Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2038

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2036 and EX28DRAFT_2037 are separated by 1 nucleotidesEX28DRAFT_2037 and EX28DRAFT_2038 are separated by 10 nucleotidesEX28DRAFT_2038 and EX28DRAFT_2039 are separated by 211 nucleotides EX28DRAFT_2036: EX28DRAFT_2036 - DMSO reductase anchor subunit, at 2,050,943 to 2,051,806 _2036 EX28DRAFT_2037: EX28DRAFT_2037 - DMSO reductase, iron-sulfur subunit, at 2,051,808 to 2,052,425 _2037 EX28DRAFT_2038: EX28DRAFT_2038 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, at 2,052,436 to 2,054,880 _2038 EX28DRAFT_2039: EX28DRAFT_2039 - seryl-tRNA synthetase (EC 6.1.1.11), at 2,055,092 to 2,056,384 _2039 Position (kb) 2052 2053 2054 2055Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2051.853 kb on - strandat 2051.853 kb on - strandat 2052.080 kb on - strand, within EX28DRAFT_2037at 2052.307 kb on + strand, within EX28DRAFT_2037at 2052.402 kb on - strandat 2052.523 kb on - strandat 2052.652 kb on - strandat 2052.736 kb on + strand, within EX28DRAFT_2038at 2052.737 kb on - strand, within EX28DRAFT_2038at 2052.827 kb on + strand, within EX28DRAFT_2038at 2052.828 kb on - strand, within EX28DRAFT_2038at 2052.828 kb on - strand, within EX28DRAFT_2038at 2052.828 kb on - strand, within EX28DRAFT_2038at 2052.828 kb on - strand, within EX28DRAFT_2038at 2052.848 kb on + strand, within EX28DRAFT_2038at 2052.848 kb on + strand, within EX28DRAFT_2038at 2052.849 kb on - strand, within EX28DRAFT_2038at 2052.924 kb on - strand, within EX28DRAFT_2038at 2053.025 kb on + strand, within EX28DRAFT_2038at 2053.025 kb on + strand, within EX28DRAFT_2038at 2053.026 kb on - strand, within EX28DRAFT_2038at 2053.026 kb on - strand, within EX28DRAFT_2038at 2053.026 kb on - strand, within EX28DRAFT_2038at 2053.029 kb on + strand, within EX28DRAFT_2038at 2053.119 kb on + strand, within EX28DRAFT_2038at 2053.182 kb on - strand, within EX28DRAFT_2038at 2053.236 kb on - strand, within EX28DRAFT_2038at 2053.317 kb on - strand, within EX28DRAFT_2038at 2053.439 kb on + strand, within EX28DRAFT_2038at 2053.439 kb on + strand, within EX28DRAFT_2038at 2053.439 kb on + strand, within EX28DRAFT_2038at 2053.440 kb on - strand, within EX28DRAFT_2038at 2053.542 kb on + strand, within EX28DRAFT_2038at 2053.543 kb on - strand, within EX28DRAFT_2038at 2053.543 kb on - strand, within EX28DRAFT_2038at 2053.587 kb on + strand, within EX28DRAFT_2038at 2053.588 kb on - strand, within EX28DRAFT_2038at 2053.740 kb on - strand, within EX28DRAFT_2038at 2053.860 kb on + strand, within EX28DRAFT_2038at 2053.862 kb on + strand, within EX28DRAFT_2038at 2053.863 kb on - strand, within EX28DRAFT_2038at 2053.863 kb on - strand, within EX28DRAFT_2038at 2053.863 kb on - strand, within EX28DRAFT_2038at 2053.872 kb on - strand, within EX28DRAFT_2038at 2053.928 kb on + strand, within EX28DRAFT_2038at 2053.928 kb on + strand, within EX28DRAFT_2038at 2053.929 kb on - strand, within EX28DRAFT_2038at 2053.993 kb on + strand, within EX28DRAFT_2038at 2053.993 kb on + strand, within EX28DRAFT_2038at 2054.058 kb on + strand, within EX28DRAFT_2038at 2054.118 kb on - strand, within EX28DRAFT_2038at 2054.120 kb on + strand, within EX28DRAFT_2038at 2054.120 kb on + strand, within EX28DRAFT_2038at 2054.121 kb on - strand, within EX28DRAFT_2038at 2054.231 kb on + strand, within EX28DRAFT_2038at 2054.231 kb on + strand, within EX28DRAFT_2038at 2054.270 kb on + strand, within EX28DRAFT_2038at 2054.280 kb on - strand, within EX28DRAFT_2038at 2054.286 kb on + strand, within EX28DRAFT_2038at 2054.286 kb on + strand, within EX28DRAFT_2038at 2054.381 kb on + strand, within EX28DRAFT_2038at 2054.451 kb on - strand, within EX28DRAFT_2038at 2054.516 kb on + strand, within EX28DRAFT_2038at 2054.537 kb on + strand, within EX28DRAFT_2038at 2054.538 kb on - strand, within EX28DRAFT_2038at 2054.538 kb on - strand, within EX28DRAFT_2038at 2054.587 kb on + strand, within EX28DRAFT_2038at 2054.597 kb on + strand, within EX28DRAFT_2038at 2054.597 kb on + strand, within EX28DRAFT_2038at 2054.597 kb on + strand, within EX28DRAFT_2038at 2054.597 kb on + strand, within EX28DRAFT_2038at 2054.597 kb on + strand, within EX28DRAFT_2038at 2054.598 kb on - strand, within EX28DRAFT_2038at 2054.598 kb on - strand, within EX28DRAFT_2038at 2054.630 kb on + strand, within EX28DRAFT_2038at 2054.630 kb on + strand, within EX28DRAFT_2038at 2054.635 kb on - strand, within EX28DRAFT_2038at 2054.635 kb on - strand, within EX28DRAFT_2038at 2054.658 kb on + strandat 2054.659 kb on - strandat 2054.685 kb on + strandat 2054.691 kb on + strandat 2054.962 kb on + strandat 2054.963 kb on - strandat 2055.001 kb on + strandat 2055.001 kb on + strandat 2055.004 kb on + strandat 2055.009 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,051,853 - +0.0
2,051,853 - -0.7
2,052,080 - EX28DRAFT_2037 0.44 +1.3
2,052,307 + EX28DRAFT_2037 0.81 -0.3
2,052,402 - +0.6
2,052,523 - +0.0
2,052,652 - -0.2
2,052,736 + EX28DRAFT_2038 0.12 -1.2
2,052,737 - EX28DRAFT_2038 0.12 +0.7
2,052,827 + EX28DRAFT_2038 0.16 -0.2
2,052,828 - EX28DRAFT_2038 0.16 +1.5
2,052,828 - EX28DRAFT_2038 0.16 -0.9
2,052,828 - EX28DRAFT_2038 0.16 -0.2
2,052,828 - EX28DRAFT_2038 0.16 -0.2
2,052,848 + EX28DRAFT_2038 0.17 -0.5
2,052,848 + EX28DRAFT_2038 0.17 +0.8
2,052,849 - EX28DRAFT_2038 0.17 -0.1
2,052,924 - EX28DRAFT_2038 0.20 -0.2
2,053,025 + EX28DRAFT_2038 0.24 +0.8
2,053,025 + EX28DRAFT_2038 0.24 -0.8
2,053,026 - EX28DRAFT_2038 0.24 +0.3
2,053,026 - EX28DRAFT_2038 0.24 -0.1
2,053,026 - EX28DRAFT_2038 0.24 +0.7
2,053,029 + EX28DRAFT_2038 0.24 -0.3
2,053,119 + EX28DRAFT_2038 0.28 +0.1
2,053,182 - EX28DRAFT_2038 0.31 +0.2
2,053,236 - EX28DRAFT_2038 0.33 +0.1
2,053,317 - EX28DRAFT_2038 0.36 +0.8
2,053,439 + EX28DRAFT_2038 0.41 +0.6
2,053,439 + EX28DRAFT_2038 0.41 -1.0
2,053,439 + EX28DRAFT_2038 0.41 -0.3
2,053,440 - EX28DRAFT_2038 0.41 +0.4
2,053,542 + EX28DRAFT_2038 0.45 +0.4
2,053,543 - EX28DRAFT_2038 0.45 -2.8
2,053,543 - EX28DRAFT_2038 0.45 -0.1
2,053,587 + EX28DRAFT_2038 0.47 -1.0
2,053,588 - EX28DRAFT_2038 0.47 +0.7
2,053,740 - EX28DRAFT_2038 0.53 +0.0
2,053,860 + EX28DRAFT_2038 0.58 +0.5
2,053,862 + EX28DRAFT_2038 0.58 +0.7
2,053,863 - EX28DRAFT_2038 0.58 +0.4
2,053,863 - EX28DRAFT_2038 0.58 +0.4
2,053,863 - EX28DRAFT_2038 0.58 -0.4
2,053,872 - EX28DRAFT_2038 0.59 +1.1
2,053,928 + EX28DRAFT_2038 0.61 +0.4
2,053,928 + EX28DRAFT_2038 0.61 -0.8
2,053,929 - EX28DRAFT_2038 0.61 -0.7
2,053,993 + EX28DRAFT_2038 0.64 -0.4
2,053,993 + EX28DRAFT_2038 0.64 +0.0
2,054,058 + EX28DRAFT_2038 0.66 +0.4
2,054,118 - EX28DRAFT_2038 0.69 -0.1
2,054,120 + EX28DRAFT_2038 0.69 +0.2
2,054,120 + EX28DRAFT_2038 0.69 -0.1
2,054,121 - EX28DRAFT_2038 0.69 +0.2
2,054,231 + EX28DRAFT_2038 0.73 -0.7
2,054,231 + EX28DRAFT_2038 0.73 +0.0
2,054,270 + EX28DRAFT_2038 0.75 +0.2
2,054,280 - EX28DRAFT_2038 0.75 +0.4
2,054,286 + EX28DRAFT_2038 0.76 -1.3
2,054,286 + EX28DRAFT_2038 0.76 +2.2
2,054,381 + EX28DRAFT_2038 0.80 -0.8
2,054,451 - EX28DRAFT_2038 0.82 +0.6
2,054,516 + EX28DRAFT_2038 0.85 -0.6
2,054,537 + EX28DRAFT_2038 0.86 +0.3
2,054,538 - EX28DRAFT_2038 0.86 +0.0
2,054,538 - EX28DRAFT_2038 0.86 +0.4
2,054,587 + EX28DRAFT_2038 0.88 +0.5
2,054,597 + EX28DRAFT_2038 0.88 +0.1
2,054,597 + EX28DRAFT_2038 0.88 -0.0
2,054,597 + EX28DRAFT_2038 0.88 +0.2
2,054,597 + EX28DRAFT_2038 0.88 +0.4
2,054,597 + EX28DRAFT_2038 0.88 +0.2
2,054,598 - EX28DRAFT_2038 0.88 +1.4
2,054,598 - EX28DRAFT_2038 0.88 -0.1
2,054,630 + EX28DRAFT_2038 0.90 +0.1
2,054,630 + EX28DRAFT_2038 0.90 -0.1
2,054,635 - EX28DRAFT_2038 0.90 +0.1
2,054,635 - EX28DRAFT_2038 0.90 -0.2
2,054,658 + +0.7
2,054,659 - +0.1
2,054,685 + -0.2
2,054,691 + -0.2
2,054,962 + +0.2
2,054,963 - -2.4
2,055,001 + +0.1
2,055,001 + +0.3
2,055,004 + -0.3
2,055,009 + -0.0

Or see this region's nucleotide sequence