Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2069

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2068 and EX28DRAFT_2069 are separated by 259 nucleotidesEX28DRAFT_2069 and EX28DRAFT_2070 overlap by 4 nucleotidesEX28DRAFT_2070 and EX28DRAFT_2071 overlap by 4 nucleotides EX28DRAFT_2068: EX28DRAFT_2068 - Chitinase, at 2,092,852 to 2,095,578 _2068 EX28DRAFT_2069: EX28DRAFT_2069 - Type II secretory pathway, prepilin signal peptidase PulO and related peptidases, at 2,095,838 to 2,096,629 _2069 EX28DRAFT_2070: EX28DRAFT_2070 - Type II secretory pathway, component PulM, at 2,096,626 to 2,097,111 _2070 EX28DRAFT_2071: EX28DRAFT_2071 - Type II secretory pathway, component PulL, at 2,097,108 to 2,098,262 _2071 Position (kb) 2095 2096 2097Strain fitness (log2 ratio) -2 -1 0 1at 2095.125 kb on + strand, within EX28DRAFT_2068at 2095.137 kb on + strand, within EX28DRAFT_2068at 2095.140 kb on + strand, within EX28DRAFT_2068at 2095.434 kb on - strandat 2095.440 kb on + strandat 2095.441 kb on - strandat 2095.895 kb on - strandat 2095.897 kb on - strandat 2095.957 kb on + strand, within EX28DRAFT_2069at 2096.038 kb on + strand, within EX28DRAFT_2069at 2096.050 kb on - strand, within EX28DRAFT_2069at 2096.055 kb on - strand, within EX28DRAFT_2069at 2096.055 kb on - strand, within EX28DRAFT_2069at 2096.091 kb on + strand, within EX28DRAFT_2069at 2096.131 kb on - strand, within EX28DRAFT_2069at 2096.134 kb on + strand, within EX28DRAFT_2069at 2096.224 kb on + strand, within EX28DRAFT_2069at 2096.225 kb on - strand, within EX28DRAFT_2069at 2096.225 kb on - strand, within EX28DRAFT_2069at 2096.522 kb on - strand, within EX28DRAFT_2069at 2096.522 kb on - strand, within EX28DRAFT_2069at 2096.946 kb on + strand, within EX28DRAFT_2070at 2096.951 kb on - strand, within EX28DRAFT_2070at 2096.951 kb on - strand, within EX28DRAFT_2070at 2097.115 kb on + strandat 2097.115 kb on + strandat 2097.139 kb on + strandat 2097.139 kb on + strandat 2097.221 kb on + strandat 2097.376 kb on + strand, within EX28DRAFT_2071at 2097.376 kb on + strand, within EX28DRAFT_2071at 2097.377 kb on - strand, within EX28DRAFT_2071at 2097.379 kb on + strand, within EX28DRAFT_2071at 2097.379 kb on + strand, within EX28DRAFT_2071at 2097.415 kb on + strand, within EX28DRAFT_2071at 2097.415 kb on + strand, within EX28DRAFT_2071at 2097.483 kb on - strand, within EX28DRAFT_2071

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,095,125 + EX28DRAFT_2068 0.83 -0.5
2,095,137 + EX28DRAFT_2068 0.84 +0.6
2,095,140 + EX28DRAFT_2068 0.84 +0.3
2,095,434 - +0.0
2,095,440 + +0.6
2,095,441 - -0.7
2,095,895 - -0.7
2,095,897 - -0.6
2,095,957 + EX28DRAFT_2069 0.15 -0.1
2,096,038 + EX28DRAFT_2069 0.25 +0.2
2,096,050 - EX28DRAFT_2069 0.27 -0.2
2,096,055 - EX28DRAFT_2069 0.27 +0.5
2,096,055 - EX28DRAFT_2069 0.27 +0.2
2,096,091 + EX28DRAFT_2069 0.32 -0.1
2,096,131 - EX28DRAFT_2069 0.37 +0.5
2,096,134 + EX28DRAFT_2069 0.37 +0.1
2,096,224 + EX28DRAFT_2069 0.49 -0.9
2,096,225 - EX28DRAFT_2069 0.49 -0.1
2,096,225 - EX28DRAFT_2069 0.49 +0.5
2,096,522 - EX28DRAFT_2069 0.86 -0.0
2,096,522 - EX28DRAFT_2069 0.86 +0.4
2,096,946 + EX28DRAFT_2070 0.66 +0.4
2,096,951 - EX28DRAFT_2070 0.67 -0.1
2,096,951 - EX28DRAFT_2070 0.67 +0.8
2,097,115 + -0.7
2,097,115 + -2.0
2,097,139 + -2.1
2,097,139 + +0.6
2,097,221 + +0.7
2,097,376 + EX28DRAFT_2071 0.23 -0.8
2,097,376 + EX28DRAFT_2071 0.23 +0.0
2,097,377 - EX28DRAFT_2071 0.23 -0.2
2,097,379 + EX28DRAFT_2071 0.23 +0.7
2,097,379 + EX28DRAFT_2071 0.23 -1.5
2,097,415 + EX28DRAFT_2071 0.27 -1.7
2,097,415 + EX28DRAFT_2071 0.27 -0.3
2,097,483 - EX28DRAFT_2071 0.32 -0.5

Or see this region's nucleotide sequence