Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2165 and EX28DRAFT_2166 overlap by 1 nucleotides EX28DRAFT_2166 and EX28DRAFT_2167 overlap by 4 nucleotides
EX28DRAFT_2165: EX28DRAFT_2165 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,188,220 to 2,189,743
_2165
EX28DRAFT_2166: EX28DRAFT_2166 - drug resistance transporter, EmrB/QacA subfamily, at 2,189,743 to 2,191,314
_2166
EX28DRAFT_2167: EX28DRAFT_2167 - Multidrug resistance efflux pump, at 2,191,311 to 2,192,405
_2167
Position (kb)
2189
2190
2191
2192 Strain fitness (log2 ratio)
-1
0
1 at 2189.348 kb on - strand, within EX28DRAFT_2165 at 2189.350 kb on + strand, within EX28DRAFT_2165 at 2189.464 kb on + strand, within EX28DRAFT_2165 at 2189.465 kb on - strand, within EX28DRAFT_2165 at 2189.673 kb on + strand at 2189.673 kb on + strand at 2189.674 kb on - strand at 2189.711 kb on + strand at 2189.727 kb on - strand at 2189.727 kb on - strand at 2189.846 kb on + strand at 2189.883 kb on - strand at 2189.883 kb on - strand at 2190.139 kb on - strand, within EX28DRAFT_2166 at 2190.273 kb on + strand, within EX28DRAFT_2166 at 2190.444 kb on - strand, within EX28DRAFT_2166 at 2190.537 kb on - strand, within EX28DRAFT_2166 at 2190.608 kb on + strand, within EX28DRAFT_2166 at 2190.718 kb on - strand, within EX28DRAFT_2166 at 2191.134 kb on - strand, within EX28DRAFT_2166 at 2191.163 kb on + strand at 2191.163 kb on + strand at 2191.164 kb on - strand at 2191.492 kb on - strand, within EX28DRAFT_2167 at 2191.492 kb on - strand, within EX28DRAFT_2167 at 2191.809 kb on + strand, within EX28DRAFT_2167 at 2191.866 kb on - strand, within EX28DRAFT_2167
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,189,348 - EX28DRAFT_2165 0.74 -0.2 2,189,350 + EX28DRAFT_2165 0.74 +0.2 2,189,464 + EX28DRAFT_2165 0.82 -1.4 2,189,465 - EX28DRAFT_2165 0.82 -0.4 2,189,673 + +0.0 2,189,673 + +1.1 2,189,674 - +0.3 2,189,711 + -0.2 2,189,727 - +0.3 2,189,727 - -0.6 2,189,846 + +0.2 2,189,883 - -0.9 2,189,883 - +0.4 2,190,139 - EX28DRAFT_2166 0.25 +0.1 2,190,273 + EX28DRAFT_2166 0.34 -0.5 2,190,444 - EX28DRAFT_2166 0.45 -0.2 2,190,537 - EX28DRAFT_2166 0.51 -0.3 2,190,608 + EX28DRAFT_2166 0.55 -0.7 2,190,718 - EX28DRAFT_2166 0.62 -0.0 2,191,134 - EX28DRAFT_2166 0.88 +0.0 2,191,163 + -0.9 2,191,163 + +0.8 2,191,164 - -0.1 2,191,492 - EX28DRAFT_2167 0.17 +0.0 2,191,492 - EX28DRAFT_2167 0.17 +0.3 2,191,809 + EX28DRAFT_2167 0.45 -0.3 2,191,866 - EX28DRAFT_2167 0.51 -0.5
Or see this region's nucleotide sequence