strain fitness (log2 ratio)
-1
0
1
2 at 2214.252 kb on + strand, within EX28DRAFT_2191 at 2214.281 kb on + strand, within EX28DRAFT_2191 at 2214.313 kb on + strand, within EX28DRAFT_2191 at 2214.353 kb on + strand, within EX28DRAFT_2191 at 2214.470 kb on + strand, within EX28DRAFT_2191 at 2214.470 kb on + strand, within EX28DRAFT_2191 at 2214.470 kb on + strand, within EX28DRAFT_2191 at 2214.471 kb on - strand, within EX28DRAFT_2191 at 2214.536 kb on + strand, within EX28DRAFT_2191 at 2214.613 kb on + strand, within EX28DRAFT_2191 at 2214.613 kb on + strand, within EX28DRAFT_2191 at 2214.613 kb on + strand, within EX28DRAFT_2191 at 2214.614 kb on - strand, within EX28DRAFT_2191 at 2214.614 kb on - strand, within EX28DRAFT_2191 at 2214.615 kb on + strand, within EX28DRAFT_2191 at 2214.615 kb on + strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.655 kb on + strand at 2214.656 kb on - strand at 2214.766 kb on + strand at 2214.851 kb on - strand, within EX28DRAFT_2192 at 2214.917 kb on - strand, within EX28DRAFT_2192 at 2214.950 kb on - strand, within EX28DRAFT_2192 at 2214.950 kb on - strand, within EX28DRAFT_2192 at 2214.950 kb on - strand, within EX28DRAFT_2192 at 2215.016 kb on + strand, within EX28DRAFT_2192 at 2215.017 kb on - strand, within EX28DRAFT_2192 at 2215.239 kb on + strand at 2215.240 kb on - strand at 2215.579 kb on - strand, within EX28DRAFT_2193 at 2215.736 kb on - strand, within EX28DRAFT_2193 at 2215.736 kb on - strand, within EX28DRAFT_2193 at 2216.691 kb on + strand, within EX28DRAFT_2193 at 2216.810 kb on + strand, within EX28DRAFT_2193 at 2216.913 kb on + strand, within EX28DRAFT_2193 at 2216.913 kb on + strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.965 kb on - strand, within EX28DRAFT_2193 at 2217.368 kb on + strand at 2217.368 kb on + strand at 2217.368 kb on + strand at 2217.368 kb on + strand at 2217.369 kb on - strand at 2217.369 kb on - strand at 2217.369 kb on - strand at 2217.426 kb on + strand at 2217.432 kb on - strand at 2217.433 kb on + strand at 2217.434 kb on - strand at 2217.898 kb on + strand, within EX28DRAFT_2194 at 2217.909 kb on + strand, within EX28DRAFT_2194 at 2217.909 kb on + strand, within EX28DRAFT_2194 at 2218.165 kb on + strand, within EX28DRAFT_2194 at 2218.166 kb on - strand, within EX28DRAFT_2194
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,214,252 + EX28DRAFT_2191 0.50 -0.5 2,214,281 + EX28DRAFT_2191 0.53 +0.7 2,214,313 + EX28DRAFT_2191 0.56 -0.3 2,214,353 + EX28DRAFT_2191 0.60 -0.6 2,214,470 + EX28DRAFT_2191 0.72 +0.7 2,214,470 + EX28DRAFT_2191 0.72 -1.3 2,214,470 + EX28DRAFT_2191 0.72 -0.1 2,214,471 - EX28DRAFT_2191 0.72 -0.5 2,214,536 + EX28DRAFT_2191 0.79 +0.2 2,214,613 + EX28DRAFT_2191 0.86 +0.2 2,214,613 + EX28DRAFT_2191 0.86 +0.7 2,214,613 + EX28DRAFT_2191 0.86 +0.1 2,214,614 - EX28DRAFT_2191 0.87 +0.1 2,214,614 - EX28DRAFT_2191 0.87 -0.1 2,214,615 + EX28DRAFT_2191 0.87 +1.7 2,214,615 + EX28DRAFT_2191 0.87 -0.1 2,214,616 - EX28DRAFT_2191 0.87 -1.5 2,214,616 - EX28DRAFT_2191 0.87 -0.3 2,214,616 - EX28DRAFT_2191 0.87 -0.5 2,214,616 - EX28DRAFT_2191 0.87 -0.2 2,214,616 - EX28DRAFT_2191 0.87 +1.2 2,214,616 - EX28DRAFT_2191 0.87 -0.5 2,214,616 - EX28DRAFT_2191 0.87 -0.4 2,214,616 - EX28DRAFT_2191 0.87 +0.2 2,214,616 - EX28DRAFT_2191 0.87 +0.2 2,214,655 + +0.2 2,214,656 - -0.5 2,214,766 + +2.2 2,214,851 - EX28DRAFT_2192 0.21 +0.0 2,214,917 - EX28DRAFT_2192 0.34 +1.2 2,214,950 - EX28DRAFT_2192 0.41 -0.7 2,214,950 - EX28DRAFT_2192 0.41 -0.8 2,214,950 - EX28DRAFT_2192 0.41 +0.3 2,215,016 + EX28DRAFT_2192 0.54 +0.3 2,215,017 - EX28DRAFT_2192 0.54 -0.9 2,215,239 + +0.0 2,215,240 - +0.4 2,215,579 - EX28DRAFT_2193 0.16 -0.1 2,215,736 - EX28DRAFT_2193 0.23 +0.0 2,215,736 - EX28DRAFT_2193 0.23 -0.4 2,216,691 + EX28DRAFT_2193 0.67 -0.6 2,216,810 + EX28DRAFT_2193 0.72 -0.1 2,216,913 + EX28DRAFT_2193 0.77 +0.7 2,216,913 + EX28DRAFT_2193 0.77 -0.6 2,216,914 - EX28DRAFT_2193 0.77 +0.3 2,216,914 - EX28DRAFT_2193 0.77 -0.6 2,216,914 - EX28DRAFT_2193 0.77 -0.2 2,216,914 - EX28DRAFT_2193 0.77 -0.2 2,216,965 - EX28DRAFT_2193 0.79 +0.1 2,217,368 + +0.2 2,217,368 + -0.5 2,217,368 + +0.8 2,217,368 + -0.1 2,217,369 - -0.2 2,217,369 - +0.0 2,217,369 - -0.6 2,217,426 + -0.2 2,217,432 - +0.1 2,217,433 + -0.1 2,217,434 - -0.1 2,217,898 + EX28DRAFT_2194 0.28 -0.8 2,217,909 + EX28DRAFT_2194 0.29 +0.4 2,217,909 + EX28DRAFT_2194 0.29 +0.2 2,218,165 + EX28DRAFT_2194 0.47 -0.1 2,218,166 - EX28DRAFT_2194 0.47 -0.8
Or see this region's nucleotide sequence