Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2055 and EX28DRAFT_2056 overlap by 4 nucleotides EX28DRAFT_2056 and EX28DRAFT_2057 are separated by 372 nucleotides
EX28DRAFT_2055: EX28DRAFT_2055 - Uncharacterized protein conserved in bacteria, at 2,076,713 to 2,077,669
_2055
EX28DRAFT_2056: EX28DRAFT_2056 - Predicted ATP-dependent endonuclease of the OLD family, at 2,077,666 to 2,079,324
_2056
EX28DRAFT_2057: EX28DRAFT_2057 - MIP family channel proteins, at 2,079,697 to 2,080,392
_2057
Position (kb)
2077
2078
2079
2080 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2076.689 kb on - strand at 2076.709 kb on + strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2077.228 kb on + strand, within EX28DRAFT_2055 at 2077.432 kb on + strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.540 kb on + strand, within EX28DRAFT_2055 at 2077.541 kb on - strand, within EX28DRAFT_2055 at 2077.893 kb on - strand, within EX28DRAFT_2056 at 2077.896 kb on + strand, within EX28DRAFT_2056 at 2077.896 kb on + strand, within EX28DRAFT_2056 at 2077.896 kb on + strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.989 kb on - strand, within EX28DRAFT_2056 at 2078.368 kb on - strand, within EX28DRAFT_2056 at 2078.670 kb on - strand, within EX28DRAFT_2056 at 2079.099 kb on + strand, within EX28DRAFT_2056 at 2079.282 kb on + strand at 2079.282 kb on + strand at 2079.324 kb on + strand at 2079.360 kb on + strand at 2079.360 kb on + strand at 2079.370 kb on + strand at 2079.384 kb on + strand at 2079.384 kb on + strand at 2079.487 kb on + strand at 2079.488 kb on - strand at 2079.488 kb on - strand at 2079.488 kb on - strand at 2079.488 kb on - strand at 2079.510 kb on - strand at 2079.516 kb on + strand at 2079.516 kb on + strand at 2079.516 kb on + strand at 2079.517 kb on - strand at 2079.517 kb on - strand at 2079.559 kb on - strand at 2079.616 kb on - strand at 2079.652 kb on + strand at 2079.652 kb on + strand at 2079.652 kb on + strand at 2079.680 kb on - strand at 2079.729 kb on + strand at 2079.744 kb on - strand at 2079.836 kb on + strand, within EX28DRAFT_2057 at 2079.836 kb on + strand, within EX28DRAFT_2057 at 2079.837 kb on - strand, within EX28DRAFT_2057 at 2079.865 kb on - strand, within EX28DRAFT_2057 at 2079.899 kb on + strand, within EX28DRAFT_2057 at 2079.899 kb on + strand, within EX28DRAFT_2057 at 2079.905 kb on + strand, within EX28DRAFT_2057 at 2079.938 kb on + strand, within EX28DRAFT_2057 at 2079.938 kb on + strand, within EX28DRAFT_2057 at 2079.946 kb on + strand, within EX28DRAFT_2057 at 2079.946 kb on + strand, within EX28DRAFT_2057 at 2079.973 kb on - strand, within EX28DRAFT_2057 at 2079.975 kb on + strand, within EX28DRAFT_2057 at 2079.975 kb on + strand, within EX28DRAFT_2057 at 2079.975 kb on + strand, within EX28DRAFT_2057 at 2079.975 kb on + strand, within EX28DRAFT_2057 at 2079.994 kb on + strand, within EX28DRAFT_2057 at 2080.227 kb on + strand, within EX28DRAFT_2057
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,076,689 - +0.5 2,076,709 + -0.1 2,076,710 - -0.3 2,076,710 - -0.1 2,076,710 - -0.1 2,076,710 - -0.0 2,077,228 + EX28DRAFT_2055 0.54 -0.4 2,077,432 + EX28DRAFT_2055 0.75 -0.0 2,077,433 - EX28DRAFT_2055 0.75 -0.2 2,077,433 - EX28DRAFT_2055 0.75 -0.4 2,077,433 - EX28DRAFT_2055 0.75 -2.3 2,077,433 - EX28DRAFT_2055 0.75 +0.1 2,077,540 + EX28DRAFT_2055 0.86 -0.4 2,077,541 - EX28DRAFT_2055 0.87 -0.4 2,077,893 - EX28DRAFT_2056 0.14 -0.3 2,077,896 + EX28DRAFT_2056 0.14 -0.2 2,077,896 + EX28DRAFT_2056 0.14 -0.9 2,077,896 + EX28DRAFT_2056 0.14 +0.5 2,077,897 - EX28DRAFT_2056 0.14 +0.2 2,077,897 - EX28DRAFT_2056 0.14 -1.5 2,077,897 - EX28DRAFT_2056 0.14 -0.3 2,077,897 - EX28DRAFT_2056 0.14 -0.3 2,077,989 - EX28DRAFT_2056 0.19 -0.6 2,078,368 - EX28DRAFT_2056 0.42 -2.8 2,078,670 - EX28DRAFT_2056 0.61 +0.1 2,079,099 + EX28DRAFT_2056 0.86 -0.2 2,079,282 + +0.6 2,079,282 + +0.4 2,079,324 + +0.0 2,079,360 + +0.2 2,079,360 + -0.7 2,079,370 + -0.1 2,079,384 + +0.4 2,079,384 + +0.1 2,079,487 + +0.1 2,079,488 - +0.2 2,079,488 - -0.1 2,079,488 - -0.2 2,079,488 - +0.3 2,079,510 - -0.2 2,079,516 + +0.5 2,079,516 + +0.1 2,079,516 + +0.5 2,079,517 - +0.6 2,079,517 - +0.3 2,079,559 - -0.3 2,079,616 - -0.1 2,079,652 + +0.1 2,079,652 + -0.1 2,079,652 + -0.0 2,079,680 - -1.5 2,079,729 + +0.4 2,079,744 - -0.2 2,079,836 + EX28DRAFT_2057 0.20 +0.3 2,079,836 + EX28DRAFT_2057 0.20 -0.2 2,079,837 - EX28DRAFT_2057 0.20 +0.0 2,079,865 - EX28DRAFT_2057 0.24 -0.1 2,079,899 + EX28DRAFT_2057 0.29 +0.3 2,079,899 + EX28DRAFT_2057 0.29 -0.0 2,079,905 + EX28DRAFT_2057 0.30 -0.1 2,079,938 + EX28DRAFT_2057 0.35 -0.3 2,079,938 + EX28DRAFT_2057 0.35 -0.2 2,079,946 + EX28DRAFT_2057 0.36 +0.2 2,079,946 + EX28DRAFT_2057 0.36 -1.2 2,079,973 - EX28DRAFT_2057 0.40 +1.3 2,079,975 + EX28DRAFT_2057 0.40 +0.3 2,079,975 + EX28DRAFT_2057 0.40 +1.0 2,079,975 + EX28DRAFT_2057 0.40 +0.4 2,079,975 + EX28DRAFT_2057 0.40 +0.0 2,079,994 + EX28DRAFT_2057 0.43 +1.1 2,080,227 + EX28DRAFT_2057 0.76 +0.0
Or see this region's nucleotide sequence