Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2143

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2142 and EX28DRAFT_2143 are separated by 149 nucleotidesEX28DRAFT_2143 and EX28DRAFT_2144 overlap by 4 nucleotides EX28DRAFT_2142: EX28DRAFT_2142 - HAD-superfamily hydrolase, subfamily IIB, at 2,163,591 to 2,164,406 _2142 EX28DRAFT_2143: EX28DRAFT_2143 - Protein of unknown function (DUF1479), at 2,164,556 to 2,165,812 _2143 EX28DRAFT_2144: EX28DRAFT_2144 - Transcriptional regulators, at 2,165,809 to 2,166,882 _2144 Position (kb) 2164 2165 2166Strain fitness (log2 ratio) -2 -1 0 1at 2163.591 kb on - strandat 2163.591 kb on - strandat 2163.735 kb on + strand, within EX28DRAFT_2142at 2163.735 kb on + strand, within EX28DRAFT_2142at 2163.735 kb on + strand, within EX28DRAFT_2142at 2163.979 kb on - strand, within EX28DRAFT_2142at 2164.032 kb on - strand, within EX28DRAFT_2142at 2164.032 kb on - strand, within EX28DRAFT_2142at 2164.555 kb on + strandat 2164.556 kb on - strandat 2164.612 kb on - strandat 2164.661 kb on - strandat 2164.708 kb on + strand, within EX28DRAFT_2143at 2164.768 kb on + strand, within EX28DRAFT_2143at 2164.772 kb on - strand, within EX28DRAFT_2143at 2164.905 kb on - strand, within EX28DRAFT_2143at 2164.970 kb on + strand, within EX28DRAFT_2143at 2165.100 kb on - strand, within EX28DRAFT_2143at 2165.199 kb on - strand, within EX28DRAFT_2143at 2165.244 kb on - strand, within EX28DRAFT_2143at 2165.286 kb on - strand, within EX28DRAFT_2143at 2165.286 kb on - strand, within EX28DRAFT_2143at 2165.382 kb on + strand, within EX28DRAFT_2143at 2165.382 kb on + strand, within EX28DRAFT_2143at 2165.408 kb on + strand, within EX28DRAFT_2143at 2165.409 kb on - strand, within EX28DRAFT_2143at 2165.409 kb on - strand, within EX28DRAFT_2143at 2165.630 kb on + strand, within EX28DRAFT_2143at 2165.631 kb on - strand, within EX28DRAFT_2143at 2165.631 kb on - strand, within EX28DRAFT_2143at 2165.631 kb on - strand, within EX28DRAFT_2143at 2165.736 kb on - strandat 2165.810 kb on + strandat 2165.810 kb on + strandat 2165.819 kb on + strandat 2165.820 kb on - strandat 2165.863 kb on + strandat 2165.955 kb on + strand, within EX28DRAFT_2144at 2165.957 kb on + strand, within EX28DRAFT_2144at 2165.957 kb on + strand, within EX28DRAFT_2144at 2165.957 kb on + strand, within EX28DRAFT_2144at 2166.148 kb on + strand, within EX28DRAFT_2144at 2166.439 kb on - strand, within EX28DRAFT_2144at 2166.439 kb on - strand, within EX28DRAFT_2144at 2166.705 kb on + strand, within EX28DRAFT_2144at 2166.705 kb on + strand, within EX28DRAFT_2144

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,163,591 - +0.9
2,163,591 - +0.8
2,163,735 + EX28DRAFT_2142 0.18 -0.0
2,163,735 + EX28DRAFT_2142 0.18 +0.6
2,163,735 + EX28DRAFT_2142 0.18 -0.6
2,163,979 - EX28DRAFT_2142 0.48 -0.2
2,164,032 - EX28DRAFT_2142 0.54 -1.5
2,164,032 - EX28DRAFT_2142 0.54 -0.2
2,164,555 + +0.2
2,164,556 - +0.1
2,164,612 - -1.0
2,164,661 - -0.2
2,164,708 + EX28DRAFT_2143 0.12 -0.2
2,164,768 + EX28DRAFT_2143 0.17 +0.1
2,164,772 - EX28DRAFT_2143 0.17 +0.1
2,164,905 - EX28DRAFT_2143 0.28 -0.2
2,164,970 + EX28DRAFT_2143 0.33 +0.1
2,165,100 - EX28DRAFT_2143 0.43 -0.9
2,165,199 - EX28DRAFT_2143 0.51 +0.6
2,165,244 - EX28DRAFT_2143 0.55 +0.1
2,165,286 - EX28DRAFT_2143 0.58 -0.6
2,165,286 - EX28DRAFT_2143 0.58 -2.5
2,165,382 + EX28DRAFT_2143 0.66 +0.2
2,165,382 + EX28DRAFT_2143 0.66 +0.2
2,165,408 + EX28DRAFT_2143 0.68 -0.7
2,165,409 - EX28DRAFT_2143 0.68 -0.1
2,165,409 - EX28DRAFT_2143 0.68 -0.9
2,165,630 + EX28DRAFT_2143 0.85 +0.5
2,165,631 - EX28DRAFT_2143 0.86 -1.0
2,165,631 - EX28DRAFT_2143 0.86 -0.1
2,165,631 - EX28DRAFT_2143 0.86 +1.2
2,165,736 - +1.7
2,165,810 + -0.0
2,165,810 + -0.7
2,165,819 + -0.1
2,165,820 - +0.3
2,165,863 + -0.5
2,165,955 + EX28DRAFT_2144 0.14 +0.1
2,165,957 + EX28DRAFT_2144 0.14 -0.0
2,165,957 + EX28DRAFT_2144 0.14 +0.2
2,165,957 + EX28DRAFT_2144 0.14 -0.2
2,166,148 + EX28DRAFT_2144 0.32 -0.1
2,166,439 - EX28DRAFT_2144 0.59 +0.2
2,166,439 - EX28DRAFT_2144 0.59 -0.4
2,166,705 + EX28DRAFT_2144 0.83 -0.5
2,166,705 + EX28DRAFT_2144 0.83 +0.0

Or see this region's nucleotide sequence