Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2053 and EX28DRAFT_2054 overlap by 4 nucleotides EX28DRAFT_2054 and EX28DRAFT_2055 are separated by 159 nucleotides
EX28DRAFT_2053: EX28DRAFT_2053 - ABC-type antimicrobial peptide transport system, ATPase component, at 2,073,501 to 2,075,441
_2053
EX28DRAFT_2054: EX28DRAFT_2054 - RND family efflux transporter, MFP subunit, at 2,075,438 to 2,076,553
_2054
EX28DRAFT_2055: EX28DRAFT_2055 - Uncharacterized protein conserved in bacteria, at 2,076,713 to 2,077,669
_2055
Position (kb)
2075
2076
2077 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2074.451 kb on - strand, within EX28DRAFT_2053 at 2074.451 kb on - strand, within EX28DRAFT_2053 at 2074.518 kb on - strand, within EX28DRAFT_2053 at 2074.518 kb on - strand, within EX28DRAFT_2053 at 2074.518 kb on - strand, within EX28DRAFT_2053 at 2074.521 kb on - strand, within EX28DRAFT_2053 at 2074.521 kb on - strand, within EX28DRAFT_2053 at 2075.023 kb on + strand, within EX28DRAFT_2053 at 2075.024 kb on - strand, within EX28DRAFT_2053 at 2075.172 kb on - strand, within EX28DRAFT_2053 at 2075.249 kb on - strand at 2075.249 kb on - strand at 2075.584 kb on + strand, within EX28DRAFT_2054 at 2075.585 kb on - strand, within EX28DRAFT_2054 at 2075.680 kb on + strand, within EX28DRAFT_2054 at 2075.712 kb on - strand, within EX28DRAFT_2054 at 2075.727 kb on + strand, within EX28DRAFT_2054 at 2075.728 kb on - strand, within EX28DRAFT_2054 at 2075.728 kb on - strand, within EX28DRAFT_2054 at 2075.730 kb on + strand, within EX28DRAFT_2054 at 2075.730 kb on + strand, within EX28DRAFT_2054 at 2075.730 kb on + strand, within EX28DRAFT_2054 at 2075.737 kb on + strand, within EX28DRAFT_2054 at 2075.819 kb on - strand, within EX28DRAFT_2054 at 2075.842 kb on + strand, within EX28DRAFT_2054 at 2075.842 kb on + strand, within EX28DRAFT_2054 at 2076.113 kb on - strand, within EX28DRAFT_2054 at 2076.113 kb on - strand, within EX28DRAFT_2054 at 2076.116 kb on + strand, within EX28DRAFT_2054 at 2076.134 kb on - strand, within EX28DRAFT_2054 at 2076.448 kb on - strand at 2076.497 kb on + strand at 2076.553 kb on + strand at 2076.558 kb on - strand at 2076.567 kb on - strand at 2076.584 kb on + strand at 2076.689 kb on - strand at 2076.709 kb on + strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2077.228 kb on + strand, within EX28DRAFT_2055 at 2077.432 kb on + strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.540 kb on + strand, within EX28DRAFT_2055 at 2077.541 kb on - strand, within EX28DRAFT_2055
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,074,451 - EX28DRAFT_2053 0.49 -0.3 2,074,451 - EX28DRAFT_2053 0.49 +0.2 2,074,518 - EX28DRAFT_2053 0.52 -0.0 2,074,518 - EX28DRAFT_2053 0.52 +0.2 2,074,518 - EX28DRAFT_2053 0.52 +0.0 2,074,521 - EX28DRAFT_2053 0.53 -0.0 2,074,521 - EX28DRAFT_2053 0.53 +2.5 2,075,023 + EX28DRAFT_2053 0.78 +1.0 2,075,024 - EX28DRAFT_2053 0.78 +0.6 2,075,172 - EX28DRAFT_2053 0.86 -0.3 2,075,249 - +2.2 2,075,249 - -0.4 2,075,584 + EX28DRAFT_2054 0.13 +0.1 2,075,585 - EX28DRAFT_2054 0.13 -1.6 2,075,680 + EX28DRAFT_2054 0.22 -0.2 2,075,712 - EX28DRAFT_2054 0.25 -0.3 2,075,727 + EX28DRAFT_2054 0.26 -0.1 2,075,728 - EX28DRAFT_2054 0.26 -0.6 2,075,728 - EX28DRAFT_2054 0.26 +0.1 2,075,730 + EX28DRAFT_2054 0.26 +0.3 2,075,730 + EX28DRAFT_2054 0.26 +0.1 2,075,730 + EX28DRAFT_2054 0.26 -1.1 2,075,737 + EX28DRAFT_2054 0.27 -0.3 2,075,819 - EX28DRAFT_2054 0.34 +0.2 2,075,842 + EX28DRAFT_2054 0.36 -0.6 2,075,842 + EX28DRAFT_2054 0.36 -0.2 2,076,113 - EX28DRAFT_2054 0.60 -0.9 2,076,113 - EX28DRAFT_2054 0.60 -0.1 2,076,116 + EX28DRAFT_2054 0.61 -0.6 2,076,134 - EX28DRAFT_2054 0.62 +0.6 2,076,448 - -0.0 2,076,497 + +1.9 2,076,553 + -3.1 2,076,558 - +0.4 2,076,567 - +0.8 2,076,584 + -0.3 2,076,689 - +0.5 2,076,709 + -0.1 2,076,710 - -0.3 2,076,710 - -0.1 2,076,710 - -0.1 2,076,710 - -0.0 2,077,228 + EX28DRAFT_2055 0.54 -0.4 2,077,432 + EX28DRAFT_2055 0.75 -0.0 2,077,433 - EX28DRAFT_2055 0.75 -0.2 2,077,433 - EX28DRAFT_2055 0.75 -0.4 2,077,433 - EX28DRAFT_2055 0.75 -2.3 2,077,433 - EX28DRAFT_2055 0.75 +0.1 2,077,540 + EX28DRAFT_2055 0.86 -0.4 2,077,541 - EX28DRAFT_2055 0.87 -0.4
Or see this region's nucleotide sequence